Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS12900

Experiment: no_plant_rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS12895 and ABZR87_RS12900 are separated by 157 nucleotidesABZR87_RS12900 and ABZR87_RS12905 are separated by 134 nucleotides ABZR87_RS12895: ABZR87_RS12895 - ubiquinol oxidase subunit II, at 2,743,629 to 2,744,681 _RS12895 ABZR87_RS12900: ABZR87_RS12900 - MFS transporter, at 2,744,839 to 2,746,158 _RS12900 ABZR87_RS12905: ABZR87_RS12905 - CsbD family protein, at 2,746,293 to 2,746,481 _RS12905 Position (kb) 2744 2745 2746 2747Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2743.882 kb on + strand, within ABZR87_RS12895at 2743.883 kb on - strand, within ABZR87_RS12895at 2743.883 kb on - strand, within ABZR87_RS12895at 2743.883 kb on - strand, within ABZR87_RS12895at 2743.883 kb on - strand, within ABZR87_RS12895at 2743.883 kb on - strand, within ABZR87_RS12895at 2743.883 kb on - strand, within ABZR87_RS12895at 2743.999 kb on + strand, within ABZR87_RS12895at 2743.999 kb on + strand, within ABZR87_RS12895at 2743.999 kb on + strand, within ABZR87_RS12895at 2744.000 kb on - strand, within ABZR87_RS12895at 2744.077 kb on + strand, within ABZR87_RS12895at 2744.078 kb on - strand, within ABZR87_RS12895at 2744.078 kb on - strand, within ABZR87_RS12895at 2744.078 kb on - strand, within ABZR87_RS12895at 2744.078 kb on - strand, within ABZR87_RS12895at 2744.078 kb on - strand, within ABZR87_RS12895at 2744.204 kb on - strand, within ABZR87_RS12895at 2744.422 kb on + strand, within ABZR87_RS12895at 2744.422 kb on + strand, within ABZR87_RS12895at 2744.423 kb on - strand, within ABZR87_RS12895at 2744.423 kb on - strand, within ABZR87_RS12895at 2744.423 kb on - strand, within ABZR87_RS12895at 2744.423 kb on - strand, within ABZR87_RS12895at 2744.423 kb on - strand, within ABZR87_RS12895at 2744.582 kb on + strandat 2744.582 kb on + strandat 2744.583 kb on - strandat 2744.583 kb on - strandat 2744.591 kb on + strandat 2744.591 kb on + strandat 2744.591 kb on + strandat 2744.591 kb on + strandat 2744.592 kb on - strandat 2744.592 kb on - strandat 2744.592 kb on - strandat 2744.642 kb on + strandat 2744.662 kb on - strandat 2744.755 kb on + strandat 2744.756 kb on - strandat 2744.756 kb on - strandat 2744.799 kb on + strandat 2744.927 kb on + strandat 2744.927 kb on + strandat 2744.927 kb on + strandat 2744.928 kb on - strandat 2744.928 kb on - strandat 2744.928 kb on - strandat 2744.928 kb on - strandat 2744.928 kb on - strandat 2744.928 kb on - strandat 2744.928 kb on - strandat 2744.956 kb on + strandat 2744.957 kb on - strandat 2745.010 kb on + strand, within ABZR87_RS12900at 2745.010 kb on + strand, within ABZR87_RS12900at 2745.010 kb on + strand, within ABZR87_RS12900at 2745.010 kb on + strand, within ABZR87_RS12900at 2745.011 kb on - strand, within ABZR87_RS12900at 2745.136 kb on - strand, within ABZR87_RS12900at 2745.136 kb on - strand, within ABZR87_RS12900at 2745.202 kb on + strand, within ABZR87_RS12900at 2745.202 kb on + strand, within ABZR87_RS12900at 2745.203 kb on - strand, within ABZR87_RS12900at 2745.203 kb on - strand, within ABZR87_RS12900at 2745.203 kb on - strand, within ABZR87_RS12900at 2745.229 kb on + strand, within ABZR87_RS12900at 2745.229 kb on + strand, within ABZR87_RS12900at 2745.229 kb on + strand, within ABZR87_RS12900at 2745.230 kb on - strand, within ABZR87_RS12900at 2745.230 kb on - strand, within ABZR87_RS12900at 2745.230 kb on - strand, within ABZR87_RS12900at 2745.230 kb on - strand, within ABZR87_RS12900at 2745.324 kb on + strand, within ABZR87_RS12900at 2745.325 kb on - strand, within ABZR87_RS12900at 2745.337 kb on + strand, within ABZR87_RS12900at 2745.406 kb on + strand, within ABZR87_RS12900at 2745.406 kb on + strand, within ABZR87_RS12900at 2745.406 kb on + strand, within ABZR87_RS12900at 2745.406 kb on + strand, within ABZR87_RS12900at 2745.407 kb on - strand, within ABZR87_RS12900at 2745.407 kb on - strand, within ABZR87_RS12900at 2745.407 kb on - strand, within ABZR87_RS12900at 2745.409 kb on - strand, within ABZR87_RS12900at 2745.460 kb on + strand, within ABZR87_RS12900at 2745.461 kb on - strand, within ABZR87_RS12900at 2745.526 kb on + strand, within ABZR87_RS12900at 2745.526 kb on + strand, within ABZR87_RS12900at 2745.527 kb on - strand, within ABZR87_RS12900at 2745.527 kb on - strand, within ABZR87_RS12900at 2745.527 kb on - strand, within ABZR87_RS12900at 2745.634 kb on + strand, within ABZR87_RS12900at 2745.634 kb on + strand, within ABZR87_RS12900at 2745.634 kb on + strand, within ABZR87_RS12900at 2745.635 kb on - strand, within ABZR87_RS12900at 2745.635 kb on - strand, within ABZR87_RS12900at 2745.635 kb on - strand, within ABZR87_RS12900at 2745.635 kb on - strand, within ABZR87_RS12900at 2745.753 kb on + strand, within ABZR87_RS12900at 2745.753 kb on + strand, within ABZR87_RS12900at 2745.754 kb on - strand, within ABZR87_RS12900at 2745.922 kb on + strand, within ABZR87_RS12900at 2745.922 kb on + strand, within ABZR87_RS12900at 2745.922 kb on + strand, within ABZR87_RS12900at 2745.923 kb on - strand, within ABZR87_RS12900at 2745.923 kb on - strand, within ABZR87_RS12900at 2745.952 kb on - strand, within ABZR87_RS12900at 2745.952 kb on - strand, within ABZR87_RS12900at 2745.952 kb on - strand, within ABZR87_RS12900at 2745.976 kb on - strand, within ABZR87_RS12900at 2746.043 kb on + strandat 2746.084 kb on + strandat 2746.084 kb on + strandat 2746.084 kb on + strandat 2746.084 kb on + strandat 2746.085 kb on - strandat 2746.131 kb on + strandat 2746.131 kb on + strandat 2746.132 kb on - strandat 2746.156 kb on + strandat 2746.157 kb on - strandat 2746.157 kb on - strandat 2746.182 kb on + strandat 2746.182 kb on + strandat 2746.249 kb on + strandat 2746.249 kb on + strandat 2746.249 kb on + strandat 2746.316 kb on + strand, within ABZR87_RS12905at 2746.317 kb on - strand, within ABZR87_RS12905at 2746.317 kb on - strand, within ABZR87_RS12905at 2746.317 kb on - strand, within ABZR87_RS12905at 2746.317 kb on - strand, within ABZR87_RS12905at 2746.317 kb on - strand, within ABZR87_RS12905at 2746.354 kb on + strand, within ABZR87_RS12905at 2746.509 kb on - strandat 2746.688 kb on - strandat 2746.839 kb on + strandat 2746.876 kb on + strandat 2746.876 kb on + strandat 2746.876 kb on + strandat 2746.877 kb on - strandat 2746.877 kb on - strandat 2746.911 kb on + strandat 2746.912 kb on - strandat 2746.921 kb on + strandat 2746.963 kb on + strandat 2746.993 kb on + strandat 2746.994 kb on - strandat 2747.080 kb on + strandat 2747.081 kb on - strandat 2747.086 kb on - strandat 2747.101 kb on - strandat 2747.108 kb on + strandat 2747.138 kb on + strandat 2747.139 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB
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2,743,882 + ABZR87_RS12895 0.24 -0.1
2,743,883 - ABZR87_RS12895 0.24 +1.8
2,743,883 - ABZR87_RS12895 0.24 -0.1
2,743,883 - ABZR87_RS12895 0.24 -2.0
2,743,883 - ABZR87_RS12895 0.24 +0.9
2,743,883 - ABZR87_RS12895 0.24 +1.0
2,743,883 - ABZR87_RS12895 0.24 +0.7
2,743,999 + ABZR87_RS12895 0.35 -1.0
2,743,999 + ABZR87_RS12895 0.35 +0.4
2,743,999 + ABZR87_RS12895 0.35 -1.5
2,744,000 - ABZR87_RS12895 0.35 +0.7
2,744,077 + ABZR87_RS12895 0.43 -0.5
2,744,078 - ABZR87_RS12895 0.43 -0.1
2,744,078 - ABZR87_RS12895 0.43 +1.0
2,744,078 - ABZR87_RS12895 0.43 +0.1
2,744,078 - ABZR87_RS12895 0.43 -0.5
2,744,078 - ABZR87_RS12895 0.43 +1.9
2,744,204 - ABZR87_RS12895 0.55 -0.3
2,744,422 + ABZR87_RS12895 0.75 +0.8
2,744,422 + ABZR87_RS12895 0.75 +0.8
2,744,423 - ABZR87_RS12895 0.75 +0.6
2,744,423 - ABZR87_RS12895 0.75 +0.4
2,744,423 - ABZR87_RS12895 0.75 -1.3
2,744,423 - ABZR87_RS12895 0.75 -0.4
2,744,423 - ABZR87_RS12895 0.75 +1.3
2,744,582 + -2.5
2,744,582 + +0.9
2,744,583 - +0.0
2,744,583 - -0.0
2,744,591 + +0.7
2,744,591 + -1.0
2,744,591 + -0.8
2,744,591 + -1.3
2,744,592 - +0.3
2,744,592 - +0.8
2,744,592 - -0.3
2,744,642 + -0.8
2,744,662 - +0.6
2,744,755 + -0.5
2,744,756 - -1.4
2,744,756 - -1.5
2,744,799 + +0.7
2,744,927 + +0.2
2,744,927 + -3.1
2,744,927 + -0.7
2,744,928 - -0.3
2,744,928 - -3.4
2,744,928 - -1.2
2,744,928 - -0.5
2,744,928 - +0.3
2,744,928 - -0.3
2,744,928 - -2.7
2,744,956 + -1.1
2,744,957 - -1.1
2,745,010 + ABZR87_RS12900 0.13 -3.3
2,745,010 + ABZR87_RS12900 0.13 -0.6
2,745,010 + ABZR87_RS12900 0.13 -2.0
2,745,010 + ABZR87_RS12900 0.13 -1.1
2,745,011 - ABZR87_RS12900 0.13 -0.1
2,745,136 - ABZR87_RS12900 0.23 -1.7
2,745,136 - ABZR87_RS12900 0.23 -0.7
2,745,202 + ABZR87_RS12900 0.28 -0.4
2,745,202 + ABZR87_RS12900 0.28 -0.0
2,745,203 - ABZR87_RS12900 0.28 -0.2
2,745,203 - ABZR87_RS12900 0.28 -1.8
2,745,203 - ABZR87_RS12900 0.28 -1.2
2,745,229 + ABZR87_RS12900 0.30 -1.1
2,745,229 + ABZR87_RS12900 0.30 -1.6
2,745,229 + ABZR87_RS12900 0.30 -0.3
2,745,230 - ABZR87_RS12900 0.30 -0.0
2,745,230 - ABZR87_RS12900 0.30 -1.9
2,745,230 - ABZR87_RS12900 0.30 -1.1
2,745,230 - ABZR87_RS12900 0.30 -3.1
2,745,324 + ABZR87_RS12900 0.37 -1.5
2,745,325 - ABZR87_RS12900 0.37 -2.3
2,745,337 + ABZR87_RS12900 0.38 -0.3
2,745,406 + ABZR87_RS12900 0.43 -2.5
2,745,406 + ABZR87_RS12900 0.43 -2.7
2,745,406 + ABZR87_RS12900 0.43 -1.9
2,745,406 + ABZR87_RS12900 0.43 -1.0
2,745,407 - ABZR87_RS12900 0.43 -1.4
2,745,407 - ABZR87_RS12900 0.43 -2.1
2,745,407 - ABZR87_RS12900 0.43 -1.4
2,745,409 - ABZR87_RS12900 0.43 -1.2
2,745,460 + ABZR87_RS12900 0.47 -0.4
2,745,461 - ABZR87_RS12900 0.47 -0.0
2,745,526 + ABZR87_RS12900 0.52 -1.5
2,745,526 + ABZR87_RS12900 0.52 -0.0
2,745,527 - ABZR87_RS12900 0.52 -2.4
2,745,527 - ABZR87_RS12900 0.52 -1.5
2,745,527 - ABZR87_RS12900 0.52 -1.8
2,745,634 + ABZR87_RS12900 0.60 -0.3
2,745,634 + ABZR87_RS12900 0.60 -0.2
2,745,634 + ABZR87_RS12900 0.60 -0.7
2,745,635 - ABZR87_RS12900 0.60 -2.3
2,745,635 - ABZR87_RS12900 0.60 -1.1
2,745,635 - ABZR87_RS12900 0.60 -0.8
2,745,635 - ABZR87_RS12900 0.60 -0.3
2,745,753 + ABZR87_RS12900 0.69 -1.9
2,745,753 + ABZR87_RS12900 0.69 -1.3
2,745,754 - ABZR87_RS12900 0.69 -2.9
2,745,922 + ABZR87_RS12900 0.82 -2.0
2,745,922 + ABZR87_RS12900 0.82 -2.0
2,745,922 + ABZR87_RS12900 0.82 -1.7
2,745,923 - ABZR87_RS12900 0.82 -0.8
2,745,923 - ABZR87_RS12900 0.82 -1.3
2,745,952 - ABZR87_RS12900 0.84 -0.6
2,745,952 - ABZR87_RS12900 0.84 -1.3
2,745,952 - ABZR87_RS12900 0.84 -0.5
2,745,976 - ABZR87_RS12900 0.86 -1.2
2,746,043 + -2.2
2,746,084 + -0.4
2,746,084 + -1.0
2,746,084 + -0.6
2,746,084 + -3.0
2,746,085 - -1.1
2,746,131 + +0.2
2,746,131 + -0.1
2,746,132 - -0.2
2,746,156 + +0.1
2,746,157 - -0.1
2,746,157 - -1.3
2,746,182 + +0.3
2,746,182 + -0.7
2,746,249 + -0.6
2,746,249 + +0.4
2,746,249 + +0.6
2,746,316 + ABZR87_RS12905 0.12 -2.4
2,746,317 - ABZR87_RS12905 0.13 -1.5
2,746,317 - ABZR87_RS12905 0.13 -0.4
2,746,317 - ABZR87_RS12905 0.13 +1.3
2,746,317 - ABZR87_RS12905 0.13 +0.4
2,746,317 - ABZR87_RS12905 0.13 -0.7
2,746,354 + ABZR87_RS12905 0.32 +0.2
2,746,509 - -0.5
2,746,688 - -0.3
2,746,839 + -0.9
2,746,876 + +0.5
2,746,876 + -0.1
2,746,876 + +0.6
2,746,877 - +1.4
2,746,877 - -1.9
2,746,911 + +0.8
2,746,912 - -0.2
2,746,921 + +0.5
2,746,963 + +0.6
2,746,993 + +0.5
2,746,994 - -1.3
2,747,080 + +0.3
2,747,081 - -0.4
2,747,086 - -0.7
2,747,101 - -0.6
2,747,108 + +1.3
2,747,138 + +0.1
2,747,139 - +0.1

Or see this region's nucleotide sequence