Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17210 and ABZR87_RS17215 are separated by 985 nucleotides ABZR87_RS17215 and ABZR87_RS17220 overlap by 4 nucleotides
ABZR87_RS17210: ABZR87_RS17210 - glycogen debranching protein GlgX, at 210,238 to 212,550
_RS17210
ABZR87_RS17215: ABZR87_RS17215 - 1,4-alpha-glucan branching protein GlgB, at 213,536 to 215,842
_RS17215
ABZR87_RS17220: ABZR87_RS17220 - maltose alpha-D-glucosyltransferase, at 215,839 to 219,333
_RS17220
Position (kb) 213
214
215
216 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 212.783 kb on + strand at 212.784 kb on - strand at 212.784 kb on - strand at 212.784 kb on - strand at 212.792 kb on + strand at 212.793 kb on - strand at 212.938 kb on + strand at 212.938 kb on + strand at 213.202 kb on + strand at 213.203 kb on - strand at 213.203 kb on - strand at 213.313 kb on - strand at 213.323 kb on - strand at 213.323 kb on - strand at 213.657 kb on + strand at 213.658 kb on - strand at 213.754 kb on + strand at 213.754 kb on + strand at 213.755 kb on - strand at 213.755 kb on - strand at 214.060 kb on - strand, within ABZR87_RS17215 at 214.179 kb on + strand, within ABZR87_RS17215 at 214.222 kb on - strand, within ABZR87_RS17215 at 214.242 kb on + strand, within ABZR87_RS17215 at 214.242 kb on + strand, within ABZR87_RS17215 at 214.242 kb on + strand, within ABZR87_RS17215 at 214.242 kb on + strand, within ABZR87_RS17215 at 214.242 kb on + strand, within ABZR87_RS17215 at 214.281 kb on + strand, within ABZR87_RS17215 at 214.281 kb on + strand, within ABZR87_RS17215 at 214.281 kb on + strand, within ABZR87_RS17215 at 214.282 kb on - strand, within ABZR87_RS17215 at 214.473 kb on + strand, within ABZR87_RS17215 at 214.593 kb on + strand, within ABZR87_RS17215 at 214.593 kb on + strand, within ABZR87_RS17215 at 214.594 kb on - strand, within ABZR87_RS17215 at 214.647 kb on + strand, within ABZR87_RS17215 at 214.648 kb on - strand, within ABZR87_RS17215 at 214.648 kb on - strand, within ABZR87_RS17215 at 214.819 kb on - strand, within ABZR87_RS17215 at 214.819 kb on - strand, within ABZR87_RS17215 at 214.874 kb on - strand, within ABZR87_RS17215 at 214.874 kb on - strand, within ABZR87_RS17215 at 214.893 kb on + strand, within ABZR87_RS17215 at 214.983 kb on + strand, within ABZR87_RS17215 at 214.983 kb on + strand, within ABZR87_RS17215 at 214.983 kb on + strand, within ABZR87_RS17215 at 214.983 kb on + strand, within ABZR87_RS17215 at 214.984 kb on - strand, within ABZR87_RS17215 at 214.984 kb on - strand, within ABZR87_RS17215 at 214.984 kb on - strand, within ABZR87_RS17215 at 214.984 kb on - strand, within ABZR87_RS17215 at 214.984 kb on - strand, within ABZR87_RS17215 at 214.984 kb on - strand, within ABZR87_RS17215 at 214.984 kb on - strand, within ABZR87_RS17215 at 215.446 kb on - strand, within ABZR87_RS17215 at 215.446 kb on - strand, within ABZR87_RS17215 at 215.446 kb on - strand, within ABZR87_RS17215 at 215.529 kb on + strand, within ABZR87_RS17215 at 215.529 kb on + strand, within ABZR87_RS17215 at 215.529 kb on + strand, within ABZR87_RS17215 at 215.529 kb on + strand, within ABZR87_RS17215 at 215.530 kb on - strand, within ABZR87_RS17215 at 215.530 kb on - strand, within ABZR87_RS17215 at 215.530 kb on - strand, within ABZR87_RS17215 at 215.530 kb on - strand, within ABZR87_RS17215 at 215.530 kb on - strand, within ABZR87_RS17215 at 215.530 kb on - strand, within ABZR87_RS17215 at 215.649 kb on + strand at 215.966 kb on + strand at 215.966 kb on + strand at 215.966 kb on + strand at 215.966 kb on + strand at 215.967 kb on + strand at 215.967 kb on - strand at 215.967 kb on - strand at 215.967 kb on - strand at 215.978 kb on + strand at 215.979 kb on - strand at 216.075 kb on - strand at 216.184 kb on + strand at 216.191 kb on + strand, within ABZR87_RS17220 at 216.528 kb on - strand, within ABZR87_RS17220 at 216.767 kb on + strand, within ABZR87_RS17220 at 216.768 kb on - strand, within ABZR87_RS17220
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 212,783 + +0.7 212,784 - +1.1 212,784 - -0.2 212,784 - +0.6 212,792 + -1.3 212,793 - +0.1 212,938 + -0.7 212,938 + +0.3 213,202 + +0.7 213,203 - -1.6 213,203 - -0.9 213,313 - -1.3 213,323 - -0.7 213,323 - +0.1 213,657 + -2.8 213,658 - -1.0 213,754 + +0.4 213,754 + -0.5 213,755 - +0.9 213,755 - -1.5 214,060 - ABZR87_RS17215 0.23 -0.6 214,179 + ABZR87_RS17215 0.28 -1.3 214,222 - ABZR87_RS17215 0.30 -1.0 214,242 + ABZR87_RS17215 0.31 +0.3 214,242 + ABZR87_RS17215 0.31 -2.3 214,242 + ABZR87_RS17215 0.31 -0.9 214,242 + ABZR87_RS17215 0.31 -1.9 214,242 + ABZR87_RS17215 0.31 -2.6 214,281 + ABZR87_RS17215 0.32 -3.3 214,281 + ABZR87_RS17215 0.32 -0.6 214,281 + ABZR87_RS17215 0.32 -2.4 214,282 - ABZR87_RS17215 0.32 -1.1 214,473 + ABZR87_RS17215 0.41 -0.6 214,593 + ABZR87_RS17215 0.46 -2.6 214,593 + ABZR87_RS17215 0.46 -1.2 214,594 - ABZR87_RS17215 0.46 -1.9 214,647 + ABZR87_RS17215 0.48 -2.8 214,648 - ABZR87_RS17215 0.48 -2.4 214,648 - ABZR87_RS17215 0.48 -0.2 214,819 - ABZR87_RS17215 0.56 -2.5 214,819 - ABZR87_RS17215 0.56 -2.6 214,874 - ABZR87_RS17215 0.58 -2.1 214,874 - ABZR87_RS17215 0.58 -2.2 214,893 + ABZR87_RS17215 0.59 -2.6 214,983 + ABZR87_RS17215 0.63 -1.8 214,983 + ABZR87_RS17215 0.63 -1.9 214,983 + ABZR87_RS17215 0.63 -2.7 214,983 + ABZR87_RS17215 0.63 -2.2 214,984 - ABZR87_RS17215 0.63 -1.3 214,984 - ABZR87_RS17215 0.63 -1.2 214,984 - ABZR87_RS17215 0.63 -3.0 214,984 - ABZR87_RS17215 0.63 -2.7 214,984 - ABZR87_RS17215 0.63 -1.3 214,984 - ABZR87_RS17215 0.63 +0.5 214,984 - ABZR87_RS17215 0.63 -2.3 215,446 - ABZR87_RS17215 0.83 -2.9 215,446 - ABZR87_RS17215 0.83 -1.9 215,446 - ABZR87_RS17215 0.83 +0.3 215,529 + ABZR87_RS17215 0.86 -1.7 215,529 + ABZR87_RS17215 0.86 -1.7 215,529 + ABZR87_RS17215 0.86 -2.2 215,529 + ABZR87_RS17215 0.86 -1.5 215,530 - ABZR87_RS17215 0.86 -1.1 215,530 - ABZR87_RS17215 0.86 -1.6 215,530 - ABZR87_RS17215 0.86 -1.0 215,530 - ABZR87_RS17215 0.86 +0.7 215,530 - ABZR87_RS17215 0.86 -1.6 215,530 - ABZR87_RS17215 0.86 -0.6 215,649 + -1.9 215,966 + +1.3 215,966 + -0.2 215,966 + +1.4 215,966 + -0.1 215,967 + +0.8 215,967 - +0.9 215,967 - -0.3 215,967 - +0.5 215,978 + +0.8 215,979 - +1.1 216,075 - +0.9 216,184 + -0.0 216,191 + ABZR87_RS17220 0.10 -2.0 216,528 - ABZR87_RS17220 0.20 +0.4 216,767 + ABZR87_RS17220 0.27 -0.6 216,768 - ABZR87_RS17220 0.27 +1.0
Or see this region's nucleotide sequence