Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03405 and ABZR87_RS03410 are separated by 175 nucleotides ABZR87_RS03410 and ABZR87_RS03415 are separated by 32 nucleotides ABZR87_RS03415 and ABZR87_RS03420 overlap by 4 nucleotides ABZR87_RS03420 and ABZR87_RS03425 overlap by 20 nucleotides
ABZR87_RS03405: ABZR87_RS03405 - type II secretion system protein N, at 711,883 to 712,566
_RS03405
ABZR87_RS03410: ABZR87_RS03410 - type II secretion system major pseudopilin GspG, at 712,742 to 713,212
_RS03410
ABZR87_RS03415: ABZR87_RS03415 - GspH/FimT family pseudopilin, at 713,245 to 713,757
_RS03415
ABZR87_RS03420: ABZR87_RS03420 - type II secretion system minor pseudopilin GspI, at 713,754 to 714,164
_RS03420
ABZR87_RS03425: ABZR87_RS03425 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 714,145 to 714,888
_RS03425
Position (kb) 713
714 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 712.528 kb on + strand at 712.528 kb on + strand at 712.528 kb on + strand at 712.528 kb on + strand at 712.528 kb on + strand at 712.528 kb on + strand at 712.528 kb on + strand at 712.529 kb on - strand at 712.529 kb on - strand at 712.529 kb on - strand at 712.529 kb on - strand at 712.529 kb on - strand at 712.529 kb on - strand at 712.529 kb on - strand at 712.586 kb on + strand at 712.587 kb on - strand at 712.587 kb on - strand at 712.587 kb on - strand at 712.587 kb on - strand at 712.587 kb on - strand at 712.587 kb on - strand at 712.592 kb on + strand at 712.593 kb on - strand at 712.593 kb on - strand at 712.603 kb on + strand at 712.603 kb on + strand at 712.650 kb on + strand at 712.651 kb on - strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.693 kb on - strand at 712.693 kb on - strand at 712.693 kb on - strand at 712.693 kb on - strand at 712.693 kb on - strand at 712.693 kb on - strand at 712.693 kb on - strand at 712.703 kb on + strand at 712.703 kb on + strand at 712.703 kb on + strand at 712.703 kb on + strand at 712.703 kb on + strand at 712.703 kb on + strand at 712.703 kb on + strand at 712.703 kb on + strand at 712.703 kb on + strand at 712.704 kb on - strand at 712.704 kb on - strand at 712.704 kb on - strand at 712.704 kb on - strand at 712.704 kb on - strand at 712.704 kb on - strand at 712.704 kb on - strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.723 kb on + strand at 712.723 kb on + strand at 712.724 kb on - strand at 712.724 kb on - strand at 712.850 kb on - strand, within ABZR87_RS03410 at 712.955 kb on + strand, within ABZR87_RS03410 at 712.955 kb on + strand, within ABZR87_RS03410 at 712.956 kb on - strand, within ABZR87_RS03410 at 712.956 kb on - strand, within ABZR87_RS03410 at 712.956 kb on - strand, within ABZR87_RS03410 at 712.956 kb on - strand, within ABZR87_RS03410 at 713.061 kb on - strand, within ABZR87_RS03410 at 713.061 kb on - strand, within ABZR87_RS03410 at 713.061 kb on - strand, within ABZR87_RS03410 at 713.100 kb on - strand, within ABZR87_RS03410 at 713.100 kb on - strand, within ABZR87_RS03410 at 713.105 kb on + strand, within ABZR87_RS03410 at 713.105 kb on + strand, within ABZR87_RS03410 at 713.105 kb on + strand, within ABZR87_RS03410 at 713.106 kb on - strand, within ABZR87_RS03410 at 713.106 kb on - strand, within ABZR87_RS03410 at 713.106 kb on - strand, within ABZR87_RS03410 at 713.142 kb on + strand, within ABZR87_RS03410 at 713.210 kb on + strand at 713.210 kb on + strand at 713.210 kb on + strand at 713.210 kb on + strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.304 kb on + strand, within ABZR87_RS03415 at 713.304 kb on + strand, within ABZR87_RS03415 at 713.305 kb on - strand, within ABZR87_RS03415 at 713.305 kb on - strand, within ABZR87_RS03415 at 713.506 kb on + strand, within ABZR87_RS03415 at 713.506 kb on + strand, within ABZR87_RS03415 at 713.507 kb on - strand, within ABZR87_RS03415 at 713.507 kb on - strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.588 kb on + strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.589 kb on - strand, within ABZR87_RS03415 at 713.735 kb on + strand at 713.735 kb on + strand at 713.736 kb on - strand at 714.014 kb on + strand, within ABZR87_RS03420 at 714.162 kb on + strand at 714.162 kb on + strand at 714.162 kb on + strand at 714.162 kb on + strand at 714.162 kb on + strand at 714.162 kb on + strand at 714.163 kb on - strand at 714.163 kb on - strand at 714.163 kb on - strand at 714.334 kb on + strand, within ABZR87_RS03425 at 714.334 kb on + strand, within ABZR87_RS03425 at 714.334 kb on + strand, within ABZR87_RS03425 at 714.335 kb on - strand, within ABZR87_RS03425 at 714.335 kb on - strand, within ABZR87_RS03425 at 714.479 kb on - strand, within ABZR87_RS03425 at 714.479 kb on - strand, within ABZR87_RS03425 at 714.592 kb on + strand, within ABZR87_RS03425 at 714.592 kb on + strand, within ABZR87_RS03425 at 714.593 kb on - strand, within ABZR87_RS03425 at 714.658 kb on + strand, within ABZR87_RS03425 at 714.738 kb on + strand, within ABZR87_RS03425 at 714.738 kb on + strand, within ABZR87_RS03425 at 714.738 kb on + strand, within ABZR87_RS03425 at 714.738 kb on + strand, within ABZR87_RS03425 at 714.739 kb on - strand, within ABZR87_RS03425 at 714.739 kb on - strand, within ABZR87_RS03425
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 712,528 + -1.4 712,528 + -1.1 712,528 + -0.8 712,528 + -3.6 712,528 + -0.8 712,528 + -1.9 712,528 + -2.6 712,529 - -2.7 712,529 - -3.3 712,529 - +0.9 712,529 - -2.9 712,529 - -1.8 712,529 - +1.3 712,529 - -3.5 712,586 + -0.8 712,587 - -0.3 712,587 - -1.1 712,587 - -1.2 712,587 - -0.2 712,587 - +0.1 712,587 - -0.7 712,592 + -0.0 712,593 - +0.2 712,593 - -0.3 712,603 + +1.0 712,603 + +0.8 712,650 + -1.7 712,651 - +0.0 712,682 + -0.3 712,682 + -0.2 712,682 + -0.4 712,682 + +0.5 712,682 + -1.0 712,682 + +0.6 712,682 + +0.0 712,682 + +0.9 712,682 + -0.6 712,682 + -0.1 712,682 + -0.7 712,682 + -0.1 712,682 + -0.9 712,682 + -1.4 712,682 + +0.1 712,682 + +0.6 712,683 - -1.7 712,683 - -0.4 712,683 - +0.9 712,683 - -0.5 712,683 - -1.2 712,683 - +1.8 712,683 - -0.1 712,683 - +0.6 712,683 - -0.1 712,683 - +1.4 712,683 - +0.9 712,683 - +0.3 712,683 - -1.9 712,683 - -1.6 712,683 - +0.7 712,683 - +0.3 712,683 - -3.6 712,684 + -1.2 712,684 + -0.1 712,684 + +0.0 712,684 + +0.0 712,684 + +0.8 712,684 + -0.2 712,684 + +1.0 712,684 + -0.2 712,684 + -0.5 712,684 + +1.0 712,684 + +0.4 712,684 + -1.2 712,684 + -0.5 712,684 + +0.1 712,684 + +0.3 712,684 + -0.4 712,684 + -0.8 712,684 + -2.7 712,684 + +0.1 712,684 + +0.4 712,684 + -2.9 712,684 + -1.8 712,685 - +1.0 712,685 - -0.0 712,685 - -0.9 712,685 - +0.3 712,685 - -1.4 712,685 - -0.5 712,685 - -0.1 712,685 - -0.4 712,685 - -0.4 712,685 - +0.3 712,685 - -0.2 712,685 - +0.4 712,685 - -0.5 712,685 - -0.4 712,685 - -0.0 712,685 - -0.3 712,685 - -1.1 712,685 - -0.6 712,692 + -0.1 712,692 + +1.4 712,692 + -1.0 712,692 + -0.9 712,692 + +0.7 712,692 + +0.6 712,692 + -1.2 712,692 + -0.9 712,692 + +1.0 712,692 + +0.7 712,692 + +0.8 712,692 + -1.6 712,693 - -1.2 712,693 - +1.1 712,693 - +1.1 712,693 - -0.0 712,693 - -0.4 712,693 - +0.4 712,693 - -0.8 712,703 + +1.2 712,703 + -0.3 712,703 + +0.3 712,703 + -2.6 712,703 + +2.1 712,703 + -0.3 712,703 + +0.2 712,703 + +0.6 712,703 + -1.8 712,704 - +0.3 712,704 - -1.8 712,704 - +0.5 712,704 - -0.3 712,704 - -0.2 712,704 - +0.6 712,704 - +0.7 712,705 + -0.1 712,705 + +0.5 712,705 + -0.1 712,705 + -1.9 712,705 + -0.1 712,705 + -0.3 712,705 + +0.2 712,705 + -1.0 712,705 + +0.6 712,705 + -0.7 712,705 + -2.6 712,705 + -0.5 712,705 + +1.3 712,705 + -0.1 712,705 + +2.2 712,705 + -1.4 712,705 + -0.6 712,705 + +0.1 712,705 + +0.4 712,705 + -0.7 712,705 + -0.3 712,705 + -1.2 712,705 + -1.8 712,705 + +0.4 712,705 + -0.5 712,706 - -2.0 712,706 - +0.9 712,706 - -1.4 712,706 - +0.6 712,706 - -0.8 712,706 - -0.7 712,706 - -0.5 712,706 - -1.8 712,706 - -0.7 712,706 - -0.3 712,706 - -0.1 712,706 - -1.5 712,706 - -0.9 712,706 - -1.6 712,706 - -0.2 712,706 - -1.8 712,706 - -0.4 712,706 - +0.4 712,706 - -0.5 712,706 - -1.0 712,706 - -0.4 712,706 - +0.1 712,706 - -0.3 712,706 - -0.6 712,706 - -1.0 712,706 - -0.0 712,706 - -2.1 712,723 + +0.7 712,723 + +0.2 712,724 - -1.6 712,724 - -2.1 712,850 - ABZR87_RS03410 0.23 -0.5 712,955 + ABZR87_RS03410 0.45 -3.3 712,955 + ABZR87_RS03410 0.45 -2.7 712,956 - ABZR87_RS03410 0.45 -0.9 712,956 - ABZR87_RS03410 0.45 -1.3 712,956 - ABZR87_RS03410 0.45 -3.7 712,956 - ABZR87_RS03410 0.45 -0.6 713,061 - ABZR87_RS03410 0.68 -1.5 713,061 - ABZR87_RS03410 0.68 -4.4 713,061 - ABZR87_RS03410 0.68 -1.4 713,100 - ABZR87_RS03410 0.76 -2.1 713,100 - ABZR87_RS03410 0.76 -1.6 713,105 + ABZR87_RS03410 0.77 -1.9 713,105 + ABZR87_RS03410 0.77 -2.6 713,105 + ABZR87_RS03410 0.77 -2.6 713,106 - ABZR87_RS03410 0.77 -2.0 713,106 - ABZR87_RS03410 0.77 -2.9 713,106 - ABZR87_RS03410 0.77 -2.9 713,142 + ABZR87_RS03410 0.85 -3.3 713,210 + +0.1 713,210 + +1.3 713,210 + -1.0 713,210 + -3.0 713,211 - -0.4 713,211 - +0.1 713,211 - +0.6 713,211 - -1.6 713,211 - -0.3 713,211 - +0.3 713,211 - +0.5 713,304 + ABZR87_RS03415 0.12 -0.7 713,304 + ABZR87_RS03415 0.12 -2.0 713,305 - ABZR87_RS03415 0.12 -0.4 713,305 - ABZR87_RS03415 0.12 -0.5 713,506 + ABZR87_RS03415 0.51 -0.4 713,506 + ABZR87_RS03415 0.51 -0.2 713,507 - ABZR87_RS03415 0.51 -2.7 713,507 - ABZR87_RS03415 0.51 +0.2 713,588 + ABZR87_RS03415 0.67 -0.7 713,588 + ABZR87_RS03415 0.67 -0.8 713,588 + ABZR87_RS03415 0.67 -1.2 713,588 + ABZR87_RS03415 0.67 -1.6 713,588 + ABZR87_RS03415 0.67 -1.2 713,588 + ABZR87_RS03415 0.67 +1.3 713,588 + ABZR87_RS03415 0.67 -0.2 713,588 + ABZR87_RS03415 0.67 -1.1 713,588 + ABZR87_RS03415 0.67 -0.1 713,588 + ABZR87_RS03415 0.67 -0.0 713,588 + ABZR87_RS03415 0.67 -0.1 713,588 + ABZR87_RS03415 0.67 -0.5 713,588 + ABZR87_RS03415 0.67 -0.4 713,588 + ABZR87_RS03415 0.67 -0.7 713,588 + ABZR87_RS03415 0.67 -1.3 713,589 - ABZR87_RS03415 0.67 -1.2 713,589 - ABZR87_RS03415 0.67 -2.1 713,589 - ABZR87_RS03415 0.67 -1.3 713,589 - ABZR87_RS03415 0.67 -1.6 713,589 - ABZR87_RS03415 0.67 -1.6 713,589 - ABZR87_RS03415 0.67 -1.6 713,589 - ABZR87_RS03415 0.67 -0.2 713,589 - ABZR87_RS03415 0.67 -2.3 713,589 - ABZR87_RS03415 0.67 -0.1 713,589 - ABZR87_RS03415 0.67 -3.6 713,735 + -0.4 713,735 + -0.1 713,736 - -1.0 714,014 + ABZR87_RS03420 0.63 -0.3 714,162 + -2.0 714,162 + -1.2 714,162 + +0.1 714,162 + +1.6 714,162 + +0.4 714,162 + -0.3 714,163 - -3.0 714,163 - -0.8 714,163 - -2.4 714,334 + ABZR87_RS03425 0.25 -1.5 714,334 + ABZR87_RS03425 0.25 -2.8 714,334 + ABZR87_RS03425 0.25 -3.7 714,335 - ABZR87_RS03425 0.26 -2.3 714,335 - ABZR87_RS03425 0.26 -2.6 714,479 - ABZR87_RS03425 0.45 -3.5 714,479 - ABZR87_RS03425 0.45 -2.3 714,592 + ABZR87_RS03425 0.60 -1.4 714,592 + ABZR87_RS03425 0.60 -1.6 714,593 - ABZR87_RS03425 0.60 -1.9 714,658 + ABZR87_RS03425 0.69 -0.2 714,738 + ABZR87_RS03425 0.80 -2.1 714,738 + ABZR87_RS03425 0.80 -1.9 714,738 + ABZR87_RS03425 0.80 -1.8 714,738 + ABZR87_RS03425 0.80 -0.9 714,739 - ABZR87_RS03425 0.80 -0.8 714,739 - ABZR87_RS03425 0.80 -1.7
Or see this region's nucleotide sequence