Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17165

Experiment: no_plant_rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17160 and ABZR87_RS17165 are separated by 315 nucleotidesABZR87_RS17165 and ABZR87_RS17170 are separated by 131 nucleotidesABZR87_RS17170 and ABZR87_RS17175 are separated by 19 nucleotides ABZR87_RS17160: ABZR87_RS17160 - ABC transporter substrate-binding protein, at 194,879 to 195,766 _RS17160 ABZR87_RS17165: ABZR87_RS17165 - diguanylate cyclase, at 196,082 to 197,731 _RS17165 ABZR87_RS17170: ABZR87_RS17170 - acyl-CoA thioesterase, at 197,863 to 198,369 _RS17170 ABZR87_RS17175: ABZR87_RS17175 - sensor histidine kinase, at 198,389 to 199,774 _RS17175 Position (kb) 196 197 198Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 195.195 kb on + strand, within ABZR87_RS17160at 195.195 kb on + strand, within ABZR87_RS17160at 195.196 kb on - strand, within ABZR87_RS17160at 195.196 kb on - strand, within ABZR87_RS17160at 195.215 kb on - strand, within ABZR87_RS17160at 195.220 kb on - strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.309 kb on - strand, within ABZR87_RS17160at 195.309 kb on - strand, within ABZR87_RS17160at 195.309 kb on - strand, within ABZR87_RS17160at 195.309 kb on - strand, within ABZR87_RS17160at 195.348 kb on + strand, within ABZR87_RS17160at 195.348 kb on + strand, within ABZR87_RS17160at 195.349 kb on - strand, within ABZR87_RS17160at 195.511 kb on - strand, within ABZR87_RS17160at 195.801 kb on + strandat 195.844 kb on + strandat 195.846 kb on + strandat 195.848 kb on + strandat 195.848 kb on + strandat 195.848 kb on + strandat 195.848 kb on + strandat 195.848 kb on + strandat 195.848 kb on + strandat 195.848 kb on + strandat 195.849 kb on - strandat 195.849 kb on - strandat 195.849 kb on - strandat 195.926 kb on - strandat 195.939 kb on - strandat 195.985 kb on - strandat 196.015 kb on + strandat 196.015 kb on + strandat 196.016 kb on - strandat 196.016 kb on - strandat 196.277 kb on + strand, within ABZR87_RS17165at 196.278 kb on - strand, within ABZR87_RS17165at 196.332 kb on + strand, within ABZR87_RS17165at 196.332 kb on + strand, within ABZR87_RS17165at 196.333 kb on - strand, within ABZR87_RS17165at 196.333 kb on - strand, within ABZR87_RS17165at 196.333 kb on - strand, within ABZR87_RS17165at 196.333 kb on - strand, within ABZR87_RS17165at 196.529 kb on + strand, within ABZR87_RS17165at 196.529 kb on + strand, within ABZR87_RS17165at 196.529 kb on + strand, within ABZR87_RS17165at 196.530 kb on - strand, within ABZR87_RS17165at 196.535 kb on + strand, within ABZR87_RS17165at 196.535 kb on + strand, within ABZR87_RS17165at 196.535 kb on + strand, within ABZR87_RS17165at 196.535 kb on + strand, within ABZR87_RS17165at 196.535 kb on + strand, within ABZR87_RS17165at 196.536 kb on - strand, within ABZR87_RS17165at 196.536 kb on - strand, within ABZR87_RS17165at 196.536 kb on - strand, within ABZR87_RS17165at 196.536 kb on - strand, within ABZR87_RS17165at 196.601 kb on + strand, within ABZR87_RS17165at 196.601 kb on + strand, within ABZR87_RS17165at 196.601 kb on + strand, within ABZR87_RS17165at 196.601 kb on + strand, within ABZR87_RS17165at 196.602 kb on - strand, within ABZR87_RS17165at 196.602 kb on - strand, within ABZR87_RS17165at 196.677 kb on - strand, within ABZR87_RS17165at 196.677 kb on - strand, within ABZR87_RS17165at 196.794 kb on - strand, within ABZR87_RS17165at 197.161 kb on + strand, within ABZR87_RS17165at 197.330 kb on + strand, within ABZR87_RS17165at 197.331 kb on - strand, within ABZR87_RS17165at 197.331 kb on - strand, within ABZR87_RS17165at 197.342 kb on + strand, within ABZR87_RS17165at 197.342 kb on + strand, within ABZR87_RS17165at 197.343 kb on - strand, within ABZR87_RS17165at 197.343 kb on - strand, within ABZR87_RS17165at 197.561 kb on + strand, within ABZR87_RS17165at 197.561 kb on + strand, within ABZR87_RS17165at 197.562 kb on - strand, within ABZR87_RS17165at 197.562 kb on - strand, within ABZR87_RS17165at 197.562 kb on - strand, within ABZR87_RS17165at 197.562 kb on - strand, within ABZR87_RS17165at 197.648 kb on + strandat 197.649 kb on - strandat 197.649 kb on - strandat 197.674 kb on + strandat 197.674 kb on + strandat 197.674 kb on + strandat 197.674 kb on + strandat 197.729 kb on + strandat 197.730 kb on - strandat 197.750 kb on + strandat 197.751 kb on - strandat 197.766 kb on + strandat 197.767 kb on - strandat 197.767 kb on - strandat 197.857 kb on + strandat 197.857 kb on + strandat 197.858 kb on - strandat 197.858 kb on - strandat 197.902 kb on + strandat 197.902 kb on + strandat 197.903 kb on - strandat 197.971 kb on + strand, within ABZR87_RS17170at 197.971 kb on + strand, within ABZR87_RS17170at 197.971 kb on + strand, within ABZR87_RS17170at 197.971 kb on + strand, within ABZR87_RS17170at 197.972 kb on - strand, within ABZR87_RS17170at 197.972 kb on - strand, within ABZR87_RS17170at 198.000 kb on + strand, within ABZR87_RS17170at 198.001 kb on - strand, within ABZR87_RS17170at 198.001 kb on - strand, within ABZR87_RS17170at 198.001 kb on - strand, within ABZR87_RS17170at 198.004 kb on + strand, within ABZR87_RS17170at 198.004 kb on + strand, within ABZR87_RS17170at 198.004 kb on + strand, within ABZR87_RS17170at 198.004 kb on + strand, within ABZR87_RS17170at 198.005 kb on - strand, within ABZR87_RS17170at 198.005 kb on - strand, within ABZR87_RS17170at 198.005 kb on - strand, within ABZR87_RS17170at 198.005 kb on - strand, within ABZR87_RS17170at 198.202 kb on + strand, within ABZR87_RS17170at 198.202 kb on + strand, within ABZR87_RS17170at 198.203 kb on - strand, within ABZR87_RS17170at 198.203 kb on - strand, within ABZR87_RS17170at 198.203 kb on - strand, within ABZR87_RS17170at 198.203 kb on - strand, within ABZR87_RS17170at 198.250 kb on + strand, within ABZR87_RS17170at 198.329 kb on - strandat 198.394 kb on + strandat 198.432 kb on + strandat 198.432 kb on + strandat 198.433 kb on - strandat 198.433 kb on - strandat 198.433 kb on - strandat 198.612 kb on + strand, within ABZR87_RS17175at 198.612 kb on + strand, within ABZR87_RS17175at 198.612 kb on + strand, within ABZR87_RS17175at 198.612 kb on + strand, within ABZR87_RS17175at 198.612 kb on + strand, within ABZR87_RS17175at 198.612 kb on + strand, within ABZR87_RS17175at 198.613 kb on - strand, within ABZR87_RS17175at 198.613 kb on - strand, within ABZR87_RS17175at 198.613 kb on - strand, within ABZR87_RS17175at 198.708 kb on + strand, within ABZR87_RS17175at 198.708 kb on + strand, within ABZR87_RS17175at 198.708 kb on + strand, within ABZR87_RS17175at 198.709 kb on - strand, within ABZR87_RS17175at 198.709 kb on - strand, within ABZR87_RS17175

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB
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195,195 + ABZR87_RS17160 0.36 -1.0
195,195 + ABZR87_RS17160 0.36 -0.1
195,196 - ABZR87_RS17160 0.36 +0.2
195,196 - ABZR87_RS17160 0.36 -0.5
195,215 - ABZR87_RS17160 0.38 +0.6
195,220 - ABZR87_RS17160 0.38 +0.3
195,308 + ABZR87_RS17160 0.48 +1.6
195,308 + ABZR87_RS17160 0.48 +0.1
195,308 + ABZR87_RS17160 0.48 -0.1
195,308 + ABZR87_RS17160 0.48 +0.6
195,308 + ABZR87_RS17160 0.48 +0.6
195,308 + ABZR87_RS17160 0.48 +0.4
195,309 - ABZR87_RS17160 0.48 -1.0
195,309 - ABZR87_RS17160 0.48 +0.2
195,309 - ABZR87_RS17160 0.48 +1.1
195,309 - ABZR87_RS17160 0.48 -1.1
195,348 + ABZR87_RS17160 0.53 -2.0
195,348 + ABZR87_RS17160 0.53 -1.9
195,349 - ABZR87_RS17160 0.53 -1.5
195,511 - ABZR87_RS17160 0.71 +0.5
195,801 + +0.2
195,844 + -1.3
195,846 + -1.4
195,848 + +0.8
195,848 + +1.1
195,848 + +1.1
195,848 + -0.5
195,848 + +0.6
195,848 + +0.5
195,848 + +0.9
195,849 - +0.2
195,849 - +1.2
195,849 - -0.0
195,926 - +1.5
195,939 - -0.1
195,985 - -0.0
196,015 + -0.9
196,015 + -0.7
196,016 - -0.9
196,016 - +0.9
196,277 + ABZR87_RS17165 0.12 +0.0
196,278 - ABZR87_RS17165 0.12 -0.8
196,332 + ABZR87_RS17165 0.15 -0.7
196,332 + ABZR87_RS17165 0.15 -0.2
196,333 - ABZR87_RS17165 0.15 +1.2
196,333 - ABZR87_RS17165 0.15 +0.1
196,333 - ABZR87_RS17165 0.15 +2.1
196,333 - ABZR87_RS17165 0.15 -2.3
196,529 + ABZR87_RS17165 0.27 -0.0
196,529 + ABZR87_RS17165 0.27 +0.3
196,529 + ABZR87_RS17165 0.27 -1.7
196,530 - ABZR87_RS17165 0.27 +0.2
196,535 + ABZR87_RS17165 0.27 -0.0
196,535 + ABZR87_RS17165 0.27 +0.2
196,535 + ABZR87_RS17165 0.27 +0.3
196,535 + ABZR87_RS17165 0.27 +0.5
196,535 + ABZR87_RS17165 0.27 -1.0
196,536 - ABZR87_RS17165 0.28 -1.7
196,536 - ABZR87_RS17165 0.28 +0.5
196,536 - ABZR87_RS17165 0.28 +0.9
196,536 - ABZR87_RS17165 0.28 +1.0
196,601 + ABZR87_RS17165 0.31 +1.0
196,601 + ABZR87_RS17165 0.31 -1.2
196,601 + ABZR87_RS17165 0.31 +0.6
196,601 + ABZR87_RS17165 0.31 -0.4
196,602 - ABZR87_RS17165 0.32 -1.0
196,602 - ABZR87_RS17165 0.32 -0.3
196,677 - ABZR87_RS17165 0.36 +0.6
196,677 - ABZR87_RS17165 0.36 +0.2
196,794 - ABZR87_RS17165 0.43 -0.5
197,161 + ABZR87_RS17165 0.65 -1.5
197,330 + ABZR87_RS17165 0.76 +0.2
197,331 - ABZR87_RS17165 0.76 -0.5
197,331 - ABZR87_RS17165 0.76 +2.7
197,342 + ABZR87_RS17165 0.76 -1.4
197,342 + ABZR87_RS17165 0.76 +0.9
197,343 - ABZR87_RS17165 0.76 -0.4
197,343 - ABZR87_RS17165 0.76 -0.9
197,561 + ABZR87_RS17165 0.90 -0.0
197,561 + ABZR87_RS17165 0.90 +0.5
197,562 - ABZR87_RS17165 0.90 -0.9
197,562 - ABZR87_RS17165 0.90 +0.9
197,562 - ABZR87_RS17165 0.90 +1.2
197,562 - ABZR87_RS17165 0.90 +0.5
197,648 + +0.2
197,649 - +0.9
197,649 - -0.3
197,674 + +0.3
197,674 + +1.7
197,674 + +0.6
197,674 + +0.9
197,729 + +0.6
197,730 - -0.3
197,750 + -0.9
197,751 - -1.2
197,766 + -2.0
197,767 - +0.8
197,767 - -2.1
197,857 + -0.3
197,857 + +0.2
197,858 - -0.5
197,858 - +0.2
197,902 + -1.1
197,902 + +1.3
197,903 - +1.3
197,971 + ABZR87_RS17170 0.21 +0.5
197,971 + ABZR87_RS17170 0.21 -0.2
197,971 + ABZR87_RS17170 0.21 -0.7
197,971 + ABZR87_RS17170 0.21 -0.4
197,972 - ABZR87_RS17170 0.21 +0.6
197,972 - ABZR87_RS17170 0.21 +0.5
198,000 + ABZR87_RS17170 0.27 -0.5
198,001 - ABZR87_RS17170 0.27 +0.5
198,001 - ABZR87_RS17170 0.27 +0.2
198,001 - ABZR87_RS17170 0.27 +2.4
198,004 + ABZR87_RS17170 0.28 +0.6
198,004 + ABZR87_RS17170 0.28 +0.3
198,004 + ABZR87_RS17170 0.28 +1.1
198,004 + ABZR87_RS17170 0.28 +0.0
198,005 - ABZR87_RS17170 0.28 -1.8
198,005 - ABZR87_RS17170 0.28 -0.1
198,005 - ABZR87_RS17170 0.28 -0.0
198,005 - ABZR87_RS17170 0.28 -0.1
198,202 + ABZR87_RS17170 0.67 -0.2
198,202 + ABZR87_RS17170 0.67 -0.1
198,203 - ABZR87_RS17170 0.67 +0.5
198,203 - ABZR87_RS17170 0.67 +0.9
198,203 - ABZR87_RS17170 0.67 +0.4
198,203 - ABZR87_RS17170 0.67 -0.5
198,250 + ABZR87_RS17170 0.76 +0.4
198,329 - +0.3
198,394 + +1.1
198,432 + -1.2
198,432 + -0.4
198,433 - -2.7
198,433 - -3.3
198,433 - +0.8
198,612 + ABZR87_RS17175 0.16 +0.8
198,612 + ABZR87_RS17175 0.16 -0.3
198,612 + ABZR87_RS17175 0.16 -1.3
198,612 + ABZR87_RS17175 0.16 -0.3
198,612 + ABZR87_RS17175 0.16 -0.7
198,612 + ABZR87_RS17175 0.16 -1.1
198,613 - ABZR87_RS17175 0.16 +0.4
198,613 - ABZR87_RS17175 0.16 +1.3
198,613 - ABZR87_RS17175 0.16 -2.3
198,708 + ABZR87_RS17175 0.23 -0.5
198,708 + ABZR87_RS17175 0.23 -1.7
198,708 + ABZR87_RS17175 0.23 -2.8
198,709 - ABZR87_RS17175 0.23 -2.5
198,709 - ABZR87_RS17175 0.23 -0.4

Or see this region's nucleotide sequence