Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06420 and ABZR87_RS06425 are separated by 151 nucleotides ABZR87_RS06425 and ABZR87_RS06430 are separated by 112 nucleotides ABZR87_RS06430 and ABZR87_RS06435 are separated by 319 nucleotides
ABZR87_RS06420: ABZR87_RS06420 - homocysteine S-methyltransferase family protein, at 1,368,572 to 1,369,612
_RS06420
ABZR87_RS06425: ABZR87_RS06425 - rhodanese-like domain-containing protein, at 1,369,764 to 1,370,156
_RS06425
ABZR87_RS06430: ABZR87_RS06430 - DUF3567 domain-containing protein, at 1,370,269 to 1,370,526
_RS06430
ABZR87_RS06435: ABZR87_RS06435 - 3-oxoadipate enol-lactonase, at 1,370,846 to 1,371,685
_RS06435
Position (kb) 1370
1371 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1369.280 kb on + strand, within ABZR87_RS06420 at 1369.296 kb on + strand, within ABZR87_RS06420 at 1369.296 kb on + strand, within ABZR87_RS06420 at 1369.296 kb on + strand, within ABZR87_RS06420 at 1369.296 kb on + strand, within ABZR87_RS06420 at 1369.297 kb on - strand, within ABZR87_RS06420 at 1369.297 kb on - strand, within ABZR87_RS06420 at 1369.317 kb on + strand, within ABZR87_RS06420 at 1369.317 kb on + strand, within ABZR87_RS06420 at 1369.317 kb on + strand, within ABZR87_RS06420 at 1369.317 kb on + strand, within ABZR87_RS06420 at 1369.317 kb on + strand, within ABZR87_RS06420 at 1369.317 kb on + strand, within ABZR87_RS06420 at 1369.317 kb on + strand, within ABZR87_RS06420 at 1369.318 kb on - strand, within ABZR87_RS06420 at 1369.318 kb on - strand, within ABZR87_RS06420 at 1369.318 kb on - strand, within ABZR87_RS06420 at 1369.318 kb on - strand, within ABZR87_RS06420 at 1369.386 kb on + strand, within ABZR87_RS06420 at 1369.386 kb on + strand, within ABZR87_RS06420 at 1369.386 kb on + strand, within ABZR87_RS06420 at 1369.386 kb on + strand, within ABZR87_RS06420 at 1369.387 kb on - strand, within ABZR87_RS06420 at 1369.387 kb on - strand, within ABZR87_RS06420 at 1369.444 kb on + strand, within ABZR87_RS06420 at 1369.488 kb on + strand, within ABZR87_RS06420 at 1369.489 kb on - strand, within ABZR87_RS06420 at 1369.509 kb on + strand at 1369.510 kb on - strand at 1369.510 kb on - strand at 1369.510 kb on - strand at 1369.593 kb on + strand at 1369.594 kb on - strand at 1369.594 kb on - strand at 1369.722 kb on + strand at 1369.722 kb on + strand at 1369.723 kb on - strand at 1369.723 kb on - strand at 1369.723 kb on - strand at 1369.723 kb on - strand at 1369.723 kb on - strand at 1369.724 kb on + strand at 1369.725 kb on - strand at 1369.725 kb on - strand at 1369.728 kb on - strand at 1369.808 kb on + strand, within ABZR87_RS06425 at 1369.808 kb on + strand, within ABZR87_RS06425 at 1369.808 kb on + strand, within ABZR87_RS06425 at 1369.826 kb on + strand, within ABZR87_RS06425 at 1369.827 kb on - strand, within ABZR87_RS06425 at 1370.055 kb on + strand, within ABZR87_RS06425 at 1370.055 kb on + strand, within ABZR87_RS06425 at 1370.055 kb on + strand, within ABZR87_RS06425 at 1370.055 kb on + strand, within ABZR87_RS06425 at 1370.055 kb on + strand, within ABZR87_RS06425 at 1370.055 kb on + strand, within ABZR87_RS06425 at 1370.055 kb on + strand, within ABZR87_RS06425 at 1370.055 kb on + strand, within ABZR87_RS06425 at 1370.055 kb on + strand, within ABZR87_RS06425 at 1370.055 kb on + strand, within ABZR87_RS06425 at 1370.055 kb on + strand, within ABZR87_RS06425 at 1370.056 kb on - strand, within ABZR87_RS06425 at 1370.056 kb on - strand, within ABZR87_RS06425 at 1370.056 kb on - strand, within ABZR87_RS06425 at 1370.056 kb on - strand, within ABZR87_RS06425 at 1370.056 kb on - strand, within ABZR87_RS06425 at 1370.056 kb on - strand, within ABZR87_RS06425 at 1370.056 kb on - strand, within ABZR87_RS06425 at 1370.154 kb on + strand at 1370.154 kb on + strand at 1370.154 kb on + strand at 1370.155 kb on - strand at 1370.155 kb on - strand at 1370.155 kb on - strand at 1370.155 kb on - strand at 1370.155 kb on - strand at 1370.155 kb on - strand at 1370.155 kb on - strand at 1370.161 kb on + strand at 1370.161 kb on + strand at 1370.161 kb on + strand at 1370.161 kb on + strand at 1370.161 kb on + strand at 1370.161 kb on + strand at 1370.161 kb on + strand at 1370.161 kb on + strand at 1370.161 kb on + strand at 1370.162 kb on - strand at 1370.162 kb on - strand at 1370.162 kb on - strand at 1370.162 kb on - strand at 1370.162 kb on - strand at 1370.165 kb on + strand at 1370.166 kb on - strand at 1370.166 kb on - strand at 1370.176 kb on + strand at 1370.296 kb on + strand, within ABZR87_RS06430 at 1370.296 kb on + strand, within ABZR87_RS06430 at 1370.296 kb on + strand, within ABZR87_RS06430 at 1370.297 kb on - strand, within ABZR87_RS06430 at 1370.297 kb on - strand, within ABZR87_RS06430 at 1370.297 kb on - strand, within ABZR87_RS06430 at 1370.297 kb on - strand, within ABZR87_RS06430 at 1370.297 kb on - strand, within ABZR87_RS06430 at 1370.297 kb on - strand, within ABZR87_RS06430 at 1370.297 kb on - strand, within ABZR87_RS06430 at 1370.297 kb on - strand, within ABZR87_RS06430 at 1370.297 kb on - strand, within ABZR87_RS06430 at 1370.297 kb on - strand, within ABZR87_RS06430 at 1370.441 kb on + strand, within ABZR87_RS06430 at 1370.476 kb on + strand, within ABZR87_RS06430 at 1370.476 kb on + strand, within ABZR87_RS06430 at 1370.498 kb on + strand, within ABZR87_RS06430 at 1370.498 kb on + strand, within ABZR87_RS06430 at 1370.498 kb on + strand, within ABZR87_RS06430 at 1370.498 kb on + strand, within ABZR87_RS06430 at 1370.498 kb on + strand, within ABZR87_RS06430 at 1370.498 kb on + strand, within ABZR87_RS06430 at 1370.498 kb on + strand, within ABZR87_RS06430 at 1370.498 kb on + strand, within ABZR87_RS06430 at 1370.498 kb on + strand, within ABZR87_RS06430 at 1370.499 kb on - strand, within ABZR87_RS06430 at 1370.499 kb on - strand, within ABZR87_RS06430 at 1370.499 kb on - strand, within ABZR87_RS06430 at 1370.499 kb on - strand, within ABZR87_RS06430 at 1370.499 kb on - strand, within ABZR87_RS06430 at 1370.499 kb on - strand, within ABZR87_RS06430 at 1370.499 kb on - strand, within ABZR87_RS06430 at 1370.499 kb on - strand, within ABZR87_RS06430 at 1370.499 kb on - strand, within ABZR87_RS06430 at 1370.499 kb on - strand, within ABZR87_RS06430 at 1370.499 kb on - strand, within ABZR87_RS06430 at 1370.499 kb on - strand, within ABZR87_RS06430 at 1370.513 kb on + strand at 1370.513 kb on + strand at 1370.513 kb on + strand at 1370.513 kb on + strand at 1370.513 kb on + strand at 1370.513 kb on + strand at 1370.513 kb on + strand at 1370.513 kb on + strand at 1370.514 kb on - strand at 1370.514 kb on - strand at 1370.574 kb on + strand at 1370.575 kb on - strand at 1370.575 kb on - strand at 1370.575 kb on - strand at 1370.575 kb on - strand at 1370.589 kb on + strand at 1370.590 kb on - strand at 1370.590 kb on - strand at 1370.590 kb on - strand at 1370.590 kb on - strand at 1370.732 kb on + strand at 1370.732 kb on + strand at 1370.733 kb on - strand at 1370.733 kb on - strand at 1370.825 kb on + strand at 1370.825 kb on + strand at 1370.825 kb on + strand at 1370.826 kb on - strand at 1370.826 kb on - strand at 1370.963 kb on - strand, within ABZR87_RS06435 at 1371.008 kb on + strand, within ABZR87_RS06435 at 1371.008 kb on + strand, within ABZR87_RS06435 at 1371.117 kb on + strand, within ABZR87_RS06435 at 1371.133 kb on + strand, within ABZR87_RS06435 at 1371.134 kb on - strand, within ABZR87_RS06435 at 1371.298 kb on - strand, within ABZR87_RS06435 at 1371.298 kb on - strand, within ABZR87_RS06435 at 1371.298 kb on - strand, within ABZR87_RS06435 at 1371.298 kb on - strand, within ABZR87_RS06435 at 1371.298 kb on - strand, within ABZR87_RS06435 at 1371.298 kb on - strand, within ABZR87_RS06435 at 1371.314 kb on + strand, within ABZR87_RS06435 at 1371.314 kb on + strand, within ABZR87_RS06435 at 1371.314 kb on + strand, within ABZR87_RS06435 at 1371.314 kb on + strand, within ABZR87_RS06435 at 1371.314 kb on + strand, within ABZR87_RS06435 at 1371.314 kb on + strand, within ABZR87_RS06435 at 1371.314 kb on + strand, within ABZR87_RS06435 at 1371.315 kb on - strand, within ABZR87_RS06435 at 1371.315 kb on - strand, within ABZR87_RS06435 at 1371.315 kb on - strand, within ABZR87_RS06435 at 1371.315 kb on - strand, within ABZR87_RS06435 at 1371.462 kb on + strand, within ABZR87_RS06435 at 1371.462 kb on + strand, within ABZR87_RS06435 at 1371.463 kb on - strand, within ABZR87_RS06435 at 1371.507 kb on + strand, within ABZR87_RS06435 at 1371.507 kb on + strand, within ABZR87_RS06435
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 1,369,280 + ABZR87_RS06420 0.68 +0.6 1,369,296 + ABZR87_RS06420 0.70 +1.4 1,369,296 + ABZR87_RS06420 0.70 -0.7 1,369,296 + ABZR87_RS06420 0.70 -0.5 1,369,296 + ABZR87_RS06420 0.70 -0.6 1,369,297 - ABZR87_RS06420 0.70 +0.3 1,369,297 - ABZR87_RS06420 0.70 +0.2 1,369,317 + ABZR87_RS06420 0.72 -2.0 1,369,317 + ABZR87_RS06420 0.72 -1.2 1,369,317 + ABZR87_RS06420 0.72 -1.5 1,369,317 + ABZR87_RS06420 0.72 -1.5 1,369,317 + ABZR87_RS06420 0.72 -0.9 1,369,317 + ABZR87_RS06420 0.72 +0.8 1,369,317 + ABZR87_RS06420 0.72 +0.7 1,369,318 - ABZR87_RS06420 0.72 -2.2 1,369,318 - ABZR87_RS06420 0.72 -1.0 1,369,318 - ABZR87_RS06420 0.72 +0.3 1,369,318 - ABZR87_RS06420 0.72 -0.6 1,369,386 + ABZR87_RS06420 0.78 +1.3 1,369,386 + ABZR87_RS06420 0.78 +1.0 1,369,386 + ABZR87_RS06420 0.78 -0.4 1,369,386 + ABZR87_RS06420 0.78 +0.2 1,369,387 - ABZR87_RS06420 0.78 +0.4 1,369,387 - ABZR87_RS06420 0.78 +1.0 1,369,444 + ABZR87_RS06420 0.84 +0.4 1,369,488 + ABZR87_RS06420 0.88 +0.4 1,369,489 - ABZR87_RS06420 0.88 -0.2 1,369,509 + -0.6 1,369,510 - +0.0 1,369,510 - -0.8 1,369,510 - +0.5 1,369,593 + -0.5 1,369,594 - +1.2 1,369,594 - -1.2 1,369,722 + +0.7 1,369,722 + -0.6 1,369,723 - +0.5 1,369,723 - +0.5 1,369,723 - +0.1 1,369,723 - -0.4 1,369,723 - +0.6 1,369,724 + +0.4 1,369,725 - +0.1 1,369,725 - +1.1 1,369,728 - -0.2 1,369,808 + ABZR87_RS06425 0.11 +0.3 1,369,808 + ABZR87_RS06425 0.11 -0.8 1,369,808 + ABZR87_RS06425 0.11 +1.0 1,369,826 + ABZR87_RS06425 0.16 -0.5 1,369,827 - ABZR87_RS06425 0.16 -1.1 1,370,055 + ABZR87_RS06425 0.74 -1.5 1,370,055 + ABZR87_RS06425 0.74 -0.1 1,370,055 + ABZR87_RS06425 0.74 -1.1 1,370,055 + ABZR87_RS06425 0.74 +0.9 1,370,055 + ABZR87_RS06425 0.74 +0.9 1,370,055 + ABZR87_RS06425 0.74 -0.7 1,370,055 + ABZR87_RS06425 0.74 +0.2 1,370,055 + ABZR87_RS06425 0.74 +0.0 1,370,055 + ABZR87_RS06425 0.74 +0.3 1,370,055 + ABZR87_RS06425 0.74 +1.3 1,370,055 + ABZR87_RS06425 0.74 +0.9 1,370,056 - ABZR87_RS06425 0.74 +1.0 1,370,056 - ABZR87_RS06425 0.74 -1.1 1,370,056 - ABZR87_RS06425 0.74 +0.6 1,370,056 - ABZR87_RS06425 0.74 -2.4 1,370,056 - ABZR87_RS06425 0.74 -0.4 1,370,056 - ABZR87_RS06425 0.74 +0.5 1,370,056 - ABZR87_RS06425 0.74 -0.0 1,370,154 + -0.1 1,370,154 + -0.5 1,370,154 + -0.2 1,370,155 - +0.5 1,370,155 - +0.2 1,370,155 - +0.8 1,370,155 - -0.6 1,370,155 - -0.1 1,370,155 - +0.5 1,370,155 - -1.4 1,370,161 + -1.1 1,370,161 + +0.3 1,370,161 + +0.2 1,370,161 + +1.3 1,370,161 + -0.3 1,370,161 + -0.1 1,370,161 + -1.2 1,370,161 + -1.5 1,370,161 + -3.2 1,370,162 - -0.6 1,370,162 - -0.3 1,370,162 - +1.5 1,370,162 - +0.8 1,370,162 - -0.9 1,370,165 + -1.4 1,370,166 - -1.0 1,370,166 - -0.8 1,370,176 + -0.7 1,370,296 + ABZR87_RS06430 0.10 +0.3 1,370,296 + ABZR87_RS06430 0.10 -0.4 1,370,296 + ABZR87_RS06430 0.10 +1.2 1,370,297 - ABZR87_RS06430 0.11 -1.7 1,370,297 - ABZR87_RS06430 0.11 +0.7 1,370,297 - ABZR87_RS06430 0.11 -0.3 1,370,297 - ABZR87_RS06430 0.11 -0.2 1,370,297 - ABZR87_RS06430 0.11 -2.1 1,370,297 - ABZR87_RS06430 0.11 -0.3 1,370,297 - ABZR87_RS06430 0.11 +1.1 1,370,297 - ABZR87_RS06430 0.11 +0.6 1,370,297 - ABZR87_RS06430 0.11 +0.6 1,370,297 - ABZR87_RS06430 0.11 -0.9 1,370,441 + ABZR87_RS06430 0.67 +0.1 1,370,476 + ABZR87_RS06430 0.80 -0.6 1,370,476 + ABZR87_RS06430 0.80 -1.4 1,370,498 + ABZR87_RS06430 0.89 +0.6 1,370,498 + ABZR87_RS06430 0.89 -1.1 1,370,498 + ABZR87_RS06430 0.89 -0.6 1,370,498 + ABZR87_RS06430 0.89 +0.6 1,370,498 + ABZR87_RS06430 0.89 +0.4 1,370,498 + ABZR87_RS06430 0.89 -0.4 1,370,498 + ABZR87_RS06430 0.89 -1.3 1,370,498 + ABZR87_RS06430 0.89 -0.4 1,370,498 + ABZR87_RS06430 0.89 -1.0 1,370,499 - ABZR87_RS06430 0.89 +0.7 1,370,499 - ABZR87_RS06430 0.89 +0.0 1,370,499 - ABZR87_RS06430 0.89 +1.5 1,370,499 - ABZR87_RS06430 0.89 -0.8 1,370,499 - ABZR87_RS06430 0.89 -1.6 1,370,499 - ABZR87_RS06430 0.89 -0.1 1,370,499 - ABZR87_RS06430 0.89 +0.3 1,370,499 - ABZR87_RS06430 0.89 -0.4 1,370,499 - ABZR87_RS06430 0.89 -1.1 1,370,499 - ABZR87_RS06430 0.89 +0.4 1,370,499 - ABZR87_RS06430 0.89 +0.7 1,370,499 - ABZR87_RS06430 0.89 +0.0 1,370,513 + +0.3 1,370,513 + +0.0 1,370,513 + +0.4 1,370,513 + -3.3 1,370,513 + -0.5 1,370,513 + -0.3 1,370,513 + +0.4 1,370,513 + -1.0 1,370,514 - +0.2 1,370,514 - +0.5 1,370,574 + -1.2 1,370,575 - +0.9 1,370,575 - +1.1 1,370,575 - +0.0 1,370,575 - +0.5 1,370,589 + -0.3 1,370,590 - +1.3 1,370,590 - -0.3 1,370,590 - +0.7 1,370,590 - +0.5 1,370,732 + -0.8 1,370,732 + +0.1 1,370,733 - +0.7 1,370,733 - +0.0 1,370,825 + -1.2 1,370,825 + -0.6 1,370,825 + -0.3 1,370,826 - +0.8 1,370,826 - -0.4 1,370,963 - ABZR87_RS06435 0.14 +0.6 1,371,008 + ABZR87_RS06435 0.19 -1.2 1,371,008 + ABZR87_RS06435 0.19 -0.5 1,371,117 + ABZR87_RS06435 0.32 +1.4 1,371,133 + ABZR87_RS06435 0.34 +0.8 1,371,134 - ABZR87_RS06435 0.34 -1.5 1,371,298 - ABZR87_RS06435 0.54 -0.9 1,371,298 - ABZR87_RS06435 0.54 -1.6 1,371,298 - ABZR87_RS06435 0.54 -0.1 1,371,298 - ABZR87_RS06435 0.54 +0.5 1,371,298 - ABZR87_RS06435 0.54 +0.1 1,371,298 - ABZR87_RS06435 0.54 -0.0 1,371,314 + ABZR87_RS06435 0.56 -1.2 1,371,314 + ABZR87_RS06435 0.56 -0.9 1,371,314 + ABZR87_RS06435 0.56 +0.3 1,371,314 + ABZR87_RS06435 0.56 +0.2 1,371,314 + ABZR87_RS06435 0.56 +0.6 1,371,314 + ABZR87_RS06435 0.56 +0.9 1,371,314 + ABZR87_RS06435 0.56 -2.3 1,371,315 - ABZR87_RS06435 0.56 -0.8 1,371,315 - ABZR87_RS06435 0.56 -0.3 1,371,315 - ABZR87_RS06435 0.56 +0.8 1,371,315 - ABZR87_RS06435 0.56 +0.5 1,371,462 + ABZR87_RS06435 0.73 -2.0 1,371,462 + ABZR87_RS06435 0.73 +0.0 1,371,463 - ABZR87_RS06435 0.73 -0.2 1,371,507 + ABZR87_RS06435 0.79 -0.2 1,371,507 + ABZR87_RS06435 0.79 +1.0
Or see this region's nucleotide sequence