Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS12895 and ABZR87_RS12900 are separated by 157 nucleotides ABZR87_RS12900 and ABZR87_RS12905 are separated by 134 nucleotides
ABZR87_RS12895: ABZR87_RS12895 - ubiquinol oxidase subunit II, at 2,743,629 to 2,744,681
_RS12895
ABZR87_RS12900: ABZR87_RS12900 - MFS transporter, at 2,744,839 to 2,746,158
_RS12900
ABZR87_RS12905: ABZR87_RS12905 - CsbD family protein, at 2,746,293 to 2,746,481
_RS12905
Position (kb)
2744
2745
2746
2747 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2743.882 kb on + strand, within ABZR87_RS12895 at 2743.883 kb on - strand, within ABZR87_RS12895 at 2743.883 kb on - strand, within ABZR87_RS12895 at 2743.883 kb on - strand, within ABZR87_RS12895 at 2743.883 kb on - strand, within ABZR87_RS12895 at 2743.883 kb on - strand, within ABZR87_RS12895 at 2743.883 kb on - strand, within ABZR87_RS12895 at 2743.999 kb on + strand, within ABZR87_RS12895 at 2743.999 kb on + strand, within ABZR87_RS12895 at 2743.999 kb on + strand, within ABZR87_RS12895 at 2744.000 kb on - strand, within ABZR87_RS12895 at 2744.077 kb on + strand, within ABZR87_RS12895 at 2744.078 kb on - strand, within ABZR87_RS12895 at 2744.078 kb on - strand, within ABZR87_RS12895 at 2744.078 kb on - strand, within ABZR87_RS12895 at 2744.078 kb on - strand, within ABZR87_RS12895 at 2744.078 kb on - strand, within ABZR87_RS12895 at 2744.204 kb on - strand, within ABZR87_RS12895 at 2744.422 kb on + strand, within ABZR87_RS12895 at 2744.422 kb on + strand, within ABZR87_RS12895 at 2744.423 kb on - strand, within ABZR87_RS12895 at 2744.423 kb on - strand, within ABZR87_RS12895 at 2744.423 kb on - strand, within ABZR87_RS12895 at 2744.423 kb on - strand, within ABZR87_RS12895 at 2744.423 kb on - strand, within ABZR87_RS12895 at 2744.582 kb on + strand at 2744.582 kb on + strand at 2744.583 kb on - strand at 2744.583 kb on - strand at 2744.591 kb on + strand at 2744.591 kb on + strand at 2744.591 kb on + strand at 2744.591 kb on + strand at 2744.592 kb on - strand at 2744.592 kb on - strand at 2744.592 kb on - strand at 2744.642 kb on + strand at 2744.662 kb on - strand at 2744.755 kb on + strand at 2744.756 kb on - strand at 2744.756 kb on - strand at 2744.799 kb on + strand at 2744.927 kb on + strand at 2744.927 kb on + strand at 2744.927 kb on + strand at 2744.928 kb on - strand at 2744.928 kb on - strand at 2744.928 kb on - strand at 2744.928 kb on - strand at 2744.928 kb on - strand at 2744.928 kb on - strand at 2744.928 kb on - strand at 2744.956 kb on + strand at 2744.957 kb on - strand at 2745.010 kb on + strand, within ABZR87_RS12900 at 2745.010 kb on + strand, within ABZR87_RS12900 at 2745.010 kb on + strand, within ABZR87_RS12900 at 2745.010 kb on + strand, within ABZR87_RS12900 at 2745.011 kb on - strand, within ABZR87_RS12900 at 2745.136 kb on - strand, within ABZR87_RS12900 at 2745.136 kb on - strand, within ABZR87_RS12900 at 2745.202 kb on + strand, within ABZR87_RS12900 at 2745.202 kb on + strand, within ABZR87_RS12900 at 2745.203 kb on - strand, within ABZR87_RS12900 at 2745.203 kb on - strand, within ABZR87_RS12900 at 2745.203 kb on - strand, within ABZR87_RS12900 at 2745.229 kb on + strand, within ABZR87_RS12900 at 2745.229 kb on + strand, within ABZR87_RS12900 at 2745.229 kb on + strand, within ABZR87_RS12900 at 2745.230 kb on - strand, within ABZR87_RS12900 at 2745.230 kb on - strand, within ABZR87_RS12900 at 2745.230 kb on - strand, within ABZR87_RS12900 at 2745.230 kb on - strand, within ABZR87_RS12900 at 2745.324 kb on + strand, within ABZR87_RS12900 at 2745.325 kb on - strand, within ABZR87_RS12900 at 2745.337 kb on + strand, within ABZR87_RS12900 at 2745.406 kb on + strand, within ABZR87_RS12900 at 2745.406 kb on + strand, within ABZR87_RS12900 at 2745.406 kb on + strand, within ABZR87_RS12900 at 2745.406 kb on + strand, within ABZR87_RS12900 at 2745.407 kb on - strand, within ABZR87_RS12900 at 2745.407 kb on - strand, within ABZR87_RS12900 at 2745.407 kb on - strand, within ABZR87_RS12900 at 2745.409 kb on - strand, within ABZR87_RS12900 at 2745.460 kb on + strand, within ABZR87_RS12900 at 2745.461 kb on - strand, within ABZR87_RS12900 at 2745.526 kb on + strand, within ABZR87_RS12900 at 2745.526 kb on + strand, within ABZR87_RS12900 at 2745.527 kb on - strand, within ABZR87_RS12900 at 2745.527 kb on - strand, within ABZR87_RS12900 at 2745.527 kb on - strand, within ABZR87_RS12900 at 2745.634 kb on + strand, within ABZR87_RS12900 at 2745.634 kb on + strand, within ABZR87_RS12900 at 2745.634 kb on + strand, within ABZR87_RS12900 at 2745.635 kb on - strand, within ABZR87_RS12900 at 2745.635 kb on - strand, within ABZR87_RS12900 at 2745.635 kb on - strand, within ABZR87_RS12900 at 2745.635 kb on - strand, within ABZR87_RS12900 at 2745.753 kb on + strand, within ABZR87_RS12900 at 2745.753 kb on + strand, within ABZR87_RS12900 at 2745.754 kb on - strand, within ABZR87_RS12900 at 2745.922 kb on + strand, within ABZR87_RS12900 at 2745.922 kb on + strand, within ABZR87_RS12900 at 2745.922 kb on + strand, within ABZR87_RS12900 at 2745.923 kb on - strand, within ABZR87_RS12900 at 2745.923 kb on - strand, within ABZR87_RS12900 at 2745.952 kb on - strand, within ABZR87_RS12900 at 2745.952 kb on - strand, within ABZR87_RS12900 at 2745.952 kb on - strand, within ABZR87_RS12900 at 2745.976 kb on - strand, within ABZR87_RS12900 at 2746.043 kb on + strand at 2746.084 kb on + strand at 2746.084 kb on + strand at 2746.084 kb on + strand at 2746.084 kb on + strand at 2746.085 kb on - strand at 2746.131 kb on + strand at 2746.131 kb on + strand at 2746.132 kb on - strand at 2746.156 kb on + strand at 2746.157 kb on - strand at 2746.157 kb on - strand at 2746.182 kb on + strand at 2746.182 kb on + strand at 2746.249 kb on + strand at 2746.249 kb on + strand at 2746.249 kb on + strand at 2746.316 kb on + strand, within ABZR87_RS12905 at 2746.317 kb on - strand, within ABZR87_RS12905 at 2746.317 kb on - strand, within ABZR87_RS12905 at 2746.317 kb on - strand, within ABZR87_RS12905 at 2746.317 kb on - strand, within ABZR87_RS12905 at 2746.317 kb on - strand, within ABZR87_RS12905 at 2746.354 kb on + strand, within ABZR87_RS12905 at 2746.509 kb on - strand at 2746.688 kb on - strand at 2746.839 kb on + strand at 2746.876 kb on + strand at 2746.876 kb on + strand at 2746.876 kb on + strand at 2746.877 kb on - strand at 2746.877 kb on - strand at 2746.911 kb on + strand at 2746.912 kb on - strand at 2746.921 kb on + strand at 2746.963 kb on + strand at 2746.993 kb on + strand at 2746.994 kb on - strand at 2747.080 kb on + strand at 2747.081 kb on - strand at 2747.086 kb on - strand at 2747.101 kb on - strand at 2747.108 kb on + strand at 2747.138 kb on + strand at 2747.139 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 2,743,882 + ABZR87_RS12895 0.24 -0.1 2,743,883 - ABZR87_RS12895 0.24 +1.8 2,743,883 - ABZR87_RS12895 0.24 -0.1 2,743,883 - ABZR87_RS12895 0.24 -2.0 2,743,883 - ABZR87_RS12895 0.24 +0.9 2,743,883 - ABZR87_RS12895 0.24 +1.0 2,743,883 - ABZR87_RS12895 0.24 +0.7 2,743,999 + ABZR87_RS12895 0.35 -1.0 2,743,999 + ABZR87_RS12895 0.35 +0.4 2,743,999 + ABZR87_RS12895 0.35 -1.5 2,744,000 - ABZR87_RS12895 0.35 +0.7 2,744,077 + ABZR87_RS12895 0.43 -0.5 2,744,078 - ABZR87_RS12895 0.43 -0.1 2,744,078 - ABZR87_RS12895 0.43 +1.0 2,744,078 - ABZR87_RS12895 0.43 +0.1 2,744,078 - ABZR87_RS12895 0.43 -0.5 2,744,078 - ABZR87_RS12895 0.43 +1.9 2,744,204 - ABZR87_RS12895 0.55 -0.3 2,744,422 + ABZR87_RS12895 0.75 +0.8 2,744,422 + ABZR87_RS12895 0.75 +0.8 2,744,423 - ABZR87_RS12895 0.75 +0.6 2,744,423 - ABZR87_RS12895 0.75 +0.4 2,744,423 - ABZR87_RS12895 0.75 -1.3 2,744,423 - ABZR87_RS12895 0.75 -0.4 2,744,423 - ABZR87_RS12895 0.75 +1.3 2,744,582 + -2.5 2,744,582 + +0.9 2,744,583 - +0.0 2,744,583 - -0.0 2,744,591 + +0.7 2,744,591 + -1.0 2,744,591 + -0.8 2,744,591 + -1.3 2,744,592 - +0.3 2,744,592 - +0.8 2,744,592 - -0.3 2,744,642 + -0.8 2,744,662 - +0.6 2,744,755 + -0.5 2,744,756 - -1.4 2,744,756 - -1.5 2,744,799 + +0.7 2,744,927 + +0.2 2,744,927 + -3.1 2,744,927 + -0.7 2,744,928 - -0.3 2,744,928 - -3.4 2,744,928 - -1.2 2,744,928 - -0.5 2,744,928 - +0.3 2,744,928 - -0.3 2,744,928 - -2.7 2,744,956 + -1.1 2,744,957 - -1.1 2,745,010 + ABZR87_RS12900 0.13 -3.3 2,745,010 + ABZR87_RS12900 0.13 -0.6 2,745,010 + ABZR87_RS12900 0.13 -2.0 2,745,010 + ABZR87_RS12900 0.13 -1.1 2,745,011 - ABZR87_RS12900 0.13 -0.1 2,745,136 - ABZR87_RS12900 0.23 -1.7 2,745,136 - ABZR87_RS12900 0.23 -0.7 2,745,202 + ABZR87_RS12900 0.28 -0.4 2,745,202 + ABZR87_RS12900 0.28 -0.0 2,745,203 - ABZR87_RS12900 0.28 -0.2 2,745,203 - ABZR87_RS12900 0.28 -1.8 2,745,203 - ABZR87_RS12900 0.28 -1.2 2,745,229 + ABZR87_RS12900 0.30 -1.1 2,745,229 + ABZR87_RS12900 0.30 -1.6 2,745,229 + ABZR87_RS12900 0.30 -0.3 2,745,230 - ABZR87_RS12900 0.30 -0.0 2,745,230 - ABZR87_RS12900 0.30 -1.9 2,745,230 - ABZR87_RS12900 0.30 -1.1 2,745,230 - ABZR87_RS12900 0.30 -3.1 2,745,324 + ABZR87_RS12900 0.37 -1.5 2,745,325 - ABZR87_RS12900 0.37 -2.3 2,745,337 + ABZR87_RS12900 0.38 -0.3 2,745,406 + ABZR87_RS12900 0.43 -2.5 2,745,406 + ABZR87_RS12900 0.43 -2.7 2,745,406 + ABZR87_RS12900 0.43 -1.9 2,745,406 + ABZR87_RS12900 0.43 -1.0 2,745,407 - ABZR87_RS12900 0.43 -1.4 2,745,407 - ABZR87_RS12900 0.43 -2.1 2,745,407 - ABZR87_RS12900 0.43 -1.4 2,745,409 - ABZR87_RS12900 0.43 -1.2 2,745,460 + ABZR87_RS12900 0.47 -0.4 2,745,461 - ABZR87_RS12900 0.47 -0.0 2,745,526 + ABZR87_RS12900 0.52 -1.5 2,745,526 + ABZR87_RS12900 0.52 -0.0 2,745,527 - ABZR87_RS12900 0.52 -2.4 2,745,527 - ABZR87_RS12900 0.52 -1.5 2,745,527 - ABZR87_RS12900 0.52 -1.8 2,745,634 + ABZR87_RS12900 0.60 -0.3 2,745,634 + ABZR87_RS12900 0.60 -0.2 2,745,634 + ABZR87_RS12900 0.60 -0.7 2,745,635 - ABZR87_RS12900 0.60 -2.3 2,745,635 - ABZR87_RS12900 0.60 -1.1 2,745,635 - ABZR87_RS12900 0.60 -0.8 2,745,635 - ABZR87_RS12900 0.60 -0.3 2,745,753 + ABZR87_RS12900 0.69 -1.9 2,745,753 + ABZR87_RS12900 0.69 -1.3 2,745,754 - ABZR87_RS12900 0.69 -2.9 2,745,922 + ABZR87_RS12900 0.82 -2.0 2,745,922 + ABZR87_RS12900 0.82 -2.0 2,745,922 + ABZR87_RS12900 0.82 -1.7 2,745,923 - ABZR87_RS12900 0.82 -0.8 2,745,923 - ABZR87_RS12900 0.82 -1.3 2,745,952 - ABZR87_RS12900 0.84 -0.6 2,745,952 - ABZR87_RS12900 0.84 -1.3 2,745,952 - ABZR87_RS12900 0.84 -0.5 2,745,976 - ABZR87_RS12900 0.86 -1.2 2,746,043 + -2.2 2,746,084 + -0.4 2,746,084 + -1.0 2,746,084 + -0.6 2,746,084 + -3.0 2,746,085 - -1.1 2,746,131 + +0.2 2,746,131 + -0.1 2,746,132 - -0.2 2,746,156 + +0.1 2,746,157 - -0.1 2,746,157 - -1.3 2,746,182 + +0.3 2,746,182 + -0.7 2,746,249 + -0.6 2,746,249 + +0.4 2,746,249 + +0.6 2,746,316 + ABZR87_RS12905 0.12 -2.4 2,746,317 - ABZR87_RS12905 0.13 -1.5 2,746,317 - ABZR87_RS12905 0.13 -0.4 2,746,317 - ABZR87_RS12905 0.13 +1.3 2,746,317 - ABZR87_RS12905 0.13 +0.4 2,746,317 - ABZR87_RS12905 0.13 -0.7 2,746,354 + ABZR87_RS12905 0.32 +0.2 2,746,509 - -0.5 2,746,688 - -0.3 2,746,839 + -0.9 2,746,876 + +0.5 2,746,876 + -0.1 2,746,876 + +0.6 2,746,877 - +1.4 2,746,877 - -1.9 2,746,911 + +0.8 2,746,912 - -0.2 2,746,921 + +0.5 2,746,963 + +0.6 2,746,993 + +0.5 2,746,994 - -1.3 2,747,080 + +0.3 2,747,081 - -0.4 2,747,086 - -0.7 2,747,101 - -0.6 2,747,108 + +1.3 2,747,138 + +0.1 2,747,139 - +0.1
Or see this region's nucleotide sequence