Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03315 and ABZR87_RS03320 are separated by 24 nucleotides ABZR87_RS03320 and ABZR87_RS03325 are separated by 398 nucleotides
ABZR87_RS03315: ABZR87_RS03315 - glutathione-regulated potassium-efflux system protein KefC, at 699,107 to 701,047
_RS03315
ABZR87_RS03320: ABZR87_RS03320 - NAD(P)H-dependent oxidoreductase, at 701,072 to 701,623
_RS03320
ABZR87_RS03325: ABZR87_RS03325 - GNAT family N-acetyltransferase, at 702,022 to 702,717
_RS03325
Position (kb) 701
702 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 700.276 kb on - strand, within ABZR87_RS03315 at 700.504 kb on + strand, within ABZR87_RS03315 at 700.504 kb on + strand, within ABZR87_RS03315 at 700.504 kb on + strand, within ABZR87_RS03315 at 700.504 kb on + strand, within ABZR87_RS03315 at 700.504 kb on + strand, within ABZR87_RS03315 at 700.504 kb on + strand, within ABZR87_RS03315 at 700.504 kb on + strand, within ABZR87_RS03315 at 700.504 kb on + strand, within ABZR87_RS03315 at 700.504 kb on + strand, within ABZR87_RS03315 at 700.504 kb on + strand, within ABZR87_RS03315 at 700.504 kb on + strand, within ABZR87_RS03315 at 700.504 kb on + strand, within ABZR87_RS03315 at 700.505 kb on - strand, within ABZR87_RS03315 at 700.505 kb on - strand, within ABZR87_RS03315 at 700.505 kb on - strand, within ABZR87_RS03315 at 700.505 kb on - strand, within ABZR87_RS03315 at 700.505 kb on - strand, within ABZR87_RS03315 at 700.505 kb on - strand, within ABZR87_RS03315 at 700.780 kb on - strand, within ABZR87_RS03315 at 700.944 kb on + strand at 700.944 kb on + strand at 700.945 kb on - strand at 701.010 kb on + strand at 701.010 kb on + strand at 701.010 kb on + strand at 701.010 kb on + strand at 701.010 kb on + strand at 701.010 kb on + strand at 701.010 kb on + strand at 701.010 kb on + strand at 701.011 kb on - strand at 701.011 kb on - strand at 701.011 kb on - strand at 701.011 kb on - strand at 701.011 kb on - strand at 701.011 kb on - strand at 701.011 kb on - strand at 701.023 kb on + strand at 701.024 kb on - strand at 701.273 kb on - strand, within ABZR87_RS03320 at 701.274 kb on + strand, within ABZR87_RS03320 at 701.274 kb on + strand, within ABZR87_RS03320 at 701.274 kb on + strand, within ABZR87_RS03320 at 701.274 kb on + strand, within ABZR87_RS03320 at 701.275 kb on - strand, within ABZR87_RS03320 at 701.275 kb on - strand, within ABZR87_RS03320 at 701.275 kb on - strand, within ABZR87_RS03320 at 701.275 kb on - strand, within ABZR87_RS03320 at 701.275 kb on - strand, within ABZR87_RS03320 at 701.275 kb on - strand, within ABZR87_RS03320 at 701.409 kb on + strand, within ABZR87_RS03320 at 701.410 kb on - strand, within ABZR87_RS03320 at 701.496 kb on + strand, within ABZR87_RS03320 at 701.496 kb on + strand, within ABZR87_RS03320 at 701.497 kb on - strand, within ABZR87_RS03320 at 701.497 kb on - strand, within ABZR87_RS03320 at 701.497 kb on - strand, within ABZR87_RS03320 at 701.505 kb on + strand, within ABZR87_RS03320 at 701.505 kb on + strand, within ABZR87_RS03320 at 701.506 kb on - strand, within ABZR87_RS03320 at 701.506 kb on - strand, within ABZR87_RS03320 at 701.595 kb on + strand at 701.595 kb on + strand at 701.595 kb on + strand at 701.595 kb on + strand at 701.596 kb on - strand at 701.596 kb on - strand at 701.671 kb on + strand at 701.671 kb on + strand at 701.671 kb on + strand at 701.671 kb on + strand at 701.671 kb on + strand at 701.671 kb on + strand at 701.672 kb on - strand at 701.821 kb on + strand at 701.821 kb on + strand at 701.834 kb on + strand at 701.834 kb on + strand at 701.892 kb on + strand at 701.892 kb on + strand at 701.892 kb on + strand at 701.892 kb on + strand at 701.897 kb on + strand at 701.897 kb on + strand at 701.897 kb on + strand at 701.898 kb on - strand at 701.898 kb on - strand at 701.898 kb on - strand at 701.900 kb on + strand at 701.900 kb on + strand at 701.900 kb on + strand at 701.900 kb on + strand at 701.901 kb on - strand at 701.901 kb on - strand at 702.116 kb on + strand, within ABZR87_RS03325 at 702.116 kb on + strand, within ABZR87_RS03325 at 702.116 kb on + strand, within ABZR87_RS03325 at 702.116 kb on + strand, within ABZR87_RS03325 at 702.239 kb on - strand, within ABZR87_RS03325 at 702.239 kb on - strand, within ABZR87_RS03325 at 702.239 kb on - strand, within ABZR87_RS03325 at 702.239 kb on - strand, within ABZR87_RS03325 at 702.239 kb on - strand, within ABZR87_RS03325 at 702.239 kb on - strand, within ABZR87_RS03325 at 702.239 kb on - strand, within ABZR87_RS03325 at 702.283 kb on + strand, within ABZR87_RS03325 at 702.283 kb on + strand, within ABZR87_RS03325 at 702.284 kb on - strand, within ABZR87_RS03325 at 702.284 kb on - strand, within ABZR87_RS03325 at 702.284 kb on - strand, within ABZR87_RS03325 at 702.326 kb on - strand, within ABZR87_RS03325 at 702.326 kb on - strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.463 kb on + strand, within ABZR87_RS03325 at 702.464 kb on - strand, within ABZR87_RS03325 at 702.464 kb on - strand, within ABZR87_RS03325 at 702.464 kb on - strand, within ABZR87_RS03325 at 702.464 kb on - strand, within ABZR87_RS03325 at 702.464 kb on - strand, within ABZR87_RS03325 at 702.532 kb on + strand, within ABZR87_RS03325 at 702.533 kb on - strand, within ABZR87_RS03325 at 702.533 kb on - strand, within ABZR87_RS03325 at 702.533 kb on - strand, within ABZR87_RS03325 at 702.533 kb on - strand, within ABZR87_RS03325 at 702.533 kb on - strand, within ABZR87_RS03325 at 702.538 kb on + strand, within ABZR87_RS03325 at 702.556 kb on + strand, within ABZR87_RS03325 at 702.556 kb on + strand, within ABZR87_RS03325
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 700,276 - ABZR87_RS03315 0.60 -1.2 700,504 + ABZR87_RS03315 0.72 -1.1 700,504 + ABZR87_RS03315 0.72 +0.6 700,504 + ABZR87_RS03315 0.72 +0.1 700,504 + ABZR87_RS03315 0.72 -0.0 700,504 + ABZR87_RS03315 0.72 -0.4 700,504 + ABZR87_RS03315 0.72 +0.6 700,504 + ABZR87_RS03315 0.72 +0.8 700,504 + ABZR87_RS03315 0.72 +0.5 700,504 + ABZR87_RS03315 0.72 -0.0 700,504 + ABZR87_RS03315 0.72 -0.0 700,504 + ABZR87_RS03315 0.72 -1.6 700,504 + ABZR87_RS03315 0.72 -0.3 700,505 - ABZR87_RS03315 0.72 +5.4 700,505 - ABZR87_RS03315 0.72 -0.8 700,505 - ABZR87_RS03315 0.72 -0.5 700,505 - ABZR87_RS03315 0.72 +0.2 700,505 - ABZR87_RS03315 0.72 +1.1 700,505 - ABZR87_RS03315 0.72 -1.8 700,780 - ABZR87_RS03315 0.86 +0.2 700,944 + -0.1 700,944 + -0.6 700,945 - -0.9 701,010 + -0.3 701,010 + +0.9 701,010 + -0.2 701,010 + -0.5 701,010 + -2.8 701,010 + +0.1 701,010 + -0.6 701,010 + +0.6 701,011 - +0.8 701,011 - -0.4 701,011 - -0.6 701,011 - -0.9 701,011 - +0.5 701,011 - -0.1 701,011 - +0.7 701,023 + -0.8 701,024 - +0.8 701,273 - ABZR87_RS03320 0.36 +0.0 701,274 + ABZR87_RS03320 0.37 -0.2 701,274 + ABZR87_RS03320 0.37 +0.4 701,274 + ABZR87_RS03320 0.37 +0.2 701,274 + ABZR87_RS03320 0.37 -0.3 701,275 - ABZR87_RS03320 0.37 -0.6 701,275 - ABZR87_RS03320 0.37 -0.7 701,275 - ABZR87_RS03320 0.37 -0.4 701,275 - ABZR87_RS03320 0.37 -1.1 701,275 - ABZR87_RS03320 0.37 +0.2 701,275 - ABZR87_RS03320 0.37 -1.2 701,409 + ABZR87_RS03320 0.61 -1.8 701,410 - ABZR87_RS03320 0.61 -1.4 701,496 + ABZR87_RS03320 0.77 -1.7 701,496 + ABZR87_RS03320 0.77 +0.6 701,497 - ABZR87_RS03320 0.77 +0.5 701,497 - ABZR87_RS03320 0.77 +0.3 701,497 - ABZR87_RS03320 0.77 +0.2 701,505 + ABZR87_RS03320 0.78 -1.3 701,505 + ABZR87_RS03320 0.78 +0.4 701,506 - ABZR87_RS03320 0.79 +0.9 701,506 - ABZR87_RS03320 0.79 -1.4 701,595 + -1.5 701,595 + -0.2 701,595 + +0.2 701,595 + -0.1 701,596 - +0.3 701,596 - +0.7 701,671 + -0.4 701,671 + +0.7 701,671 + +0.3 701,671 + -1.2 701,671 + -0.9 701,671 + -0.3 701,672 - +0.8 701,821 + -0.5 701,821 + +0.7 701,834 + +0.3 701,834 + +0.5 701,892 + +0.7 701,892 + +0.0 701,892 + -1.8 701,892 + +0.0 701,897 + -0.1 701,897 + +4.6 701,897 + -0.6 701,898 - -2.8 701,898 - +0.7 701,898 - +0.4 701,900 + -0.7 701,900 + -0.0 701,900 + +0.8 701,900 + +0.1 701,901 - +0.6 701,901 - -1.0 702,116 + ABZR87_RS03325 0.14 +0.3 702,116 + ABZR87_RS03325 0.14 -0.1 702,116 + ABZR87_RS03325 0.14 -0.4 702,116 + ABZR87_RS03325 0.14 -0.5 702,239 - ABZR87_RS03325 0.31 -0.6 702,239 - ABZR87_RS03325 0.31 -0.4 702,239 - ABZR87_RS03325 0.31 -0.1 702,239 - ABZR87_RS03325 0.31 +1.0 702,239 - ABZR87_RS03325 0.31 -0.0 702,239 - ABZR87_RS03325 0.31 +3.0 702,239 - ABZR87_RS03325 0.31 -0.5 702,283 + ABZR87_RS03325 0.38 -0.7 702,283 + ABZR87_RS03325 0.38 +1.4 702,284 - ABZR87_RS03325 0.38 +0.3 702,284 - ABZR87_RS03325 0.38 -0.6 702,284 - ABZR87_RS03325 0.38 +0.9 702,326 - ABZR87_RS03325 0.44 +0.2 702,326 - ABZR87_RS03325 0.44 +0.3 702,463 + ABZR87_RS03325 0.63 -0.3 702,463 + ABZR87_RS03325 0.63 +1.2 702,463 + ABZR87_RS03325 0.63 -1.7 702,463 + ABZR87_RS03325 0.63 -0.4 702,463 + ABZR87_RS03325 0.63 +1.0 702,463 + ABZR87_RS03325 0.63 -0.7 702,463 + ABZR87_RS03325 0.63 +0.5 702,463 + ABZR87_RS03325 0.63 -0.5 702,464 - ABZR87_RS03325 0.64 -0.9 702,464 - ABZR87_RS03325 0.64 -1.5 702,464 - ABZR87_RS03325 0.64 +0.9 702,464 - ABZR87_RS03325 0.64 -0.6 702,464 - ABZR87_RS03325 0.64 +0.1 702,532 + ABZR87_RS03325 0.73 +0.2 702,533 - ABZR87_RS03325 0.73 -0.3 702,533 - ABZR87_RS03325 0.73 -2.1 702,533 - ABZR87_RS03325 0.73 -0.1 702,533 - ABZR87_RS03325 0.73 -0.7 702,533 - ABZR87_RS03325 0.73 -0.1 702,538 + ABZR87_RS03325 0.74 -0.3 702,556 + ABZR87_RS03325 0.77 +0.2 702,556 + ABZR87_RS03325 0.77 -0.6
Or see this region's nucleotide sequence