Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17210

Experiment: no_plant_rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17205 and ABZR87_RS17210 overlap by 4 nucleotidesABZR87_RS17210 and ABZR87_RS17215 are separated by 985 nucleotides ABZR87_RS17205: ABZR87_RS17205 - malto-oligosyltrehalose trehalohydrolase, at 208,400 to 210,241 _RS17205 ABZR87_RS17210: ABZR87_RS17210 - glycogen debranching protein GlgX, at 210,238 to 212,550 _RS17210 ABZR87_RS17215: ABZR87_RS17215 - 1,4-alpha-glucan branching protein GlgB, at 213,536 to 215,842 _RS17215 Position (kb) 210 211 212 213Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 209.255 kb on - strand, within ABZR87_RS17205at 209.381 kb on + strand, within ABZR87_RS17205at 209.545 kb on + strand, within ABZR87_RS17205at 209.545 kb on + strand, within ABZR87_RS17205at 209.546 kb on - strand, within ABZR87_RS17205at 209.546 kb on - strand, within ABZR87_RS17205at 209.578 kb on - strand, within ABZR87_RS17205at 209.589 kb on + strand, within ABZR87_RS17205at 209.589 kb on + strand, within ABZR87_RS17205at 209.589 kb on + strand, within ABZR87_RS17205at 209.589 kb on + strand, within ABZR87_RS17205at 209.589 kb on + strand, within ABZR87_RS17205at 209.590 kb on - strand, within ABZR87_RS17205at 209.590 kb on - strand, within ABZR87_RS17205at 209.616 kb on + strand, within ABZR87_RS17205at 209.616 kb on + strand, within ABZR87_RS17205at 209.616 kb on + strand, within ABZR87_RS17205at 209.617 kb on - strand, within ABZR87_RS17205at 209.694 kb on + strand, within ABZR87_RS17205at 209.694 kb on + strand, within ABZR87_RS17205at 209.720 kb on + strand, within ABZR87_RS17205at 209.730 kb on + strand, within ABZR87_RS17205at 209.731 kb on - strand, within ABZR87_RS17205at 209.731 kb on - strand, within ABZR87_RS17205at 209.862 kb on + strand, within ABZR87_RS17205at 209.917 kb on - strand, within ABZR87_RS17205at 209.951 kb on + strand, within ABZR87_RS17205at 210.000 kb on - strand, within ABZR87_RS17205at 210.066 kb on + strandat 210.066 kb on + strandat 210.066 kb on + strandat 210.067 kb on - strandat 210.067 kb on - strandat 210.791 kb on + strand, within ABZR87_RS17210at 210.791 kb on + strand, within ABZR87_RS17210at 210.791 kb on + strand, within ABZR87_RS17210at 210.792 kb on - strand, within ABZR87_RS17210at 210.792 kb on - strand, within ABZR87_RS17210at 210.792 kb on - strand, within ABZR87_RS17210at 210.792 kb on - strand, within ABZR87_RS17210at 210.846 kb on + strand, within ABZR87_RS17210at 210.846 kb on + strand, within ABZR87_RS17210at 210.848 kb on + strand, within ABZR87_RS17210at 210.848 kb on + strand, within ABZR87_RS17210at 210.849 kb on - strand, within ABZR87_RS17210at 210.923 kb on + strand, within ABZR87_RS17210at 210.924 kb on - strand, within ABZR87_RS17210at 211.152 kb on - strand, within ABZR87_RS17210at 211.152 kb on - strand, within ABZR87_RS17210at 211.196 kb on + strand, within ABZR87_RS17210at 211.196 kb on + strand, within ABZR87_RS17210at 211.196 kb on + strand, within ABZR87_RS17210at 211.197 kb on - strand, within ABZR87_RS17210at 211.197 kb on - strand, within ABZR87_RS17210at 211.625 kb on + strand, within ABZR87_RS17210at 211.625 kb on + strand, within ABZR87_RS17210at 211.625 kb on + strand, within ABZR87_RS17210at 211.625 kb on + strand, within ABZR87_RS17210at 211.626 kb on - strand, within ABZR87_RS17210at 211.626 kb on - strand, within ABZR87_RS17210at 211.626 kb on - strand, within ABZR87_RS17210at 211.626 kb on - strand, within ABZR87_RS17210at 211.626 kb on - strand, within ABZR87_RS17210at 211.626 kb on - strand, within ABZR87_RS17210at 211.626 kb on - strand, within ABZR87_RS17210at 211.626 kb on - strand, within ABZR87_RS17210at 211.628 kb on + strand, within ABZR87_RS17210at 211.629 kb on - strand, within ABZR87_RS17210at 211.655 kb on + strand, within ABZR87_RS17210at 211.658 kb on + strand, within ABZR87_RS17210at 211.659 kb on - strand, within ABZR87_RS17210at 211.727 kb on + strand, within ABZR87_RS17210at 211.728 kb on - strand, within ABZR87_RS17210at 211.728 kb on - strand, within ABZR87_RS17210at 211.814 kb on + strand, within ABZR87_RS17210at 211.815 kb on - strand, within ABZR87_RS17210at 211.815 kb on - strand, within ABZR87_RS17210at 211.850 kb on + strand, within ABZR87_RS17210at 211.851 kb on - strand, within ABZR87_RS17210at 211.859 kb on + strand, within ABZR87_RS17210at 211.859 kb on + strand, within ABZR87_RS17210at 211.859 kb on + strand, within ABZR87_RS17210at 211.860 kb on - strand, within ABZR87_RS17210at 212.051 kb on + strand, within ABZR87_RS17210at 212.051 kb on + strand, within ABZR87_RS17210at 212.052 kb on - strand, within ABZR87_RS17210at 212.052 kb on - strand, within ABZR87_RS17210at 212.052 kb on - strand, within ABZR87_RS17210at 212.247 kb on - strand, within ABZR87_RS17210at 212.309 kb on + strand, within ABZR87_RS17210at 212.318 kb on + strand, within ABZR87_RS17210at 212.318 kb on + strand, within ABZR87_RS17210at 212.324 kb on + strandat 212.354 kb on + strandat 212.355 kb on - strandat 212.503 kb on + strandat 212.783 kb on + strandat 212.784 kb on - strandat 212.784 kb on - strandat 212.784 kb on - strandat 212.792 kb on + strandat 212.793 kb on - strandat 212.938 kb on + strandat 212.938 kb on + strandat 213.202 kb on + strandat 213.203 kb on - strandat 213.203 kb on - strandat 213.313 kb on - strandat 213.323 kb on - strandat 213.323 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB
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209,255 - ABZR87_RS17205 0.46 -0.8
209,381 + ABZR87_RS17205 0.53 +1.3
209,545 + ABZR87_RS17205 0.62 -0.1
209,545 + ABZR87_RS17205 0.62 -0.1
209,546 - ABZR87_RS17205 0.62 +0.2
209,546 - ABZR87_RS17205 0.62 -0.7
209,578 - ABZR87_RS17205 0.64 -1.7
209,589 + ABZR87_RS17205 0.65 -1.7
209,589 + ABZR87_RS17205 0.65 -0.9
209,589 + ABZR87_RS17205 0.65 -1.1
209,589 + ABZR87_RS17205 0.65 -0.3
209,589 + ABZR87_RS17205 0.65 -0.0
209,590 - ABZR87_RS17205 0.65 -1.2
209,590 - ABZR87_RS17205 0.65 -2.9
209,616 + ABZR87_RS17205 0.66 -0.1
209,616 + ABZR87_RS17205 0.66 -0.9
209,616 + ABZR87_RS17205 0.66 -0.2
209,617 - ABZR87_RS17205 0.66 -0.3
209,694 + ABZR87_RS17205 0.70 +0.3
209,694 + ABZR87_RS17205 0.70 -0.3
209,720 + ABZR87_RS17205 0.72 -0.2
209,730 + ABZR87_RS17205 0.72 +0.2
209,731 - ABZR87_RS17205 0.72 -0.5
209,731 - ABZR87_RS17205 0.72 -0.1
209,862 + ABZR87_RS17205 0.79 +0.7
209,917 - ABZR87_RS17205 0.82 +1.1
209,951 + ABZR87_RS17205 0.84 +1.6
210,000 - ABZR87_RS17205 0.87 +0.9
210,066 + +0.1
210,066 + +0.3
210,066 + -0.6
210,067 - -0.7
210,067 - -1.7
210,791 + ABZR87_RS17210 0.24 -0.7
210,791 + ABZR87_RS17210 0.24 -2.1
210,791 + ABZR87_RS17210 0.24 +0.9
210,792 - ABZR87_RS17210 0.24 +0.2
210,792 - ABZR87_RS17210 0.24 -2.1
210,792 - ABZR87_RS17210 0.24 -2.3
210,792 - ABZR87_RS17210 0.24 -1.5
210,846 + ABZR87_RS17210 0.26 -0.0
210,846 + ABZR87_RS17210 0.26 +1.2
210,848 + ABZR87_RS17210 0.26 -1.7
210,848 + ABZR87_RS17210 0.26 -1.5
210,849 - ABZR87_RS17210 0.26 -2.0
210,923 + ABZR87_RS17210 0.30 -2.6
210,924 - ABZR87_RS17210 0.30 -1.2
211,152 - ABZR87_RS17210 0.40 -0.5
211,152 - ABZR87_RS17210 0.40 -0.5
211,196 + ABZR87_RS17210 0.41 -1.7
211,196 + ABZR87_RS17210 0.41 -1.3
211,196 + ABZR87_RS17210 0.41 -2.6
211,197 - ABZR87_RS17210 0.41 -1.3
211,197 - ABZR87_RS17210 0.41 +0.2
211,625 + ABZR87_RS17210 0.60 -1.2
211,625 + ABZR87_RS17210 0.60 +0.1
211,625 + ABZR87_RS17210 0.60 -0.9
211,625 + ABZR87_RS17210 0.60 -0.3
211,626 - ABZR87_RS17210 0.60 -2.1
211,626 - ABZR87_RS17210 0.60 -1.5
211,626 - ABZR87_RS17210 0.60 -1.9
211,626 - ABZR87_RS17210 0.60 -1.8
211,626 - ABZR87_RS17210 0.60 -0.7
211,626 - ABZR87_RS17210 0.60 +1.1
211,626 - ABZR87_RS17210 0.60 -0.8
211,626 - ABZR87_RS17210 0.60 -2.5
211,628 + ABZR87_RS17210 0.60 -1.9
211,629 - ABZR87_RS17210 0.60 -2.1
211,655 + ABZR87_RS17210 0.61 -3.0
211,658 + ABZR87_RS17210 0.61 -1.1
211,659 - ABZR87_RS17210 0.61 +0.1
211,727 + ABZR87_RS17210 0.64 -0.3
211,728 - ABZR87_RS17210 0.64 -0.4
211,728 - ABZR87_RS17210 0.64 -1.2
211,814 + ABZR87_RS17210 0.68 +0.1
211,815 - ABZR87_RS17210 0.68 -0.7
211,815 - ABZR87_RS17210 0.68 -2.4
211,850 + ABZR87_RS17210 0.70 -1.6
211,851 - ABZR87_RS17210 0.70 -0.2
211,859 + ABZR87_RS17210 0.70 -3.5
211,859 + ABZR87_RS17210 0.70 -1.1
211,859 + ABZR87_RS17210 0.70 -0.9
211,860 - ABZR87_RS17210 0.70 -2.1
212,051 + ABZR87_RS17210 0.78 -0.3
212,051 + ABZR87_RS17210 0.78 -1.0
212,052 - ABZR87_RS17210 0.78 -1.3
212,052 - ABZR87_RS17210 0.78 -0.9
212,052 - ABZR87_RS17210 0.78 -1.4
212,247 - ABZR87_RS17210 0.87 -1.1
212,309 + ABZR87_RS17210 0.90 -3.9
212,318 + ABZR87_RS17210 0.90 -0.3
212,318 + ABZR87_RS17210 0.90 +0.2
212,324 + -0.5
212,354 + -0.6
212,355 - -1.5
212,503 + -2.8
212,783 + +0.7
212,784 - +1.1
212,784 - -0.2
212,784 - +0.6
212,792 + -1.3
212,793 - +0.1
212,938 + -0.7
212,938 + +0.3
213,202 + +0.7
213,203 - -1.6
213,203 - -0.9
213,313 - -1.3
213,323 - -0.7
213,323 - +0.1

Or see this region's nucleotide sequence