Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16840 and ABZR87_RS16845 are separated by 274 nucleotides ABZR87_RS16845 and ABZR87_RS16850 are separated by 340 nucleotides ABZR87_RS16850 and ABZR87_RS16855 are separated by 39 nucleotides ABZR87_RS16855 and ABZR87_RS16860 overlap by 8 nucleotides
ABZR87_RS16840: ABZR87_RS16840 - hypothetical protein, at 133,807 to 134,085
_RS16840
ABZR87_RS16845: ABZR87_RS16845 - hypothetical protein, at 134,360 to 134,710
_RS16845
ABZR87_RS16850: ABZR87_RS16850 - HD domain-containing phosphohydrolase, at 135,051 to 136,436
_RS16850
ABZR87_RS16855: ABZR87_RS16855 - chemotaxis protein CheC, at 136,476 to 137,087
_RS16855
ABZR87_RS16860: ABZR87_RS16860 - response regulator, at 137,080 to 137,448
_RS16860
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 134.083 kb on + strand at 134.087 kb on + strand at 134.088 kb on - strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.128 kb on + strand at 134.129 kb on + strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.129 kb on - strand at 134.132 kb on + strand at 134.132 kb on + strand at 134.132 kb on + strand at 134.132 kb on + strand at 134.132 kb on + strand at 134.133 kb on - strand at 134.133 kb on - strand at 134.371 kb on + strand at 134.664 kb on + strand, within ABZR87_RS16845 at 134.721 kb on + strand at 134.721 kb on + strand at 134.721 kb on + strand at 134.721 kb on + strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.722 kb on - strand at 134.727 kb on + strand at 134.727 kb on + strand at 134.728 kb on - strand at 134.728 kb on - strand at 134.728 kb on - strand at 134.728 kb on - strand at 134.728 kb on - strand at 134.740 kb on + strand at 134.740 kb on + strand at 134.741 kb on - strand at 134.907 kb on + strand at 134.907 kb on + strand at 134.908 kb on - strand at 134.908 kb on - strand at 134.978 kb on - strand at 135.012 kb on + strand at 135.013 kb on - strand at 135.013 kb on - strand at 135.041 kb on + strand at 135.042 kb on - strand at 135.073 kb on + strand at 135.074 kb on - strand at 135.074 kb on - strand at 135.233 kb on + strand, within ABZR87_RS16850 at 135.233 kb on + strand, within ABZR87_RS16850 at 135.233 kb on + strand, within ABZR87_RS16850 at 135.233 kb on + strand, within ABZR87_RS16850 at 135.234 kb on - strand, within ABZR87_RS16850 at 135.234 kb on - strand, within ABZR87_RS16850 at 135.252 kb on - strand, within ABZR87_RS16850 at 135.329 kb on + strand, within ABZR87_RS16850 at 135.329 kb on + strand, within ABZR87_RS16850 at 135.329 kb on + strand, within ABZR87_RS16850 at 135.330 kb on - strand, within ABZR87_RS16850 at 135.368 kb on + strand, within ABZR87_RS16850 at 135.368 kb on + strand, within ABZR87_RS16850 at 135.368 kb on + strand, within ABZR87_RS16850 at 135.369 kb on - strand, within ABZR87_RS16850 at 135.369 kb on - strand, within ABZR87_RS16850 at 135.476 kb on + strand, within ABZR87_RS16850 at 135.477 kb on - strand, within ABZR87_RS16850 at 135.477 kb on - strand, within ABZR87_RS16850 at 135.568 kb on + strand, within ABZR87_RS16850 at 135.569 kb on - strand, within ABZR87_RS16850 at 135.569 kb on - strand, within ABZR87_RS16850 at 135.595 kb on - strand, within ABZR87_RS16850 at 135.821 kb on + strand, within ABZR87_RS16850 at 135.822 kb on - strand, within ABZR87_RS16850 at 135.822 kb on - strand, within ABZR87_RS16850 at 135.822 kb on - strand, within ABZR87_RS16850 at 135.875 kb on + strand, within ABZR87_RS16850 at 135.951 kb on - strand, within ABZR87_RS16850 at 136.049 kb on - strand, within ABZR87_RS16850 at 136.223 kb on + strand, within ABZR87_RS16850 at 136.224 kb on - strand, within ABZR87_RS16850 at 136.224 kb on - strand, within ABZR87_RS16850 at 136.257 kb on + strand, within ABZR87_RS16850 at 136.302 kb on + strand at 136.427 kb on - strand at 136.427 kb on - strand at 136.427 kb on - strand at 136.605 kb on + strand, within ABZR87_RS16855 at 136.605 kb on + strand, within ABZR87_RS16855 at 136.716 kb on - strand, within ABZR87_RS16855 at 136.716 kb on - strand, within ABZR87_RS16855 at 136.716 kb on - strand, within ABZR87_RS16855 at 136.793 kb on - strand, within ABZR87_RS16855 at 136.793 kb on - strand, within ABZR87_RS16855 at 136.793 kb on - strand, within ABZR87_RS16855 at 137.087 kb on + strand at 137.087 kb on + strand at 137.087 kb on + strand at 137.087 kb on + strand at 137.088 kb on - strand at 137.088 kb on - strand at 137.088 kb on - strand at 137.096 kb on + strand at 137.097 kb on - strand at 137.244 kb on + strand, within ABZR87_RS16860 at 137.244 kb on + strand, within ABZR87_RS16860 at 137.245 kb on - strand, within ABZR87_RS16860
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 134,083 + -2.4 134,087 + -0.4 134,088 - +0.6 134,128 + +0.1 134,128 + -0.4 134,128 + -0.5 134,128 + -0.1 134,128 + +0.3 134,128 + +0.4 134,128 + -0.0 134,128 + +0.4 134,128 + -0.1 134,128 + -0.8 134,128 + +1.7 134,129 + +0.4 134,129 - +0.4 134,129 - -1.2 134,129 - -0.7 134,129 - +1.5 134,129 - +1.0 134,129 - -0.4 134,129 - -0.7 134,129 - +1.1 134,132 + +1.3 134,132 + -1.3 134,132 + +0.7 134,132 + +0.7 134,132 + -1.1 134,133 - -0.3 134,133 - +0.2 134,371 + +0.2 134,664 + ABZR87_RS16845 0.87 +1.0 134,721 + -0.4 134,721 + -1.0 134,721 + -0.7 134,721 + -0.6 134,722 - +1.2 134,722 - -0.6 134,722 - +0.9 134,722 - +0.1 134,722 - -0.4 134,722 - +0.5 134,722 - +0.1 134,722 - +0.9 134,727 + +0.1 134,727 + -1.2 134,728 - -1.6 134,728 - +0.5 134,728 - -1.1 134,728 - -0.5 134,728 - -0.9 134,740 + +0.6 134,740 + +0.4 134,741 - +3.3 134,907 + +0.4 134,907 + -0.0 134,908 - +0.9 134,908 - -0.4 134,978 - -0.1 135,012 + -0.6 135,013 - -0.4 135,013 - -0.4 135,041 + -0.1 135,042 - -0.0 135,073 + +0.6 135,074 - +0.0 135,074 - -0.2 135,233 + ABZR87_RS16850 0.13 -0.2 135,233 + ABZR87_RS16850 0.13 +1.1 135,233 + ABZR87_RS16850 0.13 +0.2 135,233 + ABZR87_RS16850 0.13 +0.0 135,234 - ABZR87_RS16850 0.13 +0.4 135,234 - ABZR87_RS16850 0.13 +0.6 135,252 - ABZR87_RS16850 0.15 -0.5 135,329 + ABZR87_RS16850 0.20 -0.3 135,329 + ABZR87_RS16850 0.20 -0.5 135,329 + ABZR87_RS16850 0.20 -0.0 135,330 - ABZR87_RS16850 0.20 +0.8 135,368 + ABZR87_RS16850 0.23 +0.1 135,368 + ABZR87_RS16850 0.23 +1.1 135,368 + ABZR87_RS16850 0.23 +0.2 135,369 - ABZR87_RS16850 0.23 -0.1 135,369 - ABZR87_RS16850 0.23 -0.8 135,476 + ABZR87_RS16850 0.31 +0.2 135,477 - ABZR87_RS16850 0.31 -1.7 135,477 - ABZR87_RS16850 0.31 +0.7 135,568 + ABZR87_RS16850 0.37 +0.2 135,569 - ABZR87_RS16850 0.37 -1.3 135,569 - ABZR87_RS16850 0.37 -0.7 135,595 - ABZR87_RS16850 0.39 -0.6 135,821 + ABZR87_RS16850 0.56 -0.1 135,822 - ABZR87_RS16850 0.56 +0.2 135,822 - ABZR87_RS16850 0.56 +0.3 135,822 - ABZR87_RS16850 0.56 -1.0 135,875 + ABZR87_RS16850 0.59 -0.6 135,951 - ABZR87_RS16850 0.65 +0.2 136,049 - ABZR87_RS16850 0.72 -0.6 136,223 + ABZR87_RS16850 0.85 +0.7 136,224 - ABZR87_RS16850 0.85 -2.4 136,224 - ABZR87_RS16850 0.85 -0.7 136,257 + ABZR87_RS16850 0.87 +1.1 136,302 + +1.2 136,427 - -1.6 136,427 - -0.2 136,427 - -0.1 136,605 + ABZR87_RS16855 0.21 -1.6 136,605 + ABZR87_RS16855 0.21 +3.6 136,716 - ABZR87_RS16855 0.39 +0.9 136,716 - ABZR87_RS16855 0.39 +0.6 136,716 - ABZR87_RS16855 0.39 +1.3 136,793 - ABZR87_RS16855 0.52 -1.3 136,793 - ABZR87_RS16855 0.52 +0.6 136,793 - ABZR87_RS16855 0.52 -0.1 137,087 + -0.1 137,087 + +1.1 137,087 + -0.1 137,087 + +0.0 137,088 - +0.7 137,088 - +0.7 137,088 - -0.5 137,096 + +0.3 137,097 - -0.3 137,244 + ABZR87_RS16860 0.44 -1.9 137,244 + ABZR87_RS16860 0.44 +1.3 137,245 - ABZR87_RS16860 0.45 -1.5
Or see this region's nucleotide sequence