Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05300

Experiment: no_plant_rhizosphere sample 3; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no_plant_rhizosphere sample 3; outgrowth in LB
1,114,527	+		ABZR87_RS05295	0.47	+0.9
1,114,527	+		ABZR87_RS05295	0.47	+0.2
1,114,528	-		ABZR87_RS05295	0.47	-0.3
1,114,528	-		ABZR87_RS05295	0.47	-0.4
1,115,394	+				-1.4
1,115,469	+				+2.2
1,115,469	+				-0.1
1,115,469	+				-1.2
1,115,469	+				-0.0
1,115,470	-				+1.0
1,115,470	-				+0.5
1,115,470	-				+0.1
1,115,470	-				+0.3
1,115,470	-				+0.8
1,115,470	-				-0.4
1,115,470	-				-1.0
1,115,470	-				+0.6
1,115,499	+		ABZR87_RS05300	0.12	-0.1
1,115,499	+		ABZR87_RS05300	0.12	+1.6
1,115,499	+		ABZR87_RS05300	0.12	+0.0
1,115,499	+		ABZR87_RS05300	0.12	-0.7
1,115,499	+		ABZR87_RS05300	0.12	+0.3
1,115,500	-		ABZR87_RS05300	0.12	-1.9
1,115,537	+		ABZR87_RS05300	0.16	+0.5
1,115,537	+		ABZR87_RS05300	0.16	+1.2
1,115,537	+		ABZR87_RS05300	0.16	-1.0
1,115,537	+		ABZR87_RS05300	0.16	+0.3
1,115,537	+		ABZR87_RS05300	0.16	+1.1
1,115,538	-		ABZR87_RS05300	0.16	+1.1
1,115,538	-		ABZR87_RS05300	0.16	+0.7
1,115,538	-		ABZR87_RS05300	0.16	+1.1
1,115,538	-		ABZR87_RS05300	0.16	-0.6
1,115,538	-		ABZR87_RS05300	0.16	+0.0
1,115,538	-		ABZR87_RS05300	0.16	-2.4
1,115,541	+		ABZR87_RS05300	0.17	-0.6
1,115,541	+		ABZR87_RS05300	0.17	-0.1
1,115,541	+		ABZR87_RS05300	0.17	-0.2
1,115,541	+		ABZR87_RS05300	0.17	+0.9
1,115,541	+		ABZR87_RS05300	0.17	-0.0
1,115,542	-		ABZR87_RS05300	0.17	-0.3
1,115,542	-		ABZR87_RS05300	0.17	+0.6
1,115,542	-		ABZR87_RS05300	0.17	-0.4
1,115,542	-		ABZR87_RS05300	0.17	+0.5
1,115,542	-		ABZR87_RS05300	0.17	-0.2
1,115,589	+		ABZR87_RS05300	0.22	+0.6
1,115,590	-		ABZR87_RS05300	0.22	-2.1
1,115,590	-		ABZR87_RS05300	0.22	+0.1
1,115,590	-		ABZR87_RS05300	0.22	+0.8
1,115,590	-		ABZR87_RS05300	0.22	-0.0
1,115,871	+		ABZR87_RS05300	0.53	-0.3
1,115,871	+		ABZR87_RS05300	0.53	+0.6
1,115,871	+		ABZR87_RS05300	0.53	-0.6
1,115,871	+		ABZR87_RS05300	0.53	+0.6
1,115,871	+		ABZR87_RS05300	0.53	-0.5
1,115,871	+		ABZR87_RS05300	0.53	-0.9
1,115,871	+		ABZR87_RS05300	0.53	+0.4
1,115,872	-		ABZR87_RS05300	0.54	-0.2
1,115,872	-		ABZR87_RS05300	0.54	-0.8
1,115,872	-		ABZR87_RS05300	0.54	-0.5
1,115,872	-		ABZR87_RS05300	0.54	-0.9
1,115,872	-		ABZR87_RS05300	0.54	-1.7
1,115,872	-		ABZR87_RS05300	0.54	-0.9
1,115,872	-		ABZR87_RS05300	0.54	+0.0
1,115,872	-		ABZR87_RS05300	0.54	+0.5
1,115,872	-		ABZR87_RS05300	0.54	-0.6
1,115,923	+		ABZR87_RS05300	0.59	-0.4
1,115,924	-		ABZR87_RS05300	0.59	-0.1
1,115,924	-		ABZR87_RS05300	0.59	-0.5
1,116,009	+		ABZR87_RS05300	0.69	+0.5
1,116,010	-		ABZR87_RS05300	0.69	-0.2
1,116,010	-		ABZR87_RS05300	0.69	-0.6
1,116,010	-		ABZR87_RS05300	0.69	-0.3
1,116,018	+		ABZR87_RS05300	0.70	-0.4
1,116,018	+		ABZR87_RS05300	0.70	+0.3
1,116,018	+		ABZR87_RS05300	0.70	-2.0
1,116,019	-		ABZR87_RS05300	0.70	+1.3
1,116,019	-		ABZR87_RS05300	0.70	-0.1
1,116,019	-		ABZR87_RS05300	0.70	-1.8
1,116,019	-		ABZR87_RS05300	0.70	-0.8
1,116,096	+		ABZR87_RS05300	0.79	-0.7
1,116,096	+		ABZR87_RS05300	0.79	-0.2
1,116,097	-		ABZR87_RS05300	0.79	-0.9
1,116,097	-		ABZR87_RS05300	0.79	-1.2
1,116,099	+		ABZR87_RS05300	0.79	-0.2
1,116,099	+		ABZR87_RS05300	0.79	+0.7
1,116,099	+		ABZR87_RS05300	0.79	+0.4
1,116,099	+		ABZR87_RS05300	0.79	-1.0
1,116,100	-		ABZR87_RS05300	0.79	-0.3
1,116,100	-		ABZR87_RS05300	0.79	-0.2
1,116,100	-		ABZR87_RS05300	0.79	+0.0
1,116,100	-		ABZR87_RS05300	0.79	-1.8
1,116,347	+				-1.3
1,116,347	+				-3.0
1,116,347	+				-0.7
1,116,347	+				-3.6
1,116,347	+				+0.8
1,116,347	+				-1.2
1,116,347	+				-1.6
1,116,348	-				-2.6
1,116,348	-				-1.7
1,116,348	-				-3.3
1,116,363	+		ABZR87_RS05305	0.12	-3.2
1,116,363	+		ABZR87_RS05305	0.12	-1.4
1,116,364	-		ABZR87_RS05305	0.12	-1.7
1,116,364	-		ABZR87_RS05305	0.12	-2.5
1,116,416	+		ABZR87_RS05305	0.20	-2.3
1,116,416	+		ABZR87_RS05305	0.20	-2.1
1,116,416	+		ABZR87_RS05305	0.20	-2.8
1,116,416	+		ABZR87_RS05305	0.20	-2.3
1,116,417	-		ABZR87_RS05305	0.20	-1.0
1,116,417	-		ABZR87_RS05305	0.20	-1.6
1,116,417	-		ABZR87_RS05305	0.20	-2.9
1,116,425	+		ABZR87_RS05305	0.21	-2.8
1,116,425	+		ABZR87_RS05305	0.21	-2.2
1,116,425	+		ABZR87_RS05305	0.21	-3.5
1,116,425	+		ABZR87_RS05305	0.21	-0.3
1,116,425	+		ABZR87_RS05305	0.21	-2.7
1,116,426	-		ABZR87_RS05305	0.21	-1.8
1,116,426	-		ABZR87_RS05305	0.21	-1.9
1,116,426	-		ABZR87_RS05305	0.21	-2.5
1,116,426	-		ABZR87_RS05305	0.21	-3.1
1,116,426	-		ABZR87_RS05305	0.21	-0.0
1,116,426	-		ABZR87_RS05305	0.21	-1.0
1,116,426	-		ABZR87_RS05305	0.21	-1.7
1,116,795	+		ABZR87_RS05305	0.76	-2.8
1,116,809	+		ABZR87_RS05305	0.78	-3.0
1,116,809	+		ABZR87_RS05305	0.78	-1.2
1,116,809	+		ABZR87_RS05305	0.78	-2.1
1,116,809	+		ABZR87_RS05305	0.78	-3.6
1,116,809	+		ABZR87_RS05305	0.78	-1.7
1,116,810	-		ABZR87_RS05305	0.78	-2.7
1,116,810	-		ABZR87_RS05305	0.78	-1.6
1,116,810	-		ABZR87_RS05305	0.78	-1.0
1,116,810	-		ABZR87_RS05305	0.78	+0.4
1,116,810	-		ABZR87_RS05305	0.78	-2.0
1,116,810	-		ABZR87_RS05305	0.78	-2.1
1,116,810	-		ABZR87_RS05305	0.78	-3.0
1,116,810	-		ABZR87_RS05305	0.78	-2.6
1,116,810	-		ABZR87_RS05305	0.78	-3.4
1,116,810	-		ABZR87_RS05305	0.78	-0.9
1,116,810	-		ABZR87_RS05305	0.78	-2.2
1,116,810	-		ABZR87_RS05305	0.78	-3.4
1,116,810	-		ABZR87_RS05305	0.78	-2.5
1,116,810	-		ABZR87_RS05305	0.78	+0.6
1,116,881	+		ABZR87_RS05305	0.89	-0.7
1,116,881	+		ABZR87_RS05305	0.89	-0.8
1,116,881	+		ABZR87_RS05305	0.89	-2.5
1,116,881	+		ABZR87_RS05305	0.89	-2.9
1,116,881	+		ABZR87_RS05305	0.89	-3.1
1,116,881	+		ABZR87_RS05305	0.89	-3.2
1,116,882	-		ABZR87_RS05305	0.89	-1.0
1,116,882	-		ABZR87_RS05305	0.89	-2.6
1,116,882	-		ABZR87_RS05305	0.89	-2.9
1,116,882	-		ABZR87_RS05305	0.89	-1.8
1,116,882	-		ABZR87_RS05305	0.89	-1.8
1,116,882	-		ABZR87_RS05305	0.89	-3.7
1,116,915	+				-0.9
1,116,915	+				-1.4
1,116,915	+				-1.6
1,116,915	+				-0.2
1,116,916	-				-3.1
1,116,916	-				-2.3
1,116,916	-				-0.8
1,117,100	-				+1.3
1,117,134	+				-3.0
1,117,134	+				-2.2
1,117,134	+				-1.5
1,117,134	+				-1.9
1,117,135	-				+0.8
1,117,135	-				+1.8
1,117,135	-				+0.0
1,117,135	-				+0.2
1,117,135	-				+0.2
1,117,166	+				-0.6
1,117,186	+				-3.3
1,117,186	+				-2.7
1,117,186	+				+0.1
1,117,186	+				-2.5
1,117,186	+				-1.5
1,117,187	-				+1.2
1,117,187	-				+0.4
1,117,187	-				+0.1
1,117,187	-				+0.8
1,117,190	+				-1.1
1,117,190	+				-1.8
1,117,190	+				-3.3
1,117,190	+				+0.6
1,117,190	+				-1.6
1,117,190	+				-1.0
1,117,190	+				-3.3
1,117,190	+				-1.7
1,117,190	+				-0.1
1,117,190	+				-0.5
1,117,190	+				-0.9
1,117,190	+				-3.8
1,117,190	+				-0.5
1,117,190	+				-0.6
1,117,190	+				-2.2
1,117,190	+				-1.3
1,117,190	+				-2.2
1,117,191	-				+0.7
1,117,191	-				+0.2
1,117,191	-				-2.1
1,117,191	-				+0.3
1,117,191	-				+0.0
1,117,191	-				+0.5
1,117,191	-				+0.7
1,117,191	-				-1.0
1,117,191	-				-1.0
1,117,191	-				-0.1
1,117,191	-				+0.4
1,117,191	-				+0.3
1,117,191	-				+0.6
1,117,194	+				-3.7
1,117,194	+				-0.9
1,117,204	+				-2.7
1,117,204	+				-1.3
1,117,205	-				-0.5
1,117,205	-				+1.3
1,117,205	-				-0.2
1,117,205	-				+0.7
1,117,208	+				-2.7
1,117,208	+				-2.3
1,117,208	+				-2.4
1,117,208	+				-3.2
1,117,208	+				-3.1
1,117,208	+				-3.2
1,117,208	+				-1.0
1,117,208	+				-0.7
1,117,209	-				-1.4
1,117,209	-				-1.6
1,117,209	-				-1.6
1,117,209	-				-1.2
1,117,210	+				-2.0
1,117,210	+				-1.6
1,117,210	+				-0.8
1,117,210	+				-2.4
1,117,214	-				-1.5
1,117,244	+				-2.0
1,117,244	+				-1.2
1,117,245	-				+1.6
1,117,245	-				+0.6