Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03555 and ABZR87_RS03560 are separated by 17 nucleotides ABZR87_RS03560 and ABZR87_RS03565 are separated by 131 nucleotides ABZR87_RS03565 and ABZR87_RS03570 are separated by 103 nucleotides
ABZR87_RS03555: ABZR87_RS03555 - S1C family serine protease, at 747,099 to 748,025
_RS03555
ABZR87_RS03560: ABZR87_RS03560 - hypothetical protein, at 748,043 to 748,630
_RS03560
ABZR87_RS03565: ABZR87_RS03565 - TetR/AcrR family transcriptional regulator, at 748,762 to 749,370
_RS03565
ABZR87_RS03570: ABZR87_RS03570 - MFS transporter, at 749,474 to 750,940
_RS03570
Position (kb) 748
749 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 747.071 kb on + strand at 747.071 kb on + strand at 747.071 kb on + strand at 747.071 kb on + strand at 747.071 kb on + strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.072 kb on - strand at 747.074 kb on + strand at 747.074 kb on + strand at 747.074 kb on + strand at 747.074 kb on + strand at 747.074 kb on + strand at 747.074 kb on + strand at 747.075 kb on + strand at 747.075 kb on - strand at 747.075 kb on - strand at 747.075 kb on - strand at 747.075 kb on - strand at 747.134 kb on - strand at 747.151 kb on + strand at 747.206 kb on - strand, within ABZR87_RS03555 at 747.206 kb on - strand, within ABZR87_RS03555 at 747.262 kb on + strand, within ABZR87_RS03555 at 747.262 kb on + strand, within ABZR87_RS03555 at 747.262 kb on + strand, within ABZR87_RS03555 at 747.262 kb on + strand, within ABZR87_RS03555 at 747.262 kb on + strand, within ABZR87_RS03555 at 747.263 kb on - strand, within ABZR87_RS03555 at 747.263 kb on - strand, within ABZR87_RS03555 at 747.263 kb on - strand, within ABZR87_RS03555 at 747.263 kb on - strand, within ABZR87_RS03555 at 747.263 kb on - strand, within ABZR87_RS03555 at 747.263 kb on - strand, within ABZR87_RS03555 at 747.263 kb on - strand, within ABZR87_RS03555 at 747.263 kb on - strand, within ABZR87_RS03555 at 747.466 kb on + strand, within ABZR87_RS03555 at 747.466 kb on + strand, within ABZR87_RS03555 at 747.467 kb on - strand, within ABZR87_RS03555 at 747.494 kb on + strand, within ABZR87_RS03555 at 747.495 kb on - strand, within ABZR87_RS03555 at 747.661 kb on + strand, within ABZR87_RS03555 at 747.662 kb on - strand, within ABZR87_RS03555 at 747.715 kb on + strand, within ABZR87_RS03555 at 747.766 kb on + strand, within ABZR87_RS03555 at 747.766 kb on + strand, within ABZR87_RS03555 at 747.766 kb on + strand, within ABZR87_RS03555 at 747.766 kb on + strand, within ABZR87_RS03555 at 747.767 kb on - strand, within ABZR87_RS03555 at 747.767 kb on - strand, within ABZR87_RS03555 at 748.183 kb on - strand, within ABZR87_RS03560 at 748.183 kb on - strand, within ABZR87_RS03560 at 748.272 kb on + strand, within ABZR87_RS03560 at 748.272 kb on + strand, within ABZR87_RS03560 at 748.290 kb on + strand, within ABZR87_RS03560 at 748.290 kb on + strand, within ABZR87_RS03560 at 748.290 kb on + strand, within ABZR87_RS03560 at 748.291 kb on - strand, within ABZR87_RS03560 at 748.291 kb on - strand, within ABZR87_RS03560 at 748.291 kb on - strand, within ABZR87_RS03560 at 748.338 kb on + strand, within ABZR87_RS03560 at 748.338 kb on + strand, within ABZR87_RS03560 at 748.339 kb on - strand, within ABZR87_RS03560 at 748.339 kb on - strand, within ABZR87_RS03560 at 748.339 kb on - strand, within ABZR87_RS03560 at 748.339 kb on - strand, within ABZR87_RS03560 at 748.357 kb on + strand, within ABZR87_RS03560 at 748.357 kb on + strand, within ABZR87_RS03560 at 748.358 kb on - strand, within ABZR87_RS03560 at 748.358 kb on - strand, within ABZR87_RS03560 at 748.557 kb on + strand, within ABZR87_RS03560 at 748.557 kb on + strand, within ABZR87_RS03560 at 748.557 kb on + strand, within ABZR87_RS03560 at 748.558 kb on - strand, within ABZR87_RS03560 at 748.558 kb on - strand, within ABZR87_RS03560 at 748.558 kb on - strand, within ABZR87_RS03560 at 748.630 kb on + strand at 748.630 kb on + strand at 748.630 kb on + strand at 748.630 kb on + strand at 748.630 kb on + strand at 748.630 kb on + strand at 748.630 kb on + strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.686 kb on + strand at 748.686 kb on + strand at 748.687 kb on - strand at 748.687 kb on - strand at 748.687 kb on - strand at 748.935 kb on + strand, within ABZR87_RS03565 at 749.016 kb on - strand, within ABZR87_RS03565 at 749.021 kb on + strand, within ABZR87_RS03565 at 749.021 kb on + strand, within ABZR87_RS03565 at 749.021 kb on + strand, within ABZR87_RS03565 at 749.021 kb on + strand, within ABZR87_RS03565 at 749.021 kb on + strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.072 kb on + strand, within ABZR87_RS03565 at 749.072 kb on + strand, within ABZR87_RS03565 at 749.072 kb on + strand, within ABZR87_RS03565 at 749.072 kb on + strand, within ABZR87_RS03565 at 749.072 kb on + strand, within ABZR87_RS03565 at 749.073 kb on - strand, within ABZR87_RS03565 at 749.073 kb on - strand, within ABZR87_RS03565 at 749.073 kb on - strand, within ABZR87_RS03565 at 749.073 kb on - strand, within ABZR87_RS03565 at 749.157 kb on - strand, within ABZR87_RS03565 at 749.157 kb on - strand, within ABZR87_RS03565 at 749.224 kb on - strand, within ABZR87_RS03565 at 749.381 kb on + strand at 749.381 kb on + strand at 749.381 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 747,071 + +1.0 747,071 + +0.2 747,071 + +0.0 747,071 + -0.5 747,071 + +1.4 747,072 - -1.2 747,072 - -0.1 747,072 - +0.6 747,072 - -0.5 747,072 - -0.9 747,072 - +0.0 747,072 - -0.3 747,072 - -0.3 747,072 - -0.6 747,072 - +0.5 747,072 - -1.2 747,072 - +0.1 747,072 - +0.5 747,074 + +0.1 747,074 + +1.6 747,074 + -0.1 747,074 + -0.3 747,074 + +0.3 747,074 + -0.2 747,075 + -0.0 747,075 - -0.7 747,075 - -0.2 747,075 - -2.6 747,075 - +0.5 747,134 - +0.3 747,151 + +0.1 747,206 - ABZR87_RS03555 0.12 +0.2 747,206 - ABZR87_RS03555 0.12 +0.3 747,262 + ABZR87_RS03555 0.18 -0.4 747,262 + ABZR87_RS03555 0.18 -2.3 747,262 + ABZR87_RS03555 0.18 -2.1 747,262 + ABZR87_RS03555 0.18 -0.6 747,262 + ABZR87_RS03555 0.18 +0.2 747,263 - ABZR87_RS03555 0.18 +0.7 747,263 - ABZR87_RS03555 0.18 -1.3 747,263 - ABZR87_RS03555 0.18 +0.6 747,263 - ABZR87_RS03555 0.18 +0.1 747,263 - ABZR87_RS03555 0.18 -0.1 747,263 - ABZR87_RS03555 0.18 -0.3 747,263 - ABZR87_RS03555 0.18 +0.3 747,263 - ABZR87_RS03555 0.18 -0.6 747,466 + ABZR87_RS03555 0.40 +0.3 747,466 + ABZR87_RS03555 0.40 -0.5 747,467 - ABZR87_RS03555 0.40 +0.6 747,494 + ABZR87_RS03555 0.43 -0.6 747,495 - ABZR87_RS03555 0.43 -1.3 747,661 + ABZR87_RS03555 0.61 -0.5 747,662 - ABZR87_RS03555 0.61 +0.3 747,715 + ABZR87_RS03555 0.66 -2.2 747,766 + ABZR87_RS03555 0.72 -0.4 747,766 + ABZR87_RS03555 0.72 -0.4 747,766 + ABZR87_RS03555 0.72 +0.0 747,766 + ABZR87_RS03555 0.72 -0.4 747,767 - ABZR87_RS03555 0.72 -1.5 747,767 - ABZR87_RS03555 0.72 -0.4 748,183 - ABZR87_RS03560 0.24 -0.7 748,183 - ABZR87_RS03560 0.24 -0.2 748,272 + ABZR87_RS03560 0.39 -0.4 748,272 + ABZR87_RS03560 0.39 -0.0 748,290 + ABZR87_RS03560 0.42 -1.6 748,290 + ABZR87_RS03560 0.42 -0.8 748,290 + ABZR87_RS03560 0.42 -0.4 748,291 - ABZR87_RS03560 0.42 -0.1 748,291 - ABZR87_RS03560 0.42 -1.1 748,291 - ABZR87_RS03560 0.42 -0.9 748,338 + ABZR87_RS03560 0.50 -0.4 748,338 + ABZR87_RS03560 0.50 -0.4 748,339 - ABZR87_RS03560 0.50 -0.4 748,339 - ABZR87_RS03560 0.50 -0.3 748,339 - ABZR87_RS03560 0.50 -0.2 748,339 - ABZR87_RS03560 0.50 +0.1 748,357 + ABZR87_RS03560 0.53 -0.6 748,357 + ABZR87_RS03560 0.53 -0.7 748,358 - ABZR87_RS03560 0.54 -0.4 748,358 - ABZR87_RS03560 0.54 -0.6 748,557 + ABZR87_RS03560 0.87 +0.1 748,557 + ABZR87_RS03560 0.87 +0.8 748,557 + ABZR87_RS03560 0.87 -1.6 748,558 - ABZR87_RS03560 0.88 +0.3 748,558 - ABZR87_RS03560 0.88 +0.7 748,558 - ABZR87_RS03560 0.88 +0.9 748,630 + -0.1 748,630 + -0.0 748,630 + -2.1 748,630 + +0.9 748,630 + +0.6 748,630 + +0.7 748,630 + +0.4 748,631 - -0.5 748,631 - -0.7 748,631 - -0.1 748,631 - +1.6 748,631 - +0.5 748,631 - -1.6 748,631 - -1.0 748,686 + -0.9 748,686 + +0.4 748,687 - +0.6 748,687 - -1.8 748,687 - +0.2 748,935 + ABZR87_RS03565 0.28 -1.7 749,016 - ABZR87_RS03565 0.42 -1.7 749,021 + ABZR87_RS03565 0.43 -2.5 749,021 + ABZR87_RS03565 0.43 -3.4 749,021 + ABZR87_RS03565 0.43 -2.9 749,021 + ABZR87_RS03565 0.43 -1.4 749,021 + ABZR87_RS03565 0.43 -1.3 749,022 - ABZR87_RS03565 0.43 -1.5 749,022 - ABZR87_RS03565 0.43 -1.8 749,022 - ABZR87_RS03565 0.43 -2.7 749,022 - ABZR87_RS03565 0.43 -0.5 749,022 - ABZR87_RS03565 0.43 -4.5 749,022 - ABZR87_RS03565 0.43 -3.5 749,022 - ABZR87_RS03565 0.43 -1.5 749,022 - ABZR87_RS03565 0.43 -2.7 749,072 + ABZR87_RS03565 0.51 -3.8 749,072 + ABZR87_RS03565 0.51 -3.3 749,072 + ABZR87_RS03565 0.51 -0.3 749,072 + ABZR87_RS03565 0.51 -2.4 749,072 + ABZR87_RS03565 0.51 -2.5 749,073 - ABZR87_RS03565 0.51 -1.1 749,073 - ABZR87_RS03565 0.51 -3.3 749,073 - ABZR87_RS03565 0.51 -1.6 749,073 - ABZR87_RS03565 0.51 -1.6 749,157 - ABZR87_RS03565 0.65 +0.3 749,157 - ABZR87_RS03565 0.65 -3.0 749,224 - ABZR87_RS03565 0.76 -3.4 749,381 + -0.1 749,381 + +0.1 749,381 + -1.3
Or see this region's nucleotide sequence