Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17240 and ABZR87_RS17245 are separated by 77 nucleotides ABZR87_RS17245 and ABZR87_RS17250 are separated by 95 nucleotides ABZR87_RS17250 and ABZR87_RS17255 overlap by 22 nucleotides
ABZR87_RS17240: ABZR87_RS17240 - alkyl hydroperoxide reductase subunit F, at 225,685 to 227,259
_RS17240
ABZR87_RS17245: ABZR87_RS17245 - LysR substrate-binding domain-containing protein, at 227,337 to 228,224
_RS17245
ABZR87_RS17250: ABZR87_RS17250 - nucleoside deaminase, at 228,320 to 228,775
_RS17250
ABZR87_RS17255: ABZR87_RS17255 - CynX/NimT family MFS transporter, at 228,754 to 230,007
_RS17255
Position (kb) 227
228
229 Strain fitness (log2 ratio) -2
-1
0
1
2 at 226.372 kb on + strand, within ABZR87_RS17240 at 226.693 kb on + strand, within ABZR87_RS17240 at 226.694 kb on - strand, within ABZR87_RS17240 at 226.714 kb on + strand, within ABZR87_RS17240 at 226.714 kb on + strand, within ABZR87_RS17240 at 226.715 kb on - strand, within ABZR87_RS17240 at 226.715 kb on - strand, within ABZR87_RS17240 at 226.715 kb on - strand, within ABZR87_RS17240 at 226.969 kb on + strand, within ABZR87_RS17240 at 226.969 kb on + strand, within ABZR87_RS17240 at 227.165 kb on - strand at 227.282 kb on - strand at 227.301 kb on + strand at 227.302 kb on - strand at 227.587 kb on + strand, within ABZR87_RS17245 at 227.587 kb on + strand, within ABZR87_RS17245 at 227.588 kb on - strand, within ABZR87_RS17245 at 227.588 kb on - strand, within ABZR87_RS17245 at 227.644 kb on + strand, within ABZR87_RS17245 at 227.821 kb on + strand, within ABZR87_RS17245 at 227.821 kb on + strand, within ABZR87_RS17245 at 228.285 kb on + strand at 228.335 kb on + strand at 228.335 kb on + strand at 228.335 kb on + strand at 228.335 kb on + strand at 228.335 kb on + strand at 228.335 kb on + strand at 228.335 kb on + strand at 228.335 kb on + strand at 228.335 kb on + strand at 228.335 kb on + strand at 228.336 kb on - strand at 228.336 kb on - strand at 228.336 kb on - strand at 228.336 kb on - strand at 228.336 kb on - strand at 228.517 kb on + strand, within ABZR87_RS17250 at 228.545 kb on + strand, within ABZR87_RS17250 at 228.545 kb on + strand, within ABZR87_RS17250 at 228.545 kb on + strand, within ABZR87_RS17250 at 228.545 kb on + strand, within ABZR87_RS17250 at 228.545 kb on + strand, within ABZR87_RS17250 at 228.546 kb on - strand, within ABZR87_RS17250 at 228.546 kb on - strand, within ABZR87_RS17250 at 228.546 kb on - strand, within ABZR87_RS17250 at 228.546 kb on - strand, within ABZR87_RS17250 at 228.611 kb on + strand, within ABZR87_RS17250 at 228.611 kb on + strand, within ABZR87_RS17250 at 228.611 kb on + strand, within ABZR87_RS17250 at 228.612 kb on - strand, within ABZR87_RS17250 at 228.620 kb on + strand, within ABZR87_RS17250 at 228.623 kb on + strand, within ABZR87_RS17250 at 228.668 kb on + strand, within ABZR87_RS17250 at 228.668 kb on + strand, within ABZR87_RS17250 at 228.668 kb on + strand, within ABZR87_RS17250 at 228.668 kb on + strand, within ABZR87_RS17250 at 228.669 kb on - strand, within ABZR87_RS17250 at 228.746 kb on + strand at 228.747 kb on - strand at 228.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 226,372 + ABZR87_RS17240 0.44 -1.7 226,693 + ABZR87_RS17240 0.64 -2.2 226,694 - ABZR87_RS17240 0.64 +0.5 226,714 + ABZR87_RS17240 0.65 -1.8 226,714 + ABZR87_RS17240 0.65 -0.9 226,715 - ABZR87_RS17240 0.65 -1.2 226,715 - ABZR87_RS17240 0.65 +1.7 226,715 - ABZR87_RS17240 0.65 -1.6 226,969 + ABZR87_RS17240 0.82 -1.2 226,969 + ABZR87_RS17240 0.82 -0.3 227,165 - -1.3 227,282 - -0.5 227,301 + -0.8 227,302 - -0.9 227,587 + ABZR87_RS17245 0.28 -0.6 227,587 + ABZR87_RS17245 0.28 -0.9 227,588 - ABZR87_RS17245 0.28 +0.3 227,588 - ABZR87_RS17245 0.28 +1.7 227,644 + ABZR87_RS17245 0.35 +0.5 227,821 + ABZR87_RS17245 0.55 -1.2 227,821 + ABZR87_RS17245 0.55 +0.0 228,285 + -0.1 228,335 + +0.2 228,335 + -0.2 228,335 + +0.3 228,335 + +0.2 228,335 + +0.4 228,335 + -0.6 228,335 + +1.3 228,335 + -0.4 228,335 + -0.6 228,335 + -1.6 228,336 - +0.3 228,336 - -0.6 228,336 - +0.2 228,336 - -1.2 228,336 - +0.1 228,517 + ABZR87_RS17250 0.43 -0.1 228,545 + ABZR87_RS17250 0.49 -0.2 228,545 + ABZR87_RS17250 0.49 +0.5 228,545 + ABZR87_RS17250 0.49 +0.4 228,545 + ABZR87_RS17250 0.49 +0.8 228,545 + ABZR87_RS17250 0.49 +0.7 228,546 - ABZR87_RS17250 0.50 -1.6 228,546 - ABZR87_RS17250 0.50 -0.0 228,546 - ABZR87_RS17250 0.50 +0.9 228,546 - ABZR87_RS17250 0.50 +2.3 228,611 + ABZR87_RS17250 0.64 +1.0 228,611 + ABZR87_RS17250 0.64 -1.5 228,611 + ABZR87_RS17250 0.64 -0.2 228,612 - ABZR87_RS17250 0.64 +0.5 228,620 + ABZR87_RS17250 0.66 +0.7 228,623 + ABZR87_RS17250 0.66 -1.2 228,668 + ABZR87_RS17250 0.76 -1.1 228,668 + ABZR87_RS17250 0.76 +0.1 228,668 + ABZR87_RS17250 0.76 -0.2 228,668 + ABZR87_RS17250 0.76 +0.9 228,669 - ABZR87_RS17250 0.77 -0.8 228,746 + -0.0 228,747 - -0.8 228,747 - -0.2
Or see this region's nucleotide sequence