Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04540 and ABZR87_RS04545 are separated by 9 nucleotides ABZR87_RS04545 and ABZR87_RS04550 are separated by 122 nucleotides ABZR87_RS04550 and ABZR87_RS04555 are separated by 76 nucleotides ABZR87_RS04555 and ABZR87_RS04560 are separated by 19 nucleotides
ABZR87_RS04540: ABZR87_RS04540 - response regulator transcription factor, at 950,690 to 951,337
_RS04540
ABZR87_RS04545: ABZR87_RS04545 - aquaporin, at 951,347 to 952,126
_RS04545
ABZR87_RS04550: ABZR87_RS04550 - MFS transporter, at 952,249 to 953,715
_RS04550
ABZR87_RS04555: ABZR87_RS04555 - helix-turn-helix transcriptional regulator, at 953,792 to 954,685
_RS04555
ABZR87_RS04560: ABZR87_RS04560 - hydrolase, at 954,705 to 955,304
_RS04560
Position (kb) 952
953
954 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 951.302 kb on + strand at 951.302 kb on + strand at 951.303 kb on - strand at 951.303 kb on - strand at 951.335 kb on + strand at 951.489 kb on + strand, within ABZR87_RS04545 at 951.489 kb on + strand, within ABZR87_RS04545 at 951.489 kb on + strand, within ABZR87_RS04545 at 951.490 kb on - strand, within ABZR87_RS04545 at 951.490 kb on - strand, within ABZR87_RS04545 at 951.490 kb on - strand, within ABZR87_RS04545 at 951.490 kb on - strand, within ABZR87_RS04545 at 951.490 kb on - strand, within ABZR87_RS04545 at 951.604 kb on + strand, within ABZR87_RS04545 at 951.605 kb on - strand, within ABZR87_RS04545 at 951.606 kb on + strand, within ABZR87_RS04545 at 951.606 kb on + strand, within ABZR87_RS04545 at 951.606 kb on + strand, within ABZR87_RS04545 at 951.606 kb on + strand, within ABZR87_RS04545 at 951.606 kb on + strand, within ABZR87_RS04545 at 951.606 kb on + strand, within ABZR87_RS04545 at 951.607 kb on - strand, within ABZR87_RS04545 at 951.814 kb on - strand, within ABZR87_RS04545 at 951.814 kb on - strand, within ABZR87_RS04545 at 951.814 kb on - strand, within ABZR87_RS04545 at 951.953 kb on + strand, within ABZR87_RS04545 at 952.246 kb on - strand at 952.246 kb on - strand at 952.246 kb on - strand at 952.412 kb on + strand, within ABZR87_RS04550 at 952.413 kb on - strand, within ABZR87_RS04550 at 952.413 kb on - strand, within ABZR87_RS04550 at 952.413 kb on - strand, within ABZR87_RS04550 at 952.413 kb on - strand, within ABZR87_RS04550 at 952.413 kb on - strand, within ABZR87_RS04550 at 952.464 kb on + strand, within ABZR87_RS04550 at 952.464 kb on + strand, within ABZR87_RS04550 at 952.497 kb on + strand, within ABZR87_RS04550 at 952.498 kb on - strand, within ABZR87_RS04550 at 952.498 kb on - strand, within ABZR87_RS04550 at 952.498 kb on - strand, within ABZR87_RS04550 at 952.498 kb on - strand, within ABZR87_RS04550 at 952.562 kb on + strand, within ABZR87_RS04550 at 952.678 kb on + strand, within ABZR87_RS04550 at 952.808 kb on + strand, within ABZR87_RS04550 at 952.808 kb on + strand, within ABZR87_RS04550 at 952.808 kb on + strand, within ABZR87_RS04550 at 952.808 kb on + strand, within ABZR87_RS04550 at 952.809 kb on - strand, within ABZR87_RS04550 at 952.809 kb on - strand, within ABZR87_RS04550 at 952.847 kb on + strand, within ABZR87_RS04550 at 952.847 kb on + strand, within ABZR87_RS04550 at 952.847 kb on + strand, within ABZR87_RS04550 at 952.848 kb on - strand, within ABZR87_RS04550 at 952.848 kb on - strand, within ABZR87_RS04550 at 952.848 kb on - strand, within ABZR87_RS04550 at 953.093 kb on - strand, within ABZR87_RS04550 at 953.236 kb on + strand, within ABZR87_RS04550 at 953.236 kb on + strand, within ABZR87_RS04550 at 953.236 kb on + strand, within ABZR87_RS04550 at 953.439 kb on + strand, within ABZR87_RS04550 at 953.506 kb on - strand, within ABZR87_RS04550 at 953.522 kb on + strand, within ABZR87_RS04550 at 953.522 kb on + strand, within ABZR87_RS04550 at 953.534 kb on + strand, within ABZR87_RS04550 at 953.534 kb on + strand, within ABZR87_RS04550 at 953.534 kb on + strand, within ABZR87_RS04550 at 953.535 kb on - strand, within ABZR87_RS04550 at 953.535 kb on - strand, within ABZR87_RS04550 at 953.748 kb on + strand at 953.748 kb on + strand at 953.748 kb on + strand at 953.748 kb on + strand at 953.748 kb on + strand at 953.748 kb on + strand at 953.749 kb on - strand at 953.749 kb on - strand at 953.749 kb on - strand at 953.749 kb on - strand at 953.777 kb on + strand at 953.778 kb on - strand at 953.778 kb on - strand at 953.778 kb on - strand at 953.783 kb on + strand at 953.788 kb on + strand at 953.788 kb on + strand at 953.788 kb on + strand at 953.788 kb on + strand at 953.789 kb on - strand at 953.789 kb on - strand at 953.830 kb on + strand at 953.830 kb on + strand at 953.830 kb on + strand at 953.830 kb on + strand at 953.831 kb on - strand at 953.831 kb on - strand at 953.831 kb on - strand at 953.831 kb on - strand at 953.831 kb on - strand at 953.831 kb on - strand at 953.834 kb on - strand at 954.016 kb on + strand, within ABZR87_RS04555 at 954.016 kb on + strand, within ABZR87_RS04555 at 954.016 kb on + strand, within ABZR87_RS04555 at 954.031 kb on + strand, within ABZR87_RS04555 at 954.032 kb on + strand, within ABZR87_RS04555 at 954.032 kb on + strand, within ABZR87_RS04555 at 954.032 kb on + strand, within ABZR87_RS04555 at 954.032 kb on + strand, within ABZR87_RS04555 at 954.032 kb on + strand, within ABZR87_RS04555 at 954.033 kb on - strand, within ABZR87_RS04555 at 954.033 kb on - strand, within ABZR87_RS04555 at 954.033 kb on - strand, within ABZR87_RS04555 at 954.033 kb on - strand, within ABZR87_RS04555 at 954.033 kb on - strand, within ABZR87_RS04555 at 954.269 kb on + strand, within ABZR87_RS04555 at 954.270 kb on - strand, within ABZR87_RS04555 at 954.270 kb on - strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.362 kb on + strand, within ABZR87_RS04555 at 954.363 kb on - strand, within ABZR87_RS04555 at 954.363 kb on - strand, within ABZR87_RS04555 at 954.363 kb on - strand, within ABZR87_RS04555 at 954.374 kb on + strand, within ABZR87_RS04555 at 954.375 kb on - strand, within ABZR87_RS04555 at 954.375 kb on - strand, within ABZR87_RS04555 at 954.375 kb on - strand, within ABZR87_RS04555 at 954.375 kb on - strand, within ABZR87_RS04555 at 954.523 kb on + strand, within ABZR87_RS04555 at 954.611 kb on + strand at 954.612 kb on - strand at 954.612 kb on - strand at 954.612 kb on - strand at 954.612 kb on - strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.659 kb on + strand at 954.660 kb on - strand at 954.660 kb on - strand at 954.660 kb on - strand at 954.660 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 951,302 + +0.6 951,302 + +1.8 951,303 - -0.1 951,303 - +0.2 951,335 + +0.2 951,489 + ABZR87_RS04545 0.18 -0.7 951,489 + ABZR87_RS04545 0.18 +0.7 951,489 + ABZR87_RS04545 0.18 -0.3 951,490 - ABZR87_RS04545 0.18 -1.4 951,490 - ABZR87_RS04545 0.18 -2.3 951,490 - ABZR87_RS04545 0.18 -0.3 951,490 - ABZR87_RS04545 0.18 +0.3 951,490 - ABZR87_RS04545 0.18 +0.6 951,604 + ABZR87_RS04545 0.33 +0.8 951,605 - ABZR87_RS04545 0.33 -0.3 951,606 + ABZR87_RS04545 0.33 +0.5 951,606 + ABZR87_RS04545 0.33 -0.1 951,606 + ABZR87_RS04545 0.33 +0.2 951,606 + ABZR87_RS04545 0.33 -0.5 951,606 + ABZR87_RS04545 0.33 +0.1 951,606 + ABZR87_RS04545 0.33 +0.7 951,607 - ABZR87_RS04545 0.33 -1.6 951,814 - ABZR87_RS04545 0.60 -2.2 951,814 - ABZR87_RS04545 0.60 +0.7 951,814 - ABZR87_RS04545 0.60 -1.6 951,953 + ABZR87_RS04545 0.78 -0.7 952,246 - +2.8 952,246 - +0.9 952,246 - +0.1 952,412 + ABZR87_RS04550 0.11 +0.3 952,413 - ABZR87_RS04550 0.11 +0.7 952,413 - ABZR87_RS04550 0.11 -0.5 952,413 - ABZR87_RS04550 0.11 -0.2 952,413 - ABZR87_RS04550 0.11 +0.3 952,413 - ABZR87_RS04550 0.11 -0.7 952,464 + ABZR87_RS04550 0.15 -0.4 952,464 + ABZR87_RS04550 0.15 -1.0 952,497 + ABZR87_RS04550 0.17 -0.0 952,498 - ABZR87_RS04550 0.17 +0.0 952,498 - ABZR87_RS04550 0.17 -1.4 952,498 - ABZR87_RS04550 0.17 +0.3 952,498 - ABZR87_RS04550 0.17 +1.1 952,562 + ABZR87_RS04550 0.21 -1.2 952,678 + ABZR87_RS04550 0.29 -0.1 952,808 + ABZR87_RS04550 0.38 -0.7 952,808 + ABZR87_RS04550 0.38 +1.0 952,808 + ABZR87_RS04550 0.38 -1.9 952,808 + ABZR87_RS04550 0.38 +0.7 952,809 - ABZR87_RS04550 0.38 +0.0 952,809 - ABZR87_RS04550 0.38 -0.1 952,847 + ABZR87_RS04550 0.41 -1.5 952,847 + ABZR87_RS04550 0.41 +1.0 952,847 + ABZR87_RS04550 0.41 +0.5 952,848 - ABZR87_RS04550 0.41 -0.6 952,848 - ABZR87_RS04550 0.41 +1.0 952,848 - ABZR87_RS04550 0.41 +1.3 953,093 - ABZR87_RS04550 0.58 -0.2 953,236 + ABZR87_RS04550 0.67 -1.0 953,236 + ABZR87_RS04550 0.67 +0.2 953,236 + ABZR87_RS04550 0.67 +0.5 953,439 + ABZR87_RS04550 0.81 -0.8 953,506 - ABZR87_RS04550 0.86 -0.1 953,522 + ABZR87_RS04550 0.87 +0.3 953,522 + ABZR87_RS04550 0.87 -0.4 953,534 + ABZR87_RS04550 0.88 -0.2 953,534 + ABZR87_RS04550 0.88 +1.5 953,534 + ABZR87_RS04550 0.88 +0.0 953,535 - ABZR87_RS04550 0.88 -0.1 953,535 - ABZR87_RS04550 0.88 -1.0 953,748 + -0.1 953,748 + +0.2 953,748 + -0.5 953,748 + -1.0 953,748 + -1.3 953,748 + -0.4 953,749 - -1.4 953,749 - +0.7 953,749 - -2.3 953,749 - +0.1 953,777 + +1.1 953,778 - -1.0 953,778 - -1.3 953,778 - +0.3 953,783 + -0.7 953,788 + +0.2 953,788 + -0.8 953,788 + -0.1 953,788 + +0.7 953,789 - +0.3 953,789 - +0.0 953,830 + -0.8 953,830 + -0.3 953,830 + -1.3 953,830 + -2.4 953,831 - +1.9 953,831 - -0.7 953,831 - -1.0 953,831 - -0.9 953,831 - -1.1 953,831 - -2.8 953,834 - +0.5 954,016 + ABZR87_RS04555 0.25 -1.0 954,016 + ABZR87_RS04555 0.25 -0.3 954,016 + ABZR87_RS04555 0.25 -1.1 954,031 + ABZR87_RS04555 0.27 +1.7 954,032 + ABZR87_RS04555 0.27 -1.6 954,032 + ABZR87_RS04555 0.27 +0.0 954,032 + ABZR87_RS04555 0.27 +0.4 954,032 + ABZR87_RS04555 0.27 +0.5 954,032 + ABZR87_RS04555 0.27 -1.6 954,033 - ABZR87_RS04555 0.27 +0.5 954,033 - ABZR87_RS04555 0.27 -0.9 954,033 - ABZR87_RS04555 0.27 -0.8 954,033 - ABZR87_RS04555 0.27 -1.0 954,033 - ABZR87_RS04555 0.27 +0.2 954,269 + ABZR87_RS04555 0.53 +0.5 954,270 - ABZR87_RS04555 0.53 -0.2 954,270 - ABZR87_RS04555 0.53 -1.1 954,362 + ABZR87_RS04555 0.64 -0.7 954,362 + ABZR87_RS04555 0.64 -1.0 954,362 + ABZR87_RS04555 0.64 -0.3 954,362 + ABZR87_RS04555 0.64 +0.6 954,362 + ABZR87_RS04555 0.64 -0.1 954,362 + ABZR87_RS04555 0.64 -0.2 954,362 + ABZR87_RS04555 0.64 -0.6 954,362 + ABZR87_RS04555 0.64 -1.4 954,362 + ABZR87_RS04555 0.64 -1.9 954,362 + ABZR87_RS04555 0.64 +0.6 954,362 + ABZR87_RS04555 0.64 +0.9 954,362 + ABZR87_RS04555 0.64 -0.2 954,362 + ABZR87_RS04555 0.64 +0.7 954,362 + ABZR87_RS04555 0.64 -0.6 954,362 + ABZR87_RS04555 0.64 -0.2 954,363 - ABZR87_RS04555 0.64 -1.1 954,363 - ABZR87_RS04555 0.64 +0.7 954,363 - ABZR87_RS04555 0.64 +0.2 954,374 + ABZR87_RS04555 0.65 -0.1 954,375 - ABZR87_RS04555 0.65 -0.3 954,375 - ABZR87_RS04555 0.65 -1.1 954,375 - ABZR87_RS04555 0.65 -0.2 954,375 - ABZR87_RS04555 0.65 +0.0 954,523 + ABZR87_RS04555 0.82 -1.2 954,611 + -1.0 954,612 - -1.2 954,612 - -2.6 954,612 - +0.5 954,612 - -1.5 954,659 + -0.5 954,659 + +0.7 954,659 + +0.1 954,659 + -1.1 954,659 + +0.6 954,659 + -1.8 954,660 - -0.2 954,660 - -0.2 954,660 - +0.5 954,660 - +0.7
Or see this region's nucleotide sequence