Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14305 and ABZR87_RS14310 overlap by 4 nucleotides ABZR87_RS14310 and ABZR87_RS14315 are separated by 73 nucleotides
ABZR87_RS14305: ABZR87_RS14305 - acyl-CoA thioester hydrolase/BAAT C-terminal domain-containing protein, at 3,020,475 to 3,022,355
_RS14305
ABZR87_RS14310: ABZR87_RS14310 - peroxidase-related enzyme, at 3,022,352 to 3,022,942
_RS14310
ABZR87_RS14315: ABZR87_RS14315 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 3,023,016 to 3,025,313
_RS14315
Position (kb)
3022
3023 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3021.563 kb on - strand, within ABZR87_RS14305 at 3021.563 kb on - strand, within ABZR87_RS14305 at 3021.563 kb on - strand, within ABZR87_RS14305 at 3021.628 kb on - strand, within ABZR87_RS14305 at 3021.927 kb on + strand, within ABZR87_RS14305 at 3021.928 kb on - strand, within ABZR87_RS14305 at 3021.993 kb on + strand, within ABZR87_RS14305 at 3022.035 kb on + strand, within ABZR87_RS14305 at 3022.036 kb on - strand, within ABZR87_RS14305 at 3022.036 kb on - strand, within ABZR87_RS14305 at 3022.055 kb on + strand, within ABZR87_RS14305 at 3022.496 kb on + strand, within ABZR87_RS14310 at 3022.497 kb on - strand, within ABZR87_RS14310 at 3022.565 kb on + strand, within ABZR87_RS14310 at 3022.565 kb on + strand, within ABZR87_RS14310 at 3022.565 kb on + strand, within ABZR87_RS14310 at 3022.565 kb on + strand, within ABZR87_RS14310 at 3022.566 kb on - strand, within ABZR87_RS14310 at 3022.566 kb on - strand, within ABZR87_RS14310 at 3022.566 kb on - strand, within ABZR87_RS14310 at 3022.797 kb on + strand, within ABZR87_RS14310 at 3022.863 kb on + strand, within ABZR87_RS14310 at 3022.863 kb on + strand, within ABZR87_RS14310 at 3023.129 kb on + strand at 3023.611 kb on + strand, within ABZR87_RS14315 at 3023.612 kb on - strand, within ABZR87_RS14315 at 3023.726 kb on - strand, within ABZR87_RS14315 at 3023.869 kb on + strand, within ABZR87_RS14315 at 3023.870 kb on - strand, within ABZR87_RS14315 at 3023.870 kb on - strand, within ABZR87_RS14315
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 3,021,563 - ABZR87_RS14305 0.58 -0.0 3,021,563 - ABZR87_RS14305 0.58 -2.0 3,021,563 - ABZR87_RS14305 0.58 +0.1 3,021,628 - ABZR87_RS14305 0.61 -0.7 3,021,927 + ABZR87_RS14305 0.77 -1.4 3,021,928 - ABZR87_RS14305 0.77 -1.0 3,021,993 + ABZR87_RS14305 0.81 +0.2 3,022,035 + ABZR87_RS14305 0.83 +1.3 3,022,036 - ABZR87_RS14305 0.83 -1.0 3,022,036 - ABZR87_RS14305 0.83 -0.1 3,022,055 + ABZR87_RS14305 0.84 -0.0 3,022,496 + ABZR87_RS14310 0.24 -0.8 3,022,497 - ABZR87_RS14310 0.25 +0.4 3,022,565 + ABZR87_RS14310 0.36 -1.3 3,022,565 + ABZR87_RS14310 0.36 +3.2 3,022,565 + ABZR87_RS14310 0.36 +0.1 3,022,565 + ABZR87_RS14310 0.36 -1.3 3,022,566 - ABZR87_RS14310 0.36 +1.2 3,022,566 - ABZR87_RS14310 0.36 +0.1 3,022,566 - ABZR87_RS14310 0.36 -0.5 3,022,797 + ABZR87_RS14310 0.75 -0.2 3,022,863 + ABZR87_RS14310 0.86 -0.6 3,022,863 + ABZR87_RS14310 0.86 -1.3 3,023,129 + -1.2 3,023,611 + ABZR87_RS14315 0.26 -1.4 3,023,612 - ABZR87_RS14315 0.26 -0.4 3,023,726 - ABZR87_RS14315 0.31 -0.1 3,023,869 + ABZR87_RS14315 0.37 +0.0 3,023,870 - ABZR87_RS14315 0.37 +0.1 3,023,870 - ABZR87_RS14315 0.37 +0.6
Or see this region's nucleotide sequence