Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08940

Experiment: no_plant_rhizosphere sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no_plant_rhizosphere sample 3; outgrowth in LB
1,897,905	+				+2.5
1,897,905	+				+1.3
1,897,906	-				+1.9
1,897,906	-				+2.6
1,897,906	-				+1.2
1,897,906	-				+1.2
1,897,906	-				+2.6
1,897,911	+				+2.9
1,897,911	+				+1.7
1,897,912	-				+2.4
1,897,912	-				+1.4
1,897,912	-				+1.2
1,897,912	-				+1.1
1,897,921	+				+2.3
1,897,922	-				+1.8
1,897,922	-				+1.5
1,897,932	+				+1.5
1,897,941	+				+2.0
1,897,941	+				+1.2
1,897,941	+				+1.8
1,897,941	+				+1.5
1,897,941	+				+1.0
1,897,941	+				+2.3
1,897,941	+				+1.3
1,897,941	+				+1.7
1,897,942	-				+1.6
1,897,942	-				+1.5
1,897,942	-				+1.5
1,897,942	-				+1.8
1,897,942	-				+1.9
1,897,942	-				+1.9
1,897,942	-				+1.4
1,897,942	-				+2.8
1,897,942	-				+2.5
1,897,942	-				+2.0
1,897,960	-				+2.3
1,897,971	+				+0.7
1,897,972	-				+1.7
1,897,972	-				+1.2
1,898,046	+				+2.2
1,898,209	-				+0.5
1,898,270	+				+1.7
1,898,305	-		ABZR87_RS08935	0.14	+0.4
1,898,305	-		ABZR87_RS08935	0.14	+2.3
1,898,305	-		ABZR87_RS08935	0.14	+1.4
1,898,370	+		ABZR87_RS08935	0.24	+4.0
1,898,370	+		ABZR87_RS08935	0.24	+1.7
1,898,371	-		ABZR87_RS08935	0.24	+1.9
1,898,371	-		ABZR87_RS08935	0.24	+2.2
1,898,479	+		ABZR87_RS08935	0.41	-1.0
1,898,479	+		ABZR87_RS08935	0.41	+1.6
1,898,480	-		ABZR87_RS08935	0.41	+1.9
1,898,519	+		ABZR87_RS08935	0.47	+1.7
1,898,519	+		ABZR87_RS08935	0.47	+2.9
1,898,520	-		ABZR87_RS08935	0.47	+0.9
1,898,520	-		ABZR87_RS08935	0.47	-0.1
1,898,520	-		ABZR87_RS08935	0.47	+1.2
1,898,529	+		ABZR87_RS08935	0.49	+1.3
1,898,630	-		ABZR87_RS08935	0.64	+2.8
1,898,630	-		ABZR87_RS08935	0.64	+1.1
1,898,661	+		ABZR87_RS08935	0.69	-0.8
1,898,661	+		ABZR87_RS08935	0.69	+3.0
1,898,888	+				+1.1
1,898,888	+				+1.2
1,898,888	+				+0.7
1,898,888	+				+1.7
1,898,888	+				+0.3
1,898,889	-				+0.6
1,898,889	-				+0.1
1,898,889	-				+2.1
1,898,889	-				+0.4
1,898,889	-				+0.9
1,898,889	-				-1.3
1,898,889	-				+0.7
1,898,889	-				+1.2
1,898,889	-				+0.6
1,898,889	-				+1.2
1,898,913	+				+0.2
1,898,954	+		ABZR87_RS08940	0.10	+2.6
1,898,954	+		ABZR87_RS08940	0.10	+1.9
1,898,954	+		ABZR87_RS08940	0.10	+2.0
1,898,954	+		ABZR87_RS08940	0.10	+1.6
1,898,955	-		ABZR87_RS08940	0.11	+1.5
1,898,955	-		ABZR87_RS08940	0.11	+1.9
1,898,955	-		ABZR87_RS08940	0.11	+2.5
1,898,955	-		ABZR87_RS08940	0.11	+2.4
1,898,969	+		ABZR87_RS08940	0.12	+1.2
1,898,969	+		ABZR87_RS08940	0.12	+1.7
1,898,970	-		ABZR87_RS08940	0.12	+2.8
1,898,970	-		ABZR87_RS08940	0.12	+1.5
1,898,975	+		ABZR87_RS08940	0.13	+1.4
1,898,975	+		ABZR87_RS08940	0.13	+2.8
1,898,976	-		ABZR87_RS08940	0.13	+1.9
1,898,976	-		ABZR87_RS08940	0.13	+2.0
1,898,976	-		ABZR87_RS08940	0.13	+2.8
1,898,976	-		ABZR87_RS08940	0.13	+0.7
1,898,976	-		ABZR87_RS08940	0.13	+2.2
1,898,976	-		ABZR87_RS08940	0.13	+1.3
1,898,976	-		ABZR87_RS08940	0.13	+1.7
1,898,976	-		ABZR87_RS08940	0.13	+1.0
1,898,976	-		ABZR87_RS08940	0.13	+1.3
1,899,043	+		ABZR87_RS08940	0.20	+2.4
1,899,043	+		ABZR87_RS08940	0.20	+1.7
1,899,043	+		ABZR87_RS08940	0.20	+1.8
1,899,043	+		ABZR87_RS08940	0.20	+2.2
1,899,043	+		ABZR87_RS08940	0.20	+1.8
1,899,044	-		ABZR87_RS08940	0.20	+1.1
1,899,044	-		ABZR87_RS08940	0.20	+2.2
1,899,044	-		ABZR87_RS08940	0.20	+1.4
1,899,044	-		ABZR87_RS08940	0.20	+2.4
1,899,044	-		ABZR87_RS08940	0.20	+2.3
1,899,046	+		ABZR87_RS08940	0.20	+1.9
1,899,046	+		ABZR87_RS08940	0.20	+1.0
1,899,046	+		ABZR87_RS08940	0.20	+0.9
1,899,046	+		ABZR87_RS08940	0.20	+2.3
1,899,046	+		ABZR87_RS08940	0.20	+1.8
1,899,046	+		ABZR87_RS08940	0.20	+1.5
1,899,047	-		ABZR87_RS08940	0.20	+2.2
1,899,047	-		ABZR87_RS08940	0.20	+1.8
1,899,068	+		ABZR87_RS08940	0.22	+1.2
1,899,068	+		ABZR87_RS08940	0.22	+1.9
1,899,069	-		ABZR87_RS08940	0.22	+2.8
1,899,069	-		ABZR87_RS08940	0.22	+0.2
1,899,139	+		ABZR87_RS08940	0.30	+1.5
1,899,139	+		ABZR87_RS08940	0.30	+1.8
1,899,145	+		ABZR87_RS08940	0.30	+1.6
1,899,153	-		ABZR87_RS08940	0.31	+1.2
1,899,210	+		ABZR87_RS08940	0.37	+0.2
1,899,254	+		ABZR87_RS08940	0.42	+1.4
1,899,254	+		ABZR87_RS08940	0.42	+1.4
1,899,255	-		ABZR87_RS08940	0.42	+1.6
1,899,255	-		ABZR87_RS08940	0.42	+1.7
1,899,255	-		ABZR87_RS08940	0.42	+2.1
1,899,255	-		ABZR87_RS08940	0.42	+1.6
1,899,255	-		ABZR87_RS08940	0.42	+1.8
1,899,577	-		ABZR87_RS08940	0.76	+2.2
1,899,677	+		ABZR87_RS08940	0.86	+1.3
1,899,677	+		ABZR87_RS08940	0.86	+1.1
1,899,677	+		ABZR87_RS08940	0.86	+1.2
1,899,677	+		ABZR87_RS08940	0.86	+1.3
1,899,678	-		ABZR87_RS08940	0.86	+1.7
1,899,678	-		ABZR87_RS08940	0.86	+1.7
1,899,678	-		ABZR87_RS08940	0.86	+1.5
1,899,698	+		ABZR87_RS08940	0.88	+2.5
1,899,698	+		ABZR87_RS08940	0.88	+2.0
1,899,698	+		ABZR87_RS08940	0.88	+2.1
1,899,699	-		ABZR87_RS08940	0.88	+1.1
1,899,699	-		ABZR87_RS08940	0.88	+1.7
1,899,699	-		ABZR87_RS08940	0.88	+2.3
1,899,825	-				+1.0
1,899,972	-		ABZR87_RS08945	0.25	+1.4
1,900,009	+		ABZR87_RS08945	0.31	+1.8
1,900,009	+		ABZR87_RS08945	0.31	+0.1
1,900,009	+		ABZR87_RS08945	0.31	+2.3
1,900,014	+		ABZR87_RS08945	0.32	+1.4
1,900,015	-		ABZR87_RS08945	0.32	+1.4
1,900,113	+		ABZR87_RS08945	0.48	+1.7
1,900,113	+		ABZR87_RS08945	0.48	+2.2
1,900,114	-		ABZR87_RS08945	0.48	+1.5
1,900,219	+		ABZR87_RS08945	0.64	+1.3
1,900,219	+		ABZR87_RS08945	0.64	+1.2
1,900,219	+		ABZR87_RS08945	0.64	+2.0
1,900,220	-		ABZR87_RS08945	0.64	+1.0
1,900,274	+		ABZR87_RS08945	0.73	+1.8
1,900,275	-		ABZR87_RS08945	0.73	+1.8
1,900,275	-		ABZR87_RS08945	0.73	+1.8
1,900,306	+		ABZR87_RS08945	0.78	+2.4
1,900,306	+		ABZR87_RS08945	0.78	+2.2
1,900,306	+		ABZR87_RS08945	0.78	+1.3
1,900,307	-		ABZR87_RS08945	0.78	+1.5
1,900,307	-		ABZR87_RS08945	0.78	-0.1
1,900,307	-		ABZR87_RS08945	0.78	+0.1
1,900,307	-		ABZR87_RS08945	0.78	+1.2
1,900,307	-		ABZR87_RS08945	0.78	+1.7
1,900,307	-		ABZR87_RS08945	0.78	+1.2
1,900,307	-		ABZR87_RS08945	0.78	+2.7
1,900,331	-		ABZR87_RS08945	0.82	+2.1
1,900,341	+		ABZR87_RS08945	0.83	+0.9
1,900,341	+		ABZR87_RS08945	0.83	+1.7
1,900,341	+		ABZR87_RS08945	0.83	+2.3
1,900,341	+		ABZR87_RS08945	0.83	+1.8
1,900,342	-		ABZR87_RS08945	0.84	+2.4
1,900,515	+				+2.3
1,900,539	+				-2.3
1,900,539	+				+0.5
1,900,539	+				-2.2
1,900,540	-				-0.3
1,900,588	+				+0.7
1,900,589	-				-2.3
1,900,617	+				+1.5
1,900,617	+				+0.5
1,900,617	+				+1.7
1,900,617	+				+1.0
1,900,675	-		ABZR87_RS08950	0.13	-1.9
1,900,695	+		ABZR87_RS08950	0.18	-0.1
1,900,696	-		ABZR87_RS08950	0.18	-1.4