Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03840 and ABZR87_RS03845 are separated by 646 nucleotides ABZR87_RS03845 and ABZR87_RS03850 are separated by 94 nucleotides ABZR87_RS03850 and ABZR87_RS03855 overlap by 4 nucleotides
ABZR87_RS03840: ABZR87_RS03840 - arsenate reductase (glutaredoxin), at 792,709 to 793,056
_RS03840
ABZR87_RS03845: ABZR87_RS03845 - M20/M25/M40 family metallo-hydrolase, at 793,703 to 794,977
_RS03845
ABZR87_RS03850: ABZR87_RS03850 - ureidoglycolate lyase, at 795,072 to 795,599
_RS03850
ABZR87_RS03855: ABZR87_RS03855 - allantoicase, at 795,596 to 796,606
_RS03855
Position (kb) 793
794
795 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 792.706 kb on + strand at 792.706 kb on + strand at 792.706 kb on + strand at 792.857 kb on + strand, within ABZR87_RS03840 at 792.857 kb on + strand, within ABZR87_RS03840 at 792.857 kb on + strand, within ABZR87_RS03840 at 792.953 kb on + strand, within ABZR87_RS03840 at 792.954 kb on - strand, within ABZR87_RS03840 at 792.954 kb on - strand, within ABZR87_RS03840 at 792.954 kb on - strand, within ABZR87_RS03840 at 792.954 kb on - strand, within ABZR87_RS03840 at 793.046 kb on + strand at 793.047 kb on - strand at 793.047 kb on - strand at 793.102 kb on + strand at 793.103 kb on - strand at 793.103 kb on - strand at 793.103 kb on - strand at 793.103 kb on - strand at 793.103 kb on - strand at 793.236 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.403 kb on + strand at 793.404 kb on - strand at 793.404 kb on - strand at 793.404 kb on - strand at 793.404 kb on - strand at 793.404 kb on - strand at 793.404 kb on - strand at 793.404 kb on - strand at 793.404 kb on - strand at 793.830 kb on + strand at 793.830 kb on + strand at 793.831 kb on - strand, within ABZR87_RS03845 at 793.831 kb on - strand, within ABZR87_RS03845 at 793.860 kb on + strand, within ABZR87_RS03845 at 793.860 kb on + strand, within ABZR87_RS03845 at 793.861 kb on - strand, within ABZR87_RS03845 at 793.878 kb on + strand, within ABZR87_RS03845 at 793.878 kb on + strand, within ABZR87_RS03845 at 793.878 kb on + strand, within ABZR87_RS03845 at 793.878 kb on + strand, within ABZR87_RS03845 at 793.878 kb on + strand, within ABZR87_RS03845 at 793.879 kb on - strand, within ABZR87_RS03845 at 793.879 kb on - strand, within ABZR87_RS03845 at 793.879 kb on - strand, within ABZR87_RS03845 at 794.233 kb on - strand, within ABZR87_RS03845 at 794.233 kb on - strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.238 kb on + strand, within ABZR87_RS03845 at 794.239 kb on - strand, within ABZR87_RS03845 at 794.239 kb on - strand, within ABZR87_RS03845 at 794.239 kb on - strand, within ABZR87_RS03845 at 794.239 kb on - strand, within ABZR87_RS03845 at 794.239 kb on - strand, within ABZR87_RS03845 at 794.239 kb on - strand, within ABZR87_RS03845 at 794.239 kb on - strand, within ABZR87_RS03845 at 794.239 kb on - strand, within ABZR87_RS03845 at 794.239 kb on - strand, within ABZR87_RS03845 at 794.239 kb on - strand, within ABZR87_RS03845 at 794.239 kb on - strand, within ABZR87_RS03845 at 794.239 kb on - strand, within ABZR87_RS03845 at 794.239 kb on - strand, within ABZR87_RS03845 at 794.254 kb on + strand, within ABZR87_RS03845 at 794.254 kb on + strand, within ABZR87_RS03845 at 794.255 kb on - strand, within ABZR87_RS03845 at 794.255 kb on - strand, within ABZR87_RS03845 at 794.255 kb on - strand, within ABZR87_RS03845 at 794.255 kb on - strand, within ABZR87_RS03845 at 794.370 kb on + strand, within ABZR87_RS03845 at 794.394 kb on + strand, within ABZR87_RS03845 at 794.394 kb on + strand, within ABZR87_RS03845 at 794.394 kb on + strand, within ABZR87_RS03845 at 794.395 kb on - strand, within ABZR87_RS03845 at 794.395 kb on - strand, within ABZR87_RS03845 at 794.395 kb on - strand, within ABZR87_RS03845 at 794.463 kb on + strand, within ABZR87_RS03845 at 794.463 kb on + strand, within ABZR87_RS03845 at 794.463 kb on + strand, within ABZR87_RS03845 at 794.463 kb on + strand, within ABZR87_RS03845 at 794.463 kb on + strand, within ABZR87_RS03845 at 794.464 kb on - strand, within ABZR87_RS03845 at 794.544 kb on + strand, within ABZR87_RS03845 at 794.544 kb on + strand, within ABZR87_RS03845 at 794.544 kb on + strand, within ABZR87_RS03845 at 794.544 kb on + strand, within ABZR87_RS03845 at 794.544 kb on + strand, within ABZR87_RS03845 at 794.544 kb on + strand, within ABZR87_RS03845 at 794.544 kb on + strand, within ABZR87_RS03845 at 794.544 kb on + strand, within ABZR87_RS03845 at 794.544 kb on + strand, within ABZR87_RS03845 at 794.544 kb on + strand, within ABZR87_RS03845 at 794.545 kb on - strand, within ABZR87_RS03845 at 794.545 kb on - strand, within ABZR87_RS03845 at 794.545 kb on - strand, within ABZR87_RS03845 at 794.545 kb on - strand, within ABZR87_RS03845 at 794.545 kb on - strand, within ABZR87_RS03845 at 794.545 kb on - strand, within ABZR87_RS03845 at 794.628 kb on + strand, within ABZR87_RS03845 at 795.073 kb on + strand at 795.073 kb on + strand at 795.073 kb on + strand at 795.073 kb on + strand at 795.073 kb on + strand at 795.074 kb on - strand at 795.074 kb on - strand at 795.074 kb on - strand at 795.074 kb on - strand at 795.074 kb on - strand at 795.074 kb on - strand at 795.226 kb on + strand, within ABZR87_RS03850 at 795.226 kb on + strand, within ABZR87_RS03850 at 795.226 kb on + strand, within ABZR87_RS03850 at 795.227 kb on - strand, within ABZR87_RS03850 at 795.310 kb on + strand, within ABZR87_RS03850 at 795.310 kb on + strand, within ABZR87_RS03850 at 795.310 kb on + strand, within ABZR87_RS03850 at 795.699 kb on + strand, within ABZR87_RS03855 at 795.699 kb on + strand, within ABZR87_RS03855 at 795.699 kb on + strand, within ABZR87_RS03855 at 795.699 kb on + strand, within ABZR87_RS03855 at 795.700 kb on - strand, within ABZR87_RS03855 at 795.700 kb on - strand, within ABZR87_RS03855 at 795.700 kb on - strand, within ABZR87_RS03855 at 795.700 kb on - strand, within ABZR87_RS03855 at 795.700 kb on - strand, within ABZR87_RS03855 at 795.700 kb on - strand, within ABZR87_RS03855 at 795.700 kb on - strand, within ABZR87_RS03855 at 795.700 kb on - strand, within ABZR87_RS03855 at 795.702 kb on + strand, within ABZR87_RS03855 at 795.702 kb on + strand, within ABZR87_RS03855 at 795.702 kb on + strand, within ABZR87_RS03855 at 795.702 kb on + strand, within ABZR87_RS03855 at 795.702 kb on + strand, within ABZR87_RS03855 at 795.703 kb on - strand, within ABZR87_RS03855 at 795.703 kb on - strand, within ABZR87_RS03855 at 795.703 kb on - strand, within ABZR87_RS03855
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 792,706 + -0.8 792,706 + +0.3 792,706 + +0.3 792,857 + ABZR87_RS03840 0.43 +0.4 792,857 + ABZR87_RS03840 0.43 +0.2 792,857 + ABZR87_RS03840 0.43 +0.4 792,953 + ABZR87_RS03840 0.70 -0.7 792,954 - ABZR87_RS03840 0.70 +0.0 792,954 - ABZR87_RS03840 0.70 +0.2 792,954 - ABZR87_RS03840 0.70 -0.4 792,954 - ABZR87_RS03840 0.70 -1.9 793,046 + -0.9 793,047 - +0.4 793,047 - -0.8 793,102 + -0.9 793,103 - -1.0 793,103 - -0.3 793,103 - -0.9 793,103 - -0.0 793,103 - -0.4 793,236 + -0.6 793,403 + -0.4 793,403 + +0.4 793,403 + -0.2 793,403 + -0.4 793,403 + -0.1 793,403 + +0.3 793,403 + -0.1 793,403 + -0.0 793,403 + +0.4 793,403 + -0.3 793,403 + +1.0 793,403 + -2.0 793,403 + +0.2 793,404 - -1.0 793,404 - -2.4 793,404 - -0.9 793,404 - -1.7 793,404 - -1.8 793,404 - +0.5 793,404 - -0.9 793,404 - +0.7 793,830 + +0.1 793,830 + +0.3 793,831 - ABZR87_RS03845 0.10 -0.1 793,831 - ABZR87_RS03845 0.10 +0.3 793,860 + ABZR87_RS03845 0.12 -0.4 793,860 + ABZR87_RS03845 0.12 -0.1 793,861 - ABZR87_RS03845 0.12 -2.7 793,878 + ABZR87_RS03845 0.14 +1.1 793,878 + ABZR87_RS03845 0.14 +3.5 793,878 + ABZR87_RS03845 0.14 +0.3 793,878 + ABZR87_RS03845 0.14 -2.4 793,878 + ABZR87_RS03845 0.14 -0.4 793,879 - ABZR87_RS03845 0.14 +0.0 793,879 - ABZR87_RS03845 0.14 +2.5 793,879 - ABZR87_RS03845 0.14 +0.7 794,233 - ABZR87_RS03845 0.42 -0.2 794,233 - ABZR87_RS03845 0.42 +0.5 794,238 + ABZR87_RS03845 0.42 -0.1 794,238 + ABZR87_RS03845 0.42 +0.4 794,238 + ABZR87_RS03845 0.42 +0.5 794,238 + ABZR87_RS03845 0.42 -0.1 794,238 + ABZR87_RS03845 0.42 -0.3 794,238 + ABZR87_RS03845 0.42 +2.5 794,238 + ABZR87_RS03845 0.42 +1.2 794,238 + ABZR87_RS03845 0.42 +0.6 794,238 + ABZR87_RS03845 0.42 -1.5 794,238 + ABZR87_RS03845 0.42 -2.4 794,238 + ABZR87_RS03845 0.42 -0.2 794,238 + ABZR87_RS03845 0.42 -1.4 794,238 + ABZR87_RS03845 0.42 -0.4 794,238 + ABZR87_RS03845 0.42 -0.9 794,238 + ABZR87_RS03845 0.42 +1.3 794,238 + ABZR87_RS03845 0.42 -1.3 794,238 + ABZR87_RS03845 0.42 +0.0 794,238 + ABZR87_RS03845 0.42 +0.2 794,238 + ABZR87_RS03845 0.42 -1.0 794,238 + ABZR87_RS03845 0.42 +0.7 794,238 + ABZR87_RS03845 0.42 -0.9 794,239 - ABZR87_RS03845 0.42 +0.1 794,239 - ABZR87_RS03845 0.42 +0.2 794,239 - ABZR87_RS03845 0.42 -0.8 794,239 - ABZR87_RS03845 0.42 +3.5 794,239 - ABZR87_RS03845 0.42 -0.4 794,239 - ABZR87_RS03845 0.42 -1.4 794,239 - ABZR87_RS03845 0.42 +0.2 794,239 - ABZR87_RS03845 0.42 +1.1 794,239 - ABZR87_RS03845 0.42 -1.0 794,239 - ABZR87_RS03845 0.42 -0.8 794,239 - ABZR87_RS03845 0.42 -0.5 794,239 - ABZR87_RS03845 0.42 +0.3 794,239 - ABZR87_RS03845 0.42 +0.1 794,254 + ABZR87_RS03845 0.43 +0.7 794,254 + ABZR87_RS03845 0.43 -0.2 794,255 - ABZR87_RS03845 0.43 -0.0 794,255 - ABZR87_RS03845 0.43 +0.7 794,255 - ABZR87_RS03845 0.43 +0.5 794,255 - ABZR87_RS03845 0.43 -0.2 794,370 + ABZR87_RS03845 0.52 -0.8 794,394 + ABZR87_RS03845 0.54 +0.4 794,394 + ABZR87_RS03845 0.54 -0.3 794,394 + ABZR87_RS03845 0.54 -0.1 794,395 - ABZR87_RS03845 0.54 +0.3 794,395 - ABZR87_RS03845 0.54 -0.1 794,395 - ABZR87_RS03845 0.54 -0.7 794,463 + ABZR87_RS03845 0.60 -0.1 794,463 + ABZR87_RS03845 0.60 -0.4 794,463 + ABZR87_RS03845 0.60 +0.8 794,463 + ABZR87_RS03845 0.60 +1.1 794,463 + ABZR87_RS03845 0.60 +1.9 794,464 - ABZR87_RS03845 0.60 -0.8 794,544 + ABZR87_RS03845 0.66 -0.4 794,544 + ABZR87_RS03845 0.66 +0.3 794,544 + ABZR87_RS03845 0.66 +0.3 794,544 + ABZR87_RS03845 0.66 +0.1 794,544 + ABZR87_RS03845 0.66 +0.0 794,544 + ABZR87_RS03845 0.66 +1.0 794,544 + ABZR87_RS03845 0.66 -0.3 794,544 + ABZR87_RS03845 0.66 +0.0 794,544 + ABZR87_RS03845 0.66 -1.3 794,544 + ABZR87_RS03845 0.66 -0.1 794,545 - ABZR87_RS03845 0.66 +0.4 794,545 - ABZR87_RS03845 0.66 -0.9 794,545 - ABZR87_RS03845 0.66 +0.3 794,545 - ABZR87_RS03845 0.66 -0.1 794,545 - ABZR87_RS03845 0.66 +0.9 794,545 - ABZR87_RS03845 0.66 +0.6 794,628 + ABZR87_RS03845 0.73 -1.6 795,073 + -1.5 795,073 + -0.6 795,073 + -0.7 795,073 + -2.2 795,073 + -0.7 795,074 - +1.0 795,074 - -0.1 795,074 - -0.9 795,074 - -0.7 795,074 - +0.4 795,074 - -0.5 795,226 + ABZR87_RS03850 0.29 -2.1 795,226 + ABZR87_RS03850 0.29 -1.2 795,226 + ABZR87_RS03850 0.29 -3.3 795,227 - ABZR87_RS03850 0.29 -0.5 795,310 + ABZR87_RS03850 0.45 -2.0 795,310 + ABZR87_RS03850 0.45 -2.9 795,310 + ABZR87_RS03850 0.45 -1.8 795,699 + ABZR87_RS03855 0.10 +0.5 795,699 + ABZR87_RS03855 0.10 -0.8 795,699 + ABZR87_RS03855 0.10 -0.0 795,699 + ABZR87_RS03855 0.10 -1.2 795,700 - ABZR87_RS03855 0.10 -0.1 795,700 - ABZR87_RS03855 0.10 -0.3 795,700 - ABZR87_RS03855 0.10 -0.5 795,700 - ABZR87_RS03855 0.10 -0.3 795,700 - ABZR87_RS03855 0.10 -0.7 795,700 - ABZR87_RS03855 0.10 +0.2 795,700 - ABZR87_RS03855 0.10 +0.7 795,700 - ABZR87_RS03855 0.10 -2.8 795,702 + ABZR87_RS03855 0.10 -1.8 795,702 + ABZR87_RS03855 0.10 +0.1 795,702 + ABZR87_RS03855 0.10 -0.8 795,702 + ABZR87_RS03855 0.10 -2.2 795,702 + ABZR87_RS03855 0.10 -0.6 795,703 - ABZR87_RS03855 0.11 +0.1 795,703 - ABZR87_RS03855 0.11 +0.5 795,703 - ABZR87_RS03855 0.11 -0.5
Or see this region's nucleotide sequence