Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16675 and ABZR87_RS16680 are separated by 107 nucleotides ABZR87_RS16680 and ABZR87_RS16685 are separated by 4 nucleotides ABZR87_RS16685 and ABZR87_RS16690 are separated by 187 nucleotides ABZR87_RS16690 and ABZR87_RS16695 are separated by 93 nucleotides
ABZR87_RS16675: ABZR87_RS16675 - LysR family transcriptional regulator, at 89,019 to 89,897
_RS16675
ABZR87_RS16680: ABZR87_RS16680 - molybdate ABC transporter substrate-binding protein, at 90,005 to 90,778
_RS16680
ABZR87_RS16685: ABZR87_RS16685 - MFS transporter, at 90,783 to 92,081
_RS16685
ABZR87_RS16690: ABZR87_RS16690 - TetR/AcrR family transcriptional regulator, at 92,269 to 92,946
_RS16690
ABZR87_RS16695: ABZR87_RS16695 - MoxR family ATPase, at 93,040 to 94,002
_RS16695
Position (kb) 90
91
92
93 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 89.920 kb on + strand at 89.955 kb on - strand at 89.956 kb on + strand at 89.969 kb on - strand at 89.972 kb on - strand at 90.155 kb on + strand, within ABZR87_RS16680 at 90.155 kb on + strand, within ABZR87_RS16680 at 90.155 kb on + strand, within ABZR87_RS16680 at 90.156 kb on - strand, within ABZR87_RS16680 at 90.190 kb on + strand, within ABZR87_RS16680 at 90.191 kb on - strand, within ABZR87_RS16680 at 90.191 kb on - strand, within ABZR87_RS16680 at 90.458 kb on + strand, within ABZR87_RS16680 at 90.459 kb on - strand, within ABZR87_RS16680 at 90.548 kb on + strand, within ABZR87_RS16680 at 90.548 kb on + strand, within ABZR87_RS16680 at 90.548 kb on + strand, within ABZR87_RS16680 at 90.548 kb on + strand, within ABZR87_RS16680 at 90.548 kb on + strand, within ABZR87_RS16680 at 90.549 kb on - strand, within ABZR87_RS16680 at 90.549 kb on - strand, within ABZR87_RS16680 at 90.549 kb on - strand, within ABZR87_RS16680 at 90.549 kb on - strand, within ABZR87_RS16680 at 90.549 kb on - strand, within ABZR87_RS16680 at 90.549 kb on - strand, within ABZR87_RS16680 at 90.659 kb on + strand, within ABZR87_RS16680 at 90.660 kb on - strand, within ABZR87_RS16680 at 90.719 kb on + strand at 90.719 kb on + strand at 90.719 kb on + strand at 90.720 kb on - strand at 90.720 kb on - strand at 90.720 kb on - strand at 90.720 kb on - strand at 90.720 kb on - strand at 90.754 kb on + strand at 90.754 kb on + strand at 90.758 kb on + strand at 90.758 kb on + strand at 90.758 kb on + strand at 90.758 kb on + strand at 90.759 kb on - strand at 90.759 kb on - strand at 90.901 kb on + strand at 90.901 kb on + strand at 90.901 kb on + strand at 90.902 kb on - strand at 90.902 kb on - strand at 90.902 kb on - strand at 90.902 kb on - strand at 90.902 kb on - strand at 90.902 kb on - strand at 91.069 kb on + strand, within ABZR87_RS16685 at 91.069 kb on + strand, within ABZR87_RS16685 at 91.069 kb on + strand, within ABZR87_RS16685 at 91.070 kb on - strand, within ABZR87_RS16685 at 91.070 kb on - strand, within ABZR87_RS16685 at 91.070 kb on - strand, within ABZR87_RS16685 at 91.117 kb on + strand, within ABZR87_RS16685 at 91.118 kb on - strand, within ABZR87_RS16685 at 91.118 kb on - strand, within ABZR87_RS16685 at 91.118 kb on - strand, within ABZR87_RS16685 at 91.118 kb on - strand, within ABZR87_RS16685 at 91.118 kb on - strand, within ABZR87_RS16685 at 91.126 kb on + strand, within ABZR87_RS16685 at 91.126 kb on + strand, within ABZR87_RS16685 at 91.126 kb on + strand, within ABZR87_RS16685 at 91.126 kb on + strand, within ABZR87_RS16685 at 91.127 kb on - strand, within ABZR87_RS16685 at 91.127 kb on - strand, within ABZR87_RS16685 at 91.127 kb on - strand, within ABZR87_RS16685 at 91.127 kb on - strand, within ABZR87_RS16685 at 91.127 kb on - strand, within ABZR87_RS16685 at 91.153 kb on + strand, within ABZR87_RS16685 at 91.153 kb on + strand, within ABZR87_RS16685 at 91.154 kb on - strand, within ABZR87_RS16685 at 91.154 kb on - strand, within ABZR87_RS16685 at 91.156 kb on + strand, within ABZR87_RS16685 at 91.157 kb on - strand, within ABZR87_RS16685 at 91.157 kb on - strand, within ABZR87_RS16685 at 91.183 kb on + strand, within ABZR87_RS16685 at 91.183 kb on + strand, within ABZR87_RS16685 at 91.184 kb on - strand, within ABZR87_RS16685 at 91.215 kb on - strand, within ABZR87_RS16685 at 91.315 kb on + strand, within ABZR87_RS16685 at 91.316 kb on - strand, within ABZR87_RS16685 at 91.407 kb on + strand, within ABZR87_RS16685 at 91.468 kb on + strand, within ABZR87_RS16685 at 91.468 kb on + strand, within ABZR87_RS16685 at 91.468 kb on + strand, within ABZR87_RS16685 at 91.468 kb on + strand, within ABZR87_RS16685 at 91.468 kb on + strand, within ABZR87_RS16685 at 91.469 kb on - strand, within ABZR87_RS16685 at 91.469 kb on - strand, within ABZR87_RS16685 at 91.515 kb on + strand, within ABZR87_RS16685 at 91.516 kb on - strand, within ABZR87_RS16685 at 91.516 kb on - strand, within ABZR87_RS16685 at 91.576 kb on + strand, within ABZR87_RS16685 at 91.576 kb on + strand, within ABZR87_RS16685 at 91.577 kb on - strand, within ABZR87_RS16685 at 91.577 kb on - strand, within ABZR87_RS16685 at 91.577 kb on - strand, within ABZR87_RS16685 at 91.577 kb on - strand, within ABZR87_RS16685 at 91.849 kb on + strand, within ABZR87_RS16685 at 91.849 kb on + strand, within ABZR87_RS16685 at 91.849 kb on + strand, within ABZR87_RS16685 at 91.849 kb on + strand, within ABZR87_RS16685 at 91.850 kb on - strand, within ABZR87_RS16685 at 91.850 kb on - strand, within ABZR87_RS16685 at 91.850 kb on - strand, within ABZR87_RS16685 at 91.850 kb on - strand, within ABZR87_RS16685 at 91.889 kb on - strand, within ABZR87_RS16685 at 92.041 kb on + strand at 92.042 kb on - strand at 92.042 kb on - strand at 92.136 kb on + strand at 92.175 kb on + strand at 92.178 kb on + strand at 92.178 kb on + strand at 92.179 kb on - strand at 92.262 kb on + strand at 92.262 kb on + strand at 92.262 kb on + strand at 92.262 kb on + strand at 92.262 kb on + strand at 92.263 kb on - strand at 92.263 kb on - strand at 92.263 kb on - strand at 92.263 kb on - strand at 92.263 kb on - strand at 92.263 kb on - strand at 92.358 kb on + strand, within ABZR87_RS16690 at 92.413 kb on + strand, within ABZR87_RS16690 at 92.413 kb on + strand, within ABZR87_RS16690 at 92.414 kb on - strand, within ABZR87_RS16690 at 92.416 kb on + strand, within ABZR87_RS16690 at 92.417 kb on - strand, within ABZR87_RS16690 at 92.417 kb on - strand, within ABZR87_RS16690 at 92.474 kb on - strand, within ABZR87_RS16690 at 92.486 kb on - strand, within ABZR87_RS16690 at 92.524 kb on + strand, within ABZR87_RS16690 at 92.524 kb on + strand, within ABZR87_RS16690 at 92.524 kb on + strand, within ABZR87_RS16690 at 92.557 kb on + strand, within ABZR87_RS16690 at 92.627 kb on + strand, within ABZR87_RS16690 at 92.628 kb on - strand, within ABZR87_RS16690 at 92.836 kb on + strand, within ABZR87_RS16690 at 92.836 kb on + strand, within ABZR87_RS16690 at 92.836 kb on + strand, within ABZR87_RS16690 at 92.839 kb on - strand, within ABZR87_RS16690 at 92.952 kb on + strand at 92.953 kb on - strand at 93.004 kb on + strand at 93.005 kb on - strand at 93.005 kb on - strand at 93.075 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 89,920 + -1.3 89,955 - -0.9 89,956 + +0.2 89,969 - +0.2 89,972 - -2.9 90,155 + ABZR87_RS16680 0.19 +1.0 90,155 + ABZR87_RS16680 0.19 +0.5 90,155 + ABZR87_RS16680 0.19 -0.5 90,156 - ABZR87_RS16680 0.20 +0.3 90,190 + ABZR87_RS16680 0.24 -0.8 90,191 - ABZR87_RS16680 0.24 +0.3 90,191 - ABZR87_RS16680 0.24 -1.4 90,458 + ABZR87_RS16680 0.59 +0.1 90,459 - ABZR87_RS16680 0.59 -0.6 90,548 + ABZR87_RS16680 0.70 -0.6 90,548 + ABZR87_RS16680 0.70 -0.5 90,548 + ABZR87_RS16680 0.70 -0.8 90,548 + ABZR87_RS16680 0.70 -0.7 90,548 + ABZR87_RS16680 0.70 -0.2 90,549 - ABZR87_RS16680 0.70 +0.0 90,549 - ABZR87_RS16680 0.70 +0.6 90,549 - ABZR87_RS16680 0.70 +1.9 90,549 - ABZR87_RS16680 0.70 -1.1 90,549 - ABZR87_RS16680 0.70 +0.1 90,549 - ABZR87_RS16680 0.70 +0.1 90,659 + ABZR87_RS16680 0.84 -0.5 90,660 - ABZR87_RS16680 0.85 +0.4 90,719 + -0.7 90,719 + -0.9 90,719 + +2.1 90,720 - -0.6 90,720 - -1.2 90,720 - +0.5 90,720 - +0.5 90,720 - -0.7 90,754 + +2.7 90,754 + +0.4 90,758 + +0.9 90,758 + -0.9 90,758 + +0.1 90,758 + -0.7 90,759 - +0.1 90,759 - +0.8 90,901 + -0.2 90,901 + -0.5 90,901 + -0.7 90,902 - +0.3 90,902 - -0.6 90,902 - -1.2 90,902 - -1.2 90,902 - -1.5 90,902 - -1.1 91,069 + ABZR87_RS16685 0.22 +0.2 91,069 + ABZR87_RS16685 0.22 +0.1 91,069 + ABZR87_RS16685 0.22 -1.8 91,070 - ABZR87_RS16685 0.22 -1.2 91,070 - ABZR87_RS16685 0.22 -1.8 91,070 - ABZR87_RS16685 0.22 -0.7 91,117 + ABZR87_RS16685 0.26 -0.4 91,118 - ABZR87_RS16685 0.26 +2.1 91,118 - ABZR87_RS16685 0.26 -0.8 91,118 - ABZR87_RS16685 0.26 +0.1 91,118 - ABZR87_RS16685 0.26 -0.6 91,118 - ABZR87_RS16685 0.26 +1.2 91,126 + ABZR87_RS16685 0.26 -1.4 91,126 + ABZR87_RS16685 0.26 +0.2 91,126 + ABZR87_RS16685 0.26 -0.2 91,126 + ABZR87_RS16685 0.26 +0.8 91,127 - ABZR87_RS16685 0.26 +1.0 91,127 - ABZR87_RS16685 0.26 -1.5 91,127 - ABZR87_RS16685 0.26 -1.0 91,127 - ABZR87_RS16685 0.26 +1.1 91,127 - ABZR87_RS16685 0.26 -2.0 91,153 + ABZR87_RS16685 0.28 -1.1 91,153 + ABZR87_RS16685 0.28 -1.8 91,154 - ABZR87_RS16685 0.29 -0.3 91,154 - ABZR87_RS16685 0.29 -1.0 91,156 + ABZR87_RS16685 0.29 +1.1 91,157 - ABZR87_RS16685 0.29 +0.2 91,157 - ABZR87_RS16685 0.29 +0.8 91,183 + ABZR87_RS16685 0.31 +2.8 91,183 + ABZR87_RS16685 0.31 -0.4 91,184 - ABZR87_RS16685 0.31 -0.3 91,215 - ABZR87_RS16685 0.33 -0.5 91,315 + ABZR87_RS16685 0.41 +0.3 91,316 - ABZR87_RS16685 0.41 -1.2 91,407 + ABZR87_RS16685 0.48 +0.4 91,468 + ABZR87_RS16685 0.53 -1.6 91,468 + ABZR87_RS16685 0.53 +0.1 91,468 + ABZR87_RS16685 0.53 -1.4 91,468 + ABZR87_RS16685 0.53 +1.1 91,468 + ABZR87_RS16685 0.53 -0.1 91,469 - ABZR87_RS16685 0.53 -0.7 91,469 - ABZR87_RS16685 0.53 -2.4 91,515 + ABZR87_RS16685 0.56 -0.8 91,516 - ABZR87_RS16685 0.56 -0.2 91,516 - ABZR87_RS16685 0.56 -0.2 91,576 + ABZR87_RS16685 0.61 +0.4 91,576 + ABZR87_RS16685 0.61 -2.6 91,577 - ABZR87_RS16685 0.61 +0.3 91,577 - ABZR87_RS16685 0.61 -2.1 91,577 - ABZR87_RS16685 0.61 -1.2 91,577 - ABZR87_RS16685 0.61 -0.6 91,849 + ABZR87_RS16685 0.82 -1.1 91,849 + ABZR87_RS16685 0.82 -0.8 91,849 + ABZR87_RS16685 0.82 -1.4 91,849 + ABZR87_RS16685 0.82 -0.5 91,850 - ABZR87_RS16685 0.82 +1.7 91,850 - ABZR87_RS16685 0.82 -0.2 91,850 - ABZR87_RS16685 0.82 -1.9 91,850 - ABZR87_RS16685 0.82 -0.9 91,889 - ABZR87_RS16685 0.85 +0.2 92,041 + -0.5 92,042 - -0.8 92,042 - -1.8 92,136 + +0.7 92,175 + +0.2 92,178 + -0.1 92,178 + +0.1 92,179 - +0.7 92,262 + +0.2 92,262 + -1.4 92,262 + -0.9 92,262 + -0.3 92,262 + -0.9 92,263 - -0.1 92,263 - -1.1 92,263 - -0.4 92,263 - +1.1 92,263 - -2.1 92,263 - -0.4 92,358 + ABZR87_RS16690 0.13 -0.9 92,413 + ABZR87_RS16690 0.21 +0.1 92,413 + ABZR87_RS16690 0.21 -0.8 92,414 - ABZR87_RS16690 0.21 -2.3 92,416 + ABZR87_RS16690 0.22 -1.3 92,417 - ABZR87_RS16690 0.22 -0.3 92,417 - ABZR87_RS16690 0.22 -1.9 92,474 - ABZR87_RS16690 0.30 -1.4 92,486 - ABZR87_RS16690 0.32 -0.2 92,524 + ABZR87_RS16690 0.38 -0.5 92,524 + ABZR87_RS16690 0.38 +0.6 92,524 + ABZR87_RS16690 0.38 -1.4 92,557 + ABZR87_RS16690 0.42 -1.8 92,627 + ABZR87_RS16690 0.53 +0.5 92,628 - ABZR87_RS16690 0.53 -0.6 92,836 + ABZR87_RS16690 0.84 -3.0 92,836 + ABZR87_RS16690 0.84 -0.7 92,836 + ABZR87_RS16690 0.84 +0.4 92,839 - ABZR87_RS16690 0.84 -1.2 92,952 + -0.0 92,953 - +0.6 93,004 + +0.9 93,005 - -0.4 93,005 - +0.9 93,075 + +1.3
Or see this region's nucleotide sequence