Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03460 and ABZR87_RS03465 are separated by 575 nucleotides ABZR87_RS03465 and ABZR87_RS03470 are separated by 100 nucleotides
ABZR87_RS03460: ABZR87_RS03460 - type II secretion system inner membrane protein GspF, at 723,061 to 724,272
_RS03460
ABZR87_RS03465: ABZR87_RS03465 - pyridoxamine 5'-phosphate oxidase family protein, at 724,848 to 725,531
_RS03465
ABZR87_RS03470: ABZR87_RS03470 - PLP-dependent aminotransferase family protein, at 725,632 to 727,101
_RS03470
Position (kb) 724
725
726 Strain fitness (log2 ratio) -2
-1
0
1
2 at 723.860 kb on - strand, within ABZR87_RS03460 at 724.246 kb on - strand at 724.254 kb on + strand at 724.255 kb on - strand at 724.255 kb on - strand at 724.255 kb on - strand at 724.596 kb on + strand at 724.906 kb on + strand at 724.906 kb on + strand at 724.906 kb on + strand at 724.906 kb on + strand at 724.907 kb on - strand at 724.907 kb on - strand at 724.907 kb on - strand at 724.907 kb on - strand at 725.141 kb on + strand, within ABZR87_RS03465 at 725.142 kb on - strand, within ABZR87_RS03465 at 725.142 kb on - strand, within ABZR87_RS03465 at 725.142 kb on - strand, within ABZR87_RS03465 at 725.147 kb on + strand, within ABZR87_RS03465 at 725.148 kb on - strand, within ABZR87_RS03465 at 725.197 kb on + strand, within ABZR87_RS03465 at 725.197 kb on + strand, within ABZR87_RS03465 at 725.215 kb on + strand, within ABZR87_RS03465 at 725.215 kb on + strand, within ABZR87_RS03465 at 725.215 kb on + strand, within ABZR87_RS03465 at 725.216 kb on - strand, within ABZR87_RS03465 at 725.341 kb on + strand, within ABZR87_RS03465 at 725.341 kb on + strand, within ABZR87_RS03465 at 725.341 kb on + strand, within ABZR87_RS03465 at 725.341 kb on + strand, within ABZR87_RS03465 at 725.341 kb on + strand, within ABZR87_RS03465 at 725.341 kb on + strand, within ABZR87_RS03465 at 725.341 kb on + strand, within ABZR87_RS03465 at 725.341 kb on + strand, within ABZR87_RS03465 at 725.341 kb on + strand, within ABZR87_RS03465 at 725.341 kb on + strand, within ABZR87_RS03465 at 725.341 kb on + strand, within ABZR87_RS03465 at 725.341 kb on + strand, within ABZR87_RS03465 at 725.341 kb on + strand, within ABZR87_RS03465 at 725.342 kb on - strand, within ABZR87_RS03465 at 725.342 kb on - strand, within ABZR87_RS03465 at 725.342 kb on - strand, within ABZR87_RS03465 at 725.342 kb on - strand, within ABZR87_RS03465 at 725.342 kb on - strand, within ABZR87_RS03465 at 725.342 kb on - strand, within ABZR87_RS03465 at 725.342 kb on - strand, within ABZR87_RS03465 at 725.342 kb on - strand, within ABZR87_RS03465 at 725.422 kb on + strand, within ABZR87_RS03465 at 725.422 kb on + strand, within ABZR87_RS03465 at 725.422 kb on + strand, within ABZR87_RS03465 at 725.422 kb on + strand, within ABZR87_RS03465 at 725.422 kb on + strand, within ABZR87_RS03465 at 725.422 kb on + strand, within ABZR87_RS03465 at 725.422 kb on + strand, within ABZR87_RS03465 at 725.422 kb on + strand, within ABZR87_RS03465 at 725.422 kb on + strand, within ABZR87_RS03465 at 725.423 kb on - strand, within ABZR87_RS03465 at 725.423 kb on - strand, within ABZR87_RS03465 at 725.423 kb on - strand, within ABZR87_RS03465 at 725.423 kb on - strand, within ABZR87_RS03465 at 725.423 kb on - strand, within ABZR87_RS03465 at 725.461 kb on + strand, within ABZR87_RS03465 at 725.461 kb on + strand, within ABZR87_RS03465 at 725.461 kb on + strand, within ABZR87_RS03465 at 725.462 kb on - strand, within ABZR87_RS03465 at 725.462 kb on - strand, within ABZR87_RS03465 at 725.564 kb on + strand at 725.598 kb on + strand at 725.598 kb on + strand at 725.598 kb on + strand at 725.598 kb on + strand at 725.599 kb on - strand at 725.599 kb on - strand at 725.599 kb on - strand at 725.599 kb on - strand at 725.599 kb on - strand at 725.638 kb on + strand at 725.638 kb on + strand at 725.638 kb on + strand at 725.638 kb on + strand at 725.639 kb on - strand at 725.639 kb on - strand at 725.639 kb on - strand at 725.659 kb on + strand at 725.659 kb on + strand at 725.659 kb on + strand at 725.660 kb on - strand at 725.660 kb on - strand at 725.719 kb on + strand at 725.719 kb on + strand at 725.720 kb on - strand at 725.720 kb on - strand at 725.720 kb on - strand at 725.720 kb on - strand at 725.720 kb on - strand at 725.720 kb on - strand at 725.830 kb on + strand, within ABZR87_RS03470 at 725.831 kb on - strand, within ABZR87_RS03470 at 725.831 kb on - strand, within ABZR87_RS03470 at 725.836 kb on + strand, within ABZR87_RS03470 at 725.837 kb on - strand, within ABZR87_RS03470 at 726.154 kb on + strand, within ABZR87_RS03470 at 726.154 kb on + strand, within ABZR87_RS03470 at 726.155 kb on - strand, within ABZR87_RS03470 at 726.155 kb on - strand, within ABZR87_RS03470 at 726.155 kb on - strand, within ABZR87_RS03470 at 726.292 kb on + strand, within ABZR87_RS03470 at 726.292 kb on + strand, within ABZR87_RS03470 at 726.293 kb on - strand, within ABZR87_RS03470 at 726.293 kb on - strand, within ABZR87_RS03470 at 726.409 kb on + strand, within ABZR87_RS03470 at 726.409 kb on + strand, within ABZR87_RS03470 at 726.409 kb on + strand, within ABZR87_RS03470 at 726.409 kb on + strand, within ABZR87_RS03470 at 726.409 kb on + strand, within ABZR87_RS03470 at 726.409 kb on + strand, within ABZR87_RS03470 at 726.409 kb on + strand, within ABZR87_RS03470 at 726.409 kb on + strand, within ABZR87_RS03470 at 726.409 kb on + strand, within ABZR87_RS03470 at 726.410 kb on - strand, within ABZR87_RS03470 at 726.410 kb on - strand, within ABZR87_RS03470 at 726.410 kb on - strand, within ABZR87_RS03470 at 726.410 kb on - strand, within ABZR87_RS03470 at 726.410 kb on - strand, within ABZR87_RS03470 at 726.410 kb on - strand, within ABZR87_RS03470 at 726.410 kb on - strand, within ABZR87_RS03470 at 726.410 kb on - strand, within ABZR87_RS03470 at 726.431 kb on - strand, within ABZR87_RS03470 at 726.431 kb on - strand, within ABZR87_RS03470 at 726.520 kb on + strand, within ABZR87_RS03470 at 726.520 kb on + strand, within ABZR87_RS03470 at 726.520 kb on + strand, within ABZR87_RS03470 at 726.521 kb on - strand, within ABZR87_RS03470
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 723,860 - ABZR87_RS03460 0.66 -0.7 724,246 - -1.1 724,254 + -1.1 724,255 - -0.1 724,255 - -0.5 724,255 - +0.2 724,596 + +1.4 724,906 + -1.5 724,906 + -0.6 724,906 + +0.8 724,906 + +0.1 724,907 - -0.1 724,907 - -0.4 724,907 - +0.5 724,907 - -1.1 725,141 + ABZR87_RS03465 0.43 -0.8 725,142 - ABZR87_RS03465 0.43 -1.3 725,142 - ABZR87_RS03465 0.43 +0.1 725,142 - ABZR87_RS03465 0.43 -0.4 725,147 + ABZR87_RS03465 0.44 +0.1 725,148 - ABZR87_RS03465 0.44 -0.5 725,197 + ABZR87_RS03465 0.51 -0.3 725,197 + ABZR87_RS03465 0.51 -0.7 725,215 + ABZR87_RS03465 0.54 -0.9 725,215 + ABZR87_RS03465 0.54 -2.0 725,215 + ABZR87_RS03465 0.54 -0.0 725,216 - ABZR87_RS03465 0.54 -2.5 725,341 + ABZR87_RS03465 0.72 -0.8 725,341 + ABZR87_RS03465 0.72 -0.8 725,341 + ABZR87_RS03465 0.72 -0.5 725,341 + ABZR87_RS03465 0.72 +0.2 725,341 + ABZR87_RS03465 0.72 +0.2 725,341 + ABZR87_RS03465 0.72 -0.4 725,341 + ABZR87_RS03465 0.72 +0.1 725,341 + ABZR87_RS03465 0.72 +0.3 725,341 + ABZR87_RS03465 0.72 +0.8 725,341 + ABZR87_RS03465 0.72 -0.4 725,341 + ABZR87_RS03465 0.72 +1.0 725,341 + ABZR87_RS03465 0.72 +0.8 725,341 + ABZR87_RS03465 0.72 +1.3 725,342 - ABZR87_RS03465 0.72 +1.4 725,342 - ABZR87_RS03465 0.72 -0.1 725,342 - ABZR87_RS03465 0.72 +1.9 725,342 - ABZR87_RS03465 0.72 +0.1 725,342 - ABZR87_RS03465 0.72 -0.2 725,342 - ABZR87_RS03465 0.72 -0.0 725,342 - ABZR87_RS03465 0.72 -0.2 725,342 - ABZR87_RS03465 0.72 +0.2 725,422 + ABZR87_RS03465 0.84 +0.7 725,422 + ABZR87_RS03465 0.84 -0.3 725,422 + ABZR87_RS03465 0.84 -1.4 725,422 + ABZR87_RS03465 0.84 +0.4 725,422 + ABZR87_RS03465 0.84 -0.3 725,422 + ABZR87_RS03465 0.84 -0.1 725,422 + ABZR87_RS03465 0.84 -1.7 725,422 + ABZR87_RS03465 0.84 -0.0 725,422 + ABZR87_RS03465 0.84 -0.1 725,423 - ABZR87_RS03465 0.84 -0.1 725,423 - ABZR87_RS03465 0.84 +0.3 725,423 - ABZR87_RS03465 0.84 +1.2 725,423 - ABZR87_RS03465 0.84 -0.2 725,423 - ABZR87_RS03465 0.84 -0.0 725,461 + ABZR87_RS03465 0.90 +1.2 725,461 + ABZR87_RS03465 0.90 -0.6 725,461 + ABZR87_RS03465 0.90 -0.3 725,462 - ABZR87_RS03465 0.90 -0.4 725,462 - ABZR87_RS03465 0.90 +1.1 725,564 + +1.1 725,598 + +0.2 725,598 + -1.4 725,598 + +0.3 725,598 + -0.1 725,599 - +1.1 725,599 - -0.3 725,599 - +0.3 725,599 - +0.1 725,599 - -0.4 725,638 + +0.6 725,638 + +0.1 725,638 + -0.8 725,638 + -0.6 725,639 - -1.4 725,639 - -0.3 725,639 - -0.3 725,659 + -0.8 725,659 + -1.3 725,659 + -1.2 725,660 - +0.0 725,660 - +1.0 725,719 + -1.3 725,719 + +0.7 725,720 - +0.4 725,720 - -0.7 725,720 - -0.3 725,720 - -0.6 725,720 - +0.1 725,720 - -2.7 725,830 + ABZR87_RS03470 0.13 -0.8 725,831 - ABZR87_RS03470 0.14 -1.4 725,831 - ABZR87_RS03470 0.14 -0.5 725,836 + ABZR87_RS03470 0.14 +0.1 725,837 - ABZR87_RS03470 0.14 -0.6 726,154 + ABZR87_RS03470 0.36 -0.5 726,154 + ABZR87_RS03470 0.36 -0.2 726,155 - ABZR87_RS03470 0.36 +2.5 726,155 - ABZR87_RS03470 0.36 -0.2 726,155 - ABZR87_RS03470 0.36 -0.3 726,292 + ABZR87_RS03470 0.45 -0.4 726,292 + ABZR87_RS03470 0.45 -0.1 726,293 - ABZR87_RS03470 0.45 -0.3 726,293 - ABZR87_RS03470 0.45 +1.2 726,409 + ABZR87_RS03470 0.53 +1.0 726,409 + ABZR87_RS03470 0.53 -0.5 726,409 + ABZR87_RS03470 0.53 +0.9 726,409 + ABZR87_RS03470 0.53 +1.9 726,409 + ABZR87_RS03470 0.53 +0.1 726,409 + ABZR87_RS03470 0.53 -0.4 726,409 + ABZR87_RS03470 0.53 +0.0 726,409 + ABZR87_RS03470 0.53 +0.9 726,409 + ABZR87_RS03470 0.53 -0.4 726,410 - ABZR87_RS03470 0.53 +0.0 726,410 - ABZR87_RS03470 0.53 +0.5 726,410 - ABZR87_RS03470 0.53 -0.2 726,410 - ABZR87_RS03470 0.53 +0.4 726,410 - ABZR87_RS03470 0.53 +0.7 726,410 - ABZR87_RS03470 0.53 +1.4 726,410 - ABZR87_RS03470 0.53 +0.9 726,410 - ABZR87_RS03470 0.53 -0.9 726,431 - ABZR87_RS03470 0.54 +0.4 726,431 - ABZR87_RS03470 0.54 +0.6 726,520 + ABZR87_RS03470 0.60 -0.0 726,520 + ABZR87_RS03470 0.60 +0.2 726,520 + ABZR87_RS03470 0.60 +0.8 726,521 - ABZR87_RS03470 0.60 -0.4
Or see this region's nucleotide sequence