Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09960

Experiment: no_plant_rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09955 and ABZR87_RS09960 are separated by 18 nucleotidesABZR87_RS09960 and ABZR87_RS09965 overlap by 11 nucleotides ABZR87_RS09955: ABZR87_RS09955 - LacI family DNA-binding transcriptional regulator, at 2,116,074 to 2,117,114 _RS09955 ABZR87_RS09960: ABZR87_RS09960 - ABC transporter permease, at 2,117,133 to 2,118,140 _RS09960 ABZR87_RS09965: ABZR87_RS09965 - sugar ABC transporter ATP-binding protein, at 2,118,130 to 2,119,710 _RS09965 Position (kb) 2117 2118 2119Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 2116.270 kb on + strand, within ABZR87_RS09955at 2116.270 kb on + strand, within ABZR87_RS09955at 2116.276 kb on + strand, within ABZR87_RS09955at 2116.276 kb on + strand, within ABZR87_RS09955at 2116.276 kb on + strand, within ABZR87_RS09955at 2116.277 kb on - strand, within ABZR87_RS09955at 2116.621 kb on + strand, within ABZR87_RS09955at 2116.621 kb on + strand, within ABZR87_RS09955at 2116.622 kb on - strand, within ABZR87_RS09955at 2116.622 kb on - strand, within ABZR87_RS09955at 2116.623 kb on - strand, within ABZR87_RS09955at 2116.847 kb on - strand, within ABZR87_RS09955at 2116.875 kb on - strand, within ABZR87_RS09955at 2116.952 kb on + strand, within ABZR87_RS09955at 2116.981 kb on + strand, within ABZR87_RS09955at 2116.981 kb on + strand, within ABZR87_RS09955at 2116.981 kb on + strand, within ABZR87_RS09955at 2116.982 kb on - strand, within ABZR87_RS09955at 2117.135 kb on - strandat 2117.135 kb on - strandat 2117.135 kb on - strandat 2117.167 kb on + strandat 2117.167 kb on + strandat 2117.168 kb on - strandat 2117.168 kb on - strandat 2117.370 kb on + strand, within ABZR87_RS09960at 2117.371 kb on - strand, within ABZR87_RS09960at 2117.371 kb on - strand, within ABZR87_RS09960at 2117.467 kb on + strand, within ABZR87_RS09960at 2117.468 kb on - strand, within ABZR87_RS09960at 2117.468 kb on - strand, within ABZR87_RS09960at 2117.468 kb on - strand, within ABZR87_RS09960at 2117.468 kb on - strand, within ABZR87_RS09960at 2117.554 kb on - strand, within ABZR87_RS09960at 2117.656 kb on + strand, within ABZR87_RS09960at 2117.656 kb on + strand, within ABZR87_RS09960at 2117.656 kb on + strand, within ABZR87_RS09960at 2117.656 kb on + strand, within ABZR87_RS09960at 2117.656 kb on + strand, within ABZR87_RS09960at 2117.656 kb on + strand, within ABZR87_RS09960at 2117.657 kb on - strand, within ABZR87_RS09960at 2117.657 kb on - strand, within ABZR87_RS09960at 2117.683 kb on + strand, within ABZR87_RS09960at 2117.683 kb on + strand, within ABZR87_RS09960at 2117.684 kb on - strand, within ABZR87_RS09960at 2117.684 kb on - strand, within ABZR87_RS09960at 2117.738 kb on + strand, within ABZR87_RS09960at 2117.738 kb on + strand, within ABZR87_RS09960at 2118.368 kb on + strand, within ABZR87_RS09965at 2118.368 kb on + strand, within ABZR87_RS09965at 2118.368 kb on + strand, within ABZR87_RS09965at 2118.368 kb on + strand, within ABZR87_RS09965at 2118.369 kb on - strand, within ABZR87_RS09965at 2118.369 kb on - strand, within ABZR87_RS09965at 2118.369 kb on - strand, within ABZR87_RS09965at 2118.746 kb on + strand, within ABZR87_RS09965at 2118.889 kb on - strand, within ABZR87_RS09965at 2119.109 kb on + strand, within ABZR87_RS09965at 2119.109 kb on + strand, within ABZR87_RS09965at 2119.109 kb on + strand, within ABZR87_RS09965at 2119.109 kb on + strand, within ABZR87_RS09965at 2119.109 kb on + strand, within ABZR87_RS09965at 2119.109 kb on + strand, within ABZR87_RS09965at 2119.110 kb on - strand, within ABZR87_RS09965at 2119.110 kb on - strand, within ABZR87_RS09965at 2119.110 kb on - strand, within ABZR87_RS09965at 2119.110 kb on - strand, within ABZR87_RS09965at 2119.110 kb on - strand, within ABZR87_RS09965at 2119.110 kb on - strand, within ABZR87_RS09965at 2119.110 kb on - strand, within ABZR87_RS09965

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB
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2,116,270 + ABZR87_RS09955 0.19 -1.8
2,116,270 + ABZR87_RS09955 0.19 -2.4
2,116,276 + ABZR87_RS09955 0.19 -1.1
2,116,276 + ABZR87_RS09955 0.19 +0.3
2,116,276 + ABZR87_RS09955 0.19 -2.1
2,116,277 - ABZR87_RS09955 0.20 -1.1
2,116,621 + ABZR87_RS09955 0.53 -2.1
2,116,621 + ABZR87_RS09955 0.53 -2.9
2,116,622 - ABZR87_RS09955 0.53 +1.0
2,116,622 - ABZR87_RS09955 0.53 -3.7
2,116,623 - ABZR87_RS09955 0.53 +0.9
2,116,847 - ABZR87_RS09955 0.74 -1.2
2,116,875 - ABZR87_RS09955 0.77 -2.8
2,116,952 + ABZR87_RS09955 0.84 -2.0
2,116,981 + ABZR87_RS09955 0.87 -2.9
2,116,981 + ABZR87_RS09955 0.87 -2.4
2,116,981 + ABZR87_RS09955 0.87 -2.7
2,116,982 - ABZR87_RS09955 0.87 -0.7
2,117,135 - +1.8
2,117,135 - +0.2
2,117,135 - +4.8
2,117,167 + -1.6
2,117,167 + -0.6
2,117,168 - +3.3
2,117,168 - +4.6
2,117,370 + ABZR87_RS09960 0.24 -1.4
2,117,371 - ABZR87_RS09960 0.24 +4.6
2,117,371 - ABZR87_RS09960 0.24 +4.2
2,117,467 + ABZR87_RS09960 0.33 +0.5
2,117,468 - ABZR87_RS09960 0.33 +4.9
2,117,468 - ABZR87_RS09960 0.33 +2.7
2,117,468 - ABZR87_RS09960 0.33 +4.1
2,117,468 - ABZR87_RS09960 0.33 +4.6
2,117,554 - ABZR87_RS09960 0.42 +4.9
2,117,656 + ABZR87_RS09960 0.52 -1.0
2,117,656 + ABZR87_RS09960 0.52 +0.1
2,117,656 + ABZR87_RS09960 0.52 -1.2
2,117,656 + ABZR87_RS09960 0.52 -0.9
2,117,656 + ABZR87_RS09960 0.52 -0.9
2,117,656 + ABZR87_RS09960 0.52 -0.7
2,117,657 - ABZR87_RS09960 0.52 +3.4
2,117,657 - ABZR87_RS09960 0.52 +2.0
2,117,683 + ABZR87_RS09960 0.55 -0.5
2,117,683 + ABZR87_RS09960 0.55 -0.7
2,117,684 - ABZR87_RS09960 0.55 +3.0
2,117,684 - ABZR87_RS09960 0.55 +2.3
2,117,738 + ABZR87_RS09960 0.60 -1.1
2,117,738 + ABZR87_RS09960 0.60 -2.3
2,118,368 + ABZR87_RS09965 0.15 -0.2
2,118,368 + ABZR87_RS09965 0.15 -1.3
2,118,368 + ABZR87_RS09965 0.15 +0.1
2,118,368 + ABZR87_RS09965 0.15 -0.1
2,118,369 - ABZR87_RS09965 0.15 +4.4
2,118,369 - ABZR87_RS09965 0.15 +5.9
2,118,369 - ABZR87_RS09965 0.15 +1.7
2,118,746 + ABZR87_RS09965 0.39 -2.7
2,118,889 - ABZR87_RS09965 0.48 +1.8
2,119,109 + ABZR87_RS09965 0.62 -0.3
2,119,109 + ABZR87_RS09965 0.62 -1.8
2,119,109 + ABZR87_RS09965 0.62 -1.1
2,119,109 + ABZR87_RS09965 0.62 +0.1
2,119,109 + ABZR87_RS09965 0.62 -0.4
2,119,109 + ABZR87_RS09965 0.62 +1.0
2,119,110 - ABZR87_RS09965 0.62 +1.1
2,119,110 - ABZR87_RS09965 0.62 +0.5
2,119,110 - ABZR87_RS09965 0.62 +1.6
2,119,110 - ABZR87_RS09965 0.62 -1.2
2,119,110 - ABZR87_RS09965 0.62 +0.3
2,119,110 - ABZR87_RS09965 0.62 -0.2
2,119,110 - ABZR87_RS09965 0.62 +0.6

Or see this region's nucleotide sequence