Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03960

Experiment: no_plant_rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03955 and ABZR87_RS03960 are separated by 9 nucleotidesABZR87_RS03960 and ABZR87_RS03965 are separated by 198 nucleotides ABZR87_RS03955: ABZR87_RS03955 - YbdK family carboxylate-amine ligase, at 824,150 to 825,283 _RS03955 ABZR87_RS03960: ABZR87_RS03960 - cation:proton antiporter, at 825,293 to 826,516 _RS03960 ABZR87_RS03965: ABZR87_RS03965 - branched-chain amino acid ABC transporter substrate-binding protein, at 826,715 to 827,860 _RS03965 Position (kb) 825 826 827Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 824.397 kb on + strand, within ABZR87_RS03955at 824.397 kb on + strand, within ABZR87_RS03955at 824.397 kb on + strand, within ABZR87_RS03955at 824.398 kb on - strand, within ABZR87_RS03955at 824.398 kb on - strand, within ABZR87_RS03955at 824.398 kb on - strand, within ABZR87_RS03955at 824.398 kb on - strand, within ABZR87_RS03955at 824.445 kb on + strand, within ABZR87_RS03955at 824.446 kb on - strand, within ABZR87_RS03955at 824.454 kb on + strand, within ABZR87_RS03955at 824.454 kb on + strand, within ABZR87_RS03955at 824.455 kb on - strand, within ABZR87_RS03955at 824.455 kb on - strand, within ABZR87_RS03955at 824.455 kb on - strand, within ABZR87_RS03955at 824.455 kb on - strand, within ABZR87_RS03955at 824.515 kb on + strand, within ABZR87_RS03955at 824.515 kb on + strand, within ABZR87_RS03955at 824.516 kb on - strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.517 kb on + strand, within ABZR87_RS03955at 824.518 kb on - strand, within ABZR87_RS03955at 824.518 kb on - strand, within ABZR87_RS03955at 824.518 kb on - strand, within ABZR87_RS03955at 824.613 kb on + strand, within ABZR87_RS03955at 824.613 kb on + strand, within ABZR87_RS03955at 824.613 kb on + strand, within ABZR87_RS03955at 824.613 kb on + strand, within ABZR87_RS03955at 824.613 kb on + strand, within ABZR87_RS03955at 824.614 kb on - strand, within ABZR87_RS03955at 824.614 kb on - strand, within ABZR87_RS03955at 824.664 kb on + strand, within ABZR87_RS03955at 824.664 kb on + strand, within ABZR87_RS03955at 824.664 kb on + strand, within ABZR87_RS03955at 824.811 kb on - strand, within ABZR87_RS03955at 824.814 kb on + strand, within ABZR87_RS03955at 824.814 kb on + strand, within ABZR87_RS03955at 824.815 kb on - strand, within ABZR87_RS03955at 824.838 kb on + strand, within ABZR87_RS03955at 824.838 kb on + strand, within ABZR87_RS03955at 824.839 kb on - strand, within ABZR87_RS03955at 824.839 kb on - strand, within ABZR87_RS03955at 824.839 kb on - strand, within ABZR87_RS03955at 824.910 kb on + strand, within ABZR87_RS03955at 824.917 kb on - strand, within ABZR87_RS03955at 824.917 kb on - strand, within ABZR87_RS03955at 824.917 kb on - strand, within ABZR87_RS03955at 824.917 kb on - strand, within ABZR87_RS03955at 824.931 kb on + strand, within ABZR87_RS03955at 824.931 kb on + strand, within ABZR87_RS03955at 824.931 kb on + strand, within ABZR87_RS03955at 824.931 kb on + strand, within ABZR87_RS03955at 824.931 kb on + strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.932 kb on - strand, within ABZR87_RS03955at 824.938 kb on - strand, within ABZR87_RS03955at 825.147 kb on + strand, within ABZR87_RS03955at 825.148 kb on - strand, within ABZR87_RS03955at 825.148 kb on - strand, within ABZR87_RS03955at 825.148 kb on - strand, within ABZR87_RS03955at 825.201 kb on + strandat 825.201 kb on + strandat 825.201 kb on + strandat 825.202 kb on - strandat 825.202 kb on - strandat 825.202 kb on - strandat 825.294 kb on + strandat 825.294 kb on + strandat 825.294 kb on + strandat 825.294 kb on + strandat 825.294 kb on + strandat 825.295 kb on - strandat 825.295 kb on - strandat 825.426 kb on + strand, within ABZR87_RS03960at 825.426 kb on + strand, within ABZR87_RS03960at 825.439 kb on + strand, within ABZR87_RS03960at 825.825 kb on + strand, within ABZR87_RS03960at 825.852 kb on + strand, within ABZR87_RS03960at 825.852 kb on + strand, within ABZR87_RS03960at 825.852 kb on + strand, within ABZR87_RS03960at 825.852 kb on + strand, within ABZR87_RS03960at 825.853 kb on - strand, within ABZR87_RS03960at 825.853 kb on - strand, within ABZR87_RS03960at 825.853 kb on - strand, within ABZR87_RS03960at 825.853 kb on - strand, within ABZR87_RS03960at 825.853 kb on - strand, within ABZR87_RS03960at 825.912 kb on + strand, within ABZR87_RS03960at 825.913 kb on - strand, within ABZR87_RS03960at 825.949 kb on - strand, within ABZR87_RS03960at 825.955 kb on + strand, within ABZR87_RS03960at 825.955 kb on + strand, within ABZR87_RS03960at 825.996 kb on + strand, within ABZR87_RS03960at 825.996 kb on + strand, within ABZR87_RS03960at 825.996 kb on + strand, within ABZR87_RS03960at 825.996 kb on + strand, within ABZR87_RS03960at 825.996 kb on + strand, within ABZR87_RS03960at 825.996 kb on + strand, within ABZR87_RS03960at 825.996 kb on + strand, within ABZR87_RS03960at 825.997 kb on - strand, within ABZR87_RS03960at 825.997 kb on - strand, within ABZR87_RS03960at 825.997 kb on - strand, within ABZR87_RS03960at 826.369 kb on - strand, within ABZR87_RS03960at 826.519 kb on + strandat 826.585 kb on - strandat 826.591 kb on + strandat 826.688 kb on - strandat 826.716 kb on + strandat 826.717 kb on - strandat 826.717 kb on - strandat 826.717 kb on - strandat 826.767 kb on + strandat 826.767 kb on + strandat 826.767 kb on + strandat 826.767 kb on + strandat 826.767 kb on + strandat 826.768 kb on - strandat 826.768 kb on - strandat 826.809 kb on + strandat 826.809 kb on + strandat 826.810 kb on - strandat 826.810 kb on - strandat 826.815 kb on + strandat 826.815 kb on + strandat 826.816 kb on - strandat 826.816 kb on - strandat 826.816 kb on - strandat 826.816 kb on - strandat 826.816 kb on - strandat 826.866 kb on + strand, within ABZR87_RS03965at 826.866 kb on + strand, within ABZR87_RS03965at 826.866 kb on + strand, within ABZR87_RS03965at 826.867 kb on - strand, within ABZR87_RS03965at 826.867 kb on - strand, within ABZR87_RS03965at 826.867 kb on - strand, within ABZR87_RS03965at 826.929 kb on + strand, within ABZR87_RS03965at 826.929 kb on + strand, within ABZR87_RS03965at 826.930 kb on - strand, within ABZR87_RS03965at 826.930 kb on - strand, within ABZR87_RS03965at 826.930 kb on - strand, within ABZR87_RS03965at 826.936 kb on - strand, within ABZR87_RS03965at 826.944 kb on + strand, within ABZR87_RS03965at 826.944 kb on + strand, within ABZR87_RS03965at 826.944 kb on + strand, within ABZR87_RS03965at 826.944 kb on + strand, within ABZR87_RS03965at 826.945 kb on - strand, within ABZR87_RS03965at 826.977 kb on + strand, within ABZR87_RS03965at 826.977 kb on + strand, within ABZR87_RS03965at 826.977 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.989 kb on + strand, within ABZR87_RS03965at 826.990 kb on - strand, within ABZR87_RS03965at 827.181 kb on + strand, within ABZR87_RS03965at 827.181 kb on + strand, within ABZR87_RS03965at 827.181 kb on + strand, within ABZR87_RS03965at 827.182 kb on - strand, within ABZR87_RS03965at 827.328 kb on + strand, within ABZR87_RS03965at 827.328 kb on + strand, within ABZR87_RS03965at 827.329 kb on - strand, within ABZR87_RS03965at 827.364 kb on + strand, within ABZR87_RS03965at 827.364 kb on + strand, within ABZR87_RS03965at 827.445 kb on + strand, within ABZR87_RS03965at 827.446 kb on - strand, within ABZR87_RS03965at 827.446 kb on - strand, within ABZR87_RS03965at 827.446 kb on - strand, within ABZR87_RS03965at 827.460 kb on + strand, within ABZR87_RS03965at 827.460 kb on + strand, within ABZR87_RS03965at 827.460 kb on + strand, within ABZR87_RS03965at 827.508 kb on + strand, within ABZR87_RS03965at 827.508 kb on + strand, within ABZR87_RS03965at 827.508 kb on + strand, within ABZR87_RS03965at 827.508 kb on + strand, within ABZR87_RS03965at 827.508 kb on + strand, within ABZR87_RS03965at 827.509 kb on - strand, within ABZR87_RS03965at 827.509 kb on - strand, within ABZR87_RS03965at 827.509 kb on - strand, within ABZR87_RS03965at 827.509 kb on - strand, within ABZR87_RS03965at 827.509 kb on - strand, within ABZR87_RS03965at 827.509 kb on - strand, within ABZR87_RS03965

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB
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824,397 + ABZR87_RS03955 0.22 +2.4
824,397 + ABZR87_RS03955 0.22 +1.6
824,397 + ABZR87_RS03955 0.22 +2.7
824,398 - ABZR87_RS03955 0.22 +2.9
824,398 - ABZR87_RS03955 0.22 +1.8
824,398 - ABZR87_RS03955 0.22 +1.7
824,398 - ABZR87_RS03955 0.22 +2.9
824,445 + ABZR87_RS03955 0.26 +3.5
824,446 - ABZR87_RS03955 0.26 +2.6
824,454 + ABZR87_RS03955 0.27 +0.9
824,454 + ABZR87_RS03955 0.27 +1.6
824,455 - ABZR87_RS03955 0.27 +2.9
824,455 - ABZR87_RS03955 0.27 +2.5
824,455 - ABZR87_RS03955 0.27 +2.8
824,455 - ABZR87_RS03955 0.27 +2.6
824,515 + ABZR87_RS03955 0.32 +0.5
824,515 + ABZR87_RS03955 0.32 +3.3
824,516 - ABZR87_RS03955 0.32 +3.0
824,517 + ABZR87_RS03955 0.32 +2.5
824,517 + ABZR87_RS03955 0.32 +3.1
824,517 + ABZR87_RS03955 0.32 +3.0
824,517 + ABZR87_RS03955 0.32 +2.5
824,517 + ABZR87_RS03955 0.32 +1.6
824,517 + ABZR87_RS03955 0.32 +3.1
824,517 + ABZR87_RS03955 0.32 +3.1
824,518 - ABZR87_RS03955 0.32 +2.4
824,518 - ABZR87_RS03955 0.32 +3.0
824,518 - ABZR87_RS03955 0.32 +2.7
824,613 + ABZR87_RS03955 0.41 +2.8
824,613 + ABZR87_RS03955 0.41 +3.9
824,613 + ABZR87_RS03955 0.41 +3.6
824,613 + ABZR87_RS03955 0.41 +2.1
824,613 + ABZR87_RS03955 0.41 +2.4
824,614 - ABZR87_RS03955 0.41 +2.9
824,614 - ABZR87_RS03955 0.41 +3.4
824,664 + ABZR87_RS03955 0.45 +4.0
824,664 + ABZR87_RS03955 0.45 +3.0
824,664 + ABZR87_RS03955 0.45 +3.1
824,811 - ABZR87_RS03955 0.58 +2.7
824,814 + ABZR87_RS03955 0.59 +2.6
824,814 + ABZR87_RS03955 0.59 +1.0
824,815 - ABZR87_RS03955 0.59 +3.2
824,838 + ABZR87_RS03955 0.61 -0.5
824,838 + ABZR87_RS03955 0.61 +2.3
824,839 - ABZR87_RS03955 0.61 +1.4
824,839 - ABZR87_RS03955 0.61 +3.4
824,839 - ABZR87_RS03955 0.61 +2.3
824,910 + ABZR87_RS03955 0.67 +2.7
824,917 - ABZR87_RS03955 0.68 +2.0
824,917 - ABZR87_RS03955 0.68 +2.8
824,917 - ABZR87_RS03955 0.68 +5.3
824,917 - ABZR87_RS03955 0.68 +3.1
824,931 + ABZR87_RS03955 0.69 +3.3
824,931 + ABZR87_RS03955 0.69 +1.9
824,931 + ABZR87_RS03955 0.69 +1.9
824,931 + ABZR87_RS03955 0.69 +2.4
824,931 + ABZR87_RS03955 0.69 +2.7
824,932 - ABZR87_RS03955 0.69 +2.6
824,932 - ABZR87_RS03955 0.69 +2.9
824,932 - ABZR87_RS03955 0.69 +4.8
824,932 - ABZR87_RS03955 0.69 +3.5
824,932 - ABZR87_RS03955 0.69 +3.6
824,932 - ABZR87_RS03955 0.69 +2.5
824,932 - ABZR87_RS03955 0.69 +2.5
824,938 - ABZR87_RS03955 0.69 +2.6
825,147 + ABZR87_RS03955 0.88 +3.5
825,148 - ABZR87_RS03955 0.88 +2.2
825,148 - ABZR87_RS03955 0.88 +3.3
825,148 - ABZR87_RS03955 0.88 +1.8
825,201 + +2.9
825,201 + +1.9
825,201 + +3.1
825,202 - +2.6
825,202 - +3.5
825,202 - +2.8
825,294 + +1.4
825,294 + +1.4
825,294 + +2.0
825,294 + -0.1
825,294 + +1.2
825,295 - +0.1
825,295 - -0.2
825,426 + ABZR87_RS03960 0.11 +2.5
825,426 + ABZR87_RS03960 0.11 +2.8
825,439 + ABZR87_RS03960 0.12 +3.1
825,825 + ABZR87_RS03960 0.43 +2.7
825,852 + ABZR87_RS03960 0.46 +3.1
825,852 + ABZR87_RS03960 0.46 +0.5
825,852 + ABZR87_RS03960 0.46 +3.9
825,852 + ABZR87_RS03960 0.46 +3.3
825,853 - ABZR87_RS03960 0.46 +3.1
825,853 - ABZR87_RS03960 0.46 +2.5
825,853 - ABZR87_RS03960 0.46 +2.6
825,853 - ABZR87_RS03960 0.46 +2.5
825,853 - ABZR87_RS03960 0.46 +2.5
825,912 + ABZR87_RS03960 0.51 +3.0
825,913 - ABZR87_RS03960 0.51 +3.2
825,949 - ABZR87_RS03960 0.54 +3.5
825,955 + ABZR87_RS03960 0.54 +3.2
825,955 + ABZR87_RS03960 0.54 +2.5
825,996 + ABZR87_RS03960 0.57 +2.8
825,996 + ABZR87_RS03960 0.57 +3.0
825,996 + ABZR87_RS03960 0.57 +3.3
825,996 + ABZR87_RS03960 0.57 +2.2
825,996 + ABZR87_RS03960 0.57 +2.5
825,996 + ABZR87_RS03960 0.57 +3.5
825,996 + ABZR87_RS03960 0.57 +2.6
825,997 - ABZR87_RS03960 0.58 +2.7
825,997 - ABZR87_RS03960 0.58 +2.9
825,997 - ABZR87_RS03960 0.58 +2.6
826,369 - ABZR87_RS03960 0.88 +3.3
826,519 + -1.1
826,585 - -0.1
826,591 + -1.0
826,688 - -0.5
826,716 + -0.1
826,717 - -0.1
826,717 - +0.5
826,717 - +0.5
826,767 + +0.8
826,767 + +0.5
826,767 + +0.6
826,767 + -0.4
826,767 + -1.2
826,768 - -0.1
826,768 - -0.9
826,809 + -0.5
826,809 + -0.1
826,810 - +0.6
826,810 - -0.5
826,815 + +0.5
826,815 + +1.1
826,816 - -0.1
826,816 - +0.8
826,816 - +1.2
826,816 - -0.3
826,816 - -0.3
826,866 + ABZR87_RS03965 0.13 -0.5
826,866 + ABZR87_RS03965 0.13 +0.0
826,866 + ABZR87_RS03965 0.13 -0.4
826,867 - ABZR87_RS03965 0.13 +0.0
826,867 - ABZR87_RS03965 0.13 +1.1
826,867 - ABZR87_RS03965 0.13 -0.1
826,929 + ABZR87_RS03965 0.19 +0.2
826,929 + ABZR87_RS03965 0.19 +0.1
826,930 - ABZR87_RS03965 0.19 -0.4
826,930 - ABZR87_RS03965 0.19 -1.7
826,930 - ABZR87_RS03965 0.19 +0.1
826,936 - ABZR87_RS03965 0.19 -0.2
826,944 + ABZR87_RS03965 0.20 +0.6
826,944 + ABZR87_RS03965 0.20 +0.6
826,944 + ABZR87_RS03965 0.20 +2.0
826,944 + ABZR87_RS03965 0.20 -0.6
826,945 - ABZR87_RS03965 0.20 +1.9
826,977 + ABZR87_RS03965 0.23 -0.1
826,977 + ABZR87_RS03965 0.23 -0.4
826,977 + ABZR87_RS03965 0.23 +1.1
826,989 + ABZR87_RS03965 0.24 +1.3
826,989 + ABZR87_RS03965 0.24 -0.0
826,989 + ABZR87_RS03965 0.24 -0.9
826,989 + ABZR87_RS03965 0.24 +0.1
826,989 + ABZR87_RS03965 0.24 +1.4
826,989 + ABZR87_RS03965 0.24 +1.5
826,989 + ABZR87_RS03965 0.24 -0.5
826,989 + ABZR87_RS03965 0.24 -0.5
826,989 + ABZR87_RS03965 0.24 +1.2
826,990 - ABZR87_RS03965 0.24 +0.5
827,181 + ABZR87_RS03965 0.41 +0.2
827,181 + ABZR87_RS03965 0.41 +0.8
827,181 + ABZR87_RS03965 0.41 -1.0
827,182 - ABZR87_RS03965 0.41 -0.6
827,328 + ABZR87_RS03965 0.53 +0.0
827,328 + ABZR87_RS03965 0.53 -0.3
827,329 - ABZR87_RS03965 0.54 +1.5
827,364 + ABZR87_RS03965 0.57 +0.7
827,364 + ABZR87_RS03965 0.57 +1.9
827,445 + ABZR87_RS03965 0.64 -0.4
827,446 - ABZR87_RS03965 0.64 +0.5
827,446 - ABZR87_RS03965 0.64 -0.4
827,446 - ABZR87_RS03965 0.64 +0.4
827,460 + ABZR87_RS03965 0.65 -0.5
827,460 + ABZR87_RS03965 0.65 -0.2
827,460 + ABZR87_RS03965 0.65 -0.2
827,508 + ABZR87_RS03965 0.69 +2.6
827,508 + ABZR87_RS03965 0.69 -1.4
827,508 + ABZR87_RS03965 0.69 +0.1
827,508 + ABZR87_RS03965 0.69 +2.1
827,508 + ABZR87_RS03965 0.69 +0.4
827,509 - ABZR87_RS03965 0.69 +1.2
827,509 - ABZR87_RS03965 0.69 -0.3
827,509 - ABZR87_RS03965 0.69 -0.3
827,509 - ABZR87_RS03965 0.69 -0.4
827,509 - ABZR87_RS03965 0.69 +0.3
827,509 - ABZR87_RS03965 0.69 -0.2

Or see this region's nucleotide sequence