Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02880 and ABZR87_RS02885 are separated by 112 nucleotides ABZR87_RS02885 and ABZR87_RS02890 are separated by 20 nucleotides ABZR87_RS02890 and ABZR87_RS02895 are separated by 10 nucleotides
ABZR87_RS02880: ABZR87_RS02880 - DNA helicase RecQ, at 597,273 to 599,186
_RS02880
ABZR87_RS02885: ABZR87_RS02885 - class I SAM-dependent methyltransferase, at 599,299 to 599,889
_RS02885
ABZR87_RS02890: ABZR87_RS02890 - DUF2135 domain-containing protein, at 599,910 to 600,752
_RS02890
ABZR87_RS02895: ABZR87_RS02895 - YfaP family protein, at 600,763 to 601,554
_RS02895
Position (kb) 599
600 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 598.336 kb on + strand, within ABZR87_RS02880 at 598.337 kb on - strand, within ABZR87_RS02880 at 598.408 kb on + strand, within ABZR87_RS02880 at 598.408 kb on + strand, within ABZR87_RS02880 at 598.408 kb on + strand, within ABZR87_RS02880 at 598.409 kb on - strand, within ABZR87_RS02880 at 598.504 kb on + strand, within ABZR87_RS02880 at 598.504 kb on + strand, within ABZR87_RS02880 at 598.504 kb on + strand, within ABZR87_RS02880 at 598.505 kb on - strand, within ABZR87_RS02880 at 598.505 kb on - strand, within ABZR87_RS02880 at 598.663 kb on + strand, within ABZR87_RS02880 at 598.663 kb on + strand, within ABZR87_RS02880 at 598.664 kb on - strand, within ABZR87_RS02880 at 598.664 kb on - strand, within ABZR87_RS02880 at 598.664 kb on - strand, within ABZR87_RS02880 at 598.789 kb on + strand, within ABZR87_RS02880 at 598.790 kb on - strand, within ABZR87_RS02880 at 598.790 kb on - strand, within ABZR87_RS02880 at 598.990 kb on + strand, within ABZR87_RS02880 at 598.990 kb on + strand, within ABZR87_RS02880 at 598.991 kb on - strand, within ABZR87_RS02880 at 599.166 kb on + strand at 599.166 kb on + strand at 599.166 kb on + strand at 599.167 kb on - strand at 599.182 kb on + strand at 599.182 kb on + strand at 599.183 kb on - strand at 599.183 kb on - strand at 599.183 kb on - strand at 599.183 kb on - strand at 599.183 kb on - strand at 599.183 kb on - strand at 599.235 kb on + strand at 599.235 kb on + strand at 599.235 kb on + strand at 599.236 kb on - strand at 599.480 kb on + strand, within ABZR87_RS02885 at 599.480 kb on + strand, within ABZR87_RS02885 at 599.480 kb on + strand, within ABZR87_RS02885 at 599.481 kb on - strand, within ABZR87_RS02885 at 599.481 kb on - strand, within ABZR87_RS02885 at 599.481 kb on - strand, within ABZR87_RS02885 at 599.481 kb on - strand, within ABZR87_RS02885 at 599.648 kb on + strand, within ABZR87_RS02885 at 599.649 kb on - strand, within ABZR87_RS02885 at 599.690 kb on + strand, within ABZR87_RS02885 at 599.802 kb on - strand, within ABZR87_RS02885 at 599.802 kb on - strand, within ABZR87_RS02885 at 599.802 kb on - strand, within ABZR87_RS02885 at 599.802 kb on - strand, within ABZR87_RS02885 at 599.911 kb on + strand at 599.911 kb on + strand at 599.911 kb on + strand at 599.911 kb on + strand at 599.912 kb on - strand at 599.931 kb on + strand at 600.061 kb on + strand, within ABZR87_RS02890 at 600.062 kb on - strand, within ABZR87_RS02890 at 600.062 kb on - strand, within ABZR87_RS02890 at 600.064 kb on + strand, within ABZR87_RS02890 at 600.064 kb on + strand, within ABZR87_RS02890 at 600.064 kb on + strand, within ABZR87_RS02890 at 600.064 kb on + strand, within ABZR87_RS02890 at 600.064 kb on + strand, within ABZR87_RS02890 at 600.065 kb on - strand, within ABZR87_RS02890 at 600.065 kb on - strand, within ABZR87_RS02890 at 600.065 kb on - strand, within ABZR87_RS02890 at 600.065 kb on - strand, within ABZR87_RS02890 at 600.065 kb on - strand, within ABZR87_RS02890 at 600.065 kb on - strand, within ABZR87_RS02890 at 600.065 kb on - strand, within ABZR87_RS02890 at 600.065 kb on - strand, within ABZR87_RS02890 at 600.073 kb on + strand, within ABZR87_RS02890 at 600.073 kb on + strand, within ABZR87_RS02890 at 600.074 kb on - strand, within ABZR87_RS02890 at 600.074 kb on - strand, within ABZR87_RS02890 at 600.074 kb on - strand, within ABZR87_RS02890 at 600.074 kb on - strand, within ABZR87_RS02890 at 600.083 kb on - strand, within ABZR87_RS02890 at 600.083 kb on - strand, within ABZR87_RS02890 at 600.083 kb on - strand, within ABZR87_RS02890 at 600.083 kb on - strand, within ABZR87_RS02890 at 600.083 kb on - strand, within ABZR87_RS02890 at 600.083 kb on - strand, within ABZR87_RS02890 at 600.083 kb on - strand, within ABZR87_RS02890 at 600.112 kb on + strand, within ABZR87_RS02890 at 600.112 kb on + strand, within ABZR87_RS02890 at 600.112 kb on + strand, within ABZR87_RS02890 at 600.112 kb on + strand, within ABZR87_RS02890 at 600.112 kb on + strand, within ABZR87_RS02890 at 600.113 kb on - strand, within ABZR87_RS02890 at 600.113 kb on - strand, within ABZR87_RS02890 at 600.184 kb on + strand, within ABZR87_RS02890 at 600.185 kb on - strand, within ABZR87_RS02890 at 600.289 kb on + strand, within ABZR87_RS02890 at 600.289 kb on + strand, within ABZR87_RS02890 at 600.290 kb on - strand, within ABZR87_RS02890 at 600.290 kb on - strand, within ABZR87_RS02890 at 600.298 kb on + strand, within ABZR87_RS02890 at 600.298 kb on + strand, within ABZR87_RS02890 at 600.299 kb on - strand, within ABZR87_RS02890 at 600.299 kb on - strand, within ABZR87_RS02890 at 600.371 kb on - strand, within ABZR87_RS02890 at 600.371 kb on - strand, within ABZR87_RS02890 at 600.438 kb on - strand, within ABZR87_RS02890 at 600.583 kb on + strand, within ABZR87_RS02890 at 600.601 kb on + strand, within ABZR87_RS02890 at 600.855 kb on + strand, within ABZR87_RS02895 at 600.857 kb on + strand, within ABZR87_RS02895 at 600.858 kb on - strand, within ABZR87_RS02895 at 600.858 kb on - strand, within ABZR87_RS02895 at 600.858 kb on - strand, within ABZR87_RS02895 at 600.858 kb on - strand, within ABZR87_RS02895 at 600.858 kb on - strand, within ABZR87_RS02895
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 598,336 + ABZR87_RS02880 0.56 -0.3 598,337 - ABZR87_RS02880 0.56 +0.3 598,408 + ABZR87_RS02880 0.59 -0.1 598,408 + ABZR87_RS02880 0.59 -1.3 598,408 + ABZR87_RS02880 0.59 -0.2 598,409 - ABZR87_RS02880 0.59 -0.5 598,504 + ABZR87_RS02880 0.64 +1.0 598,504 + ABZR87_RS02880 0.64 +0.9 598,504 + ABZR87_RS02880 0.64 +0.1 598,505 - ABZR87_RS02880 0.64 +0.0 598,505 - ABZR87_RS02880 0.64 -0.4 598,663 + ABZR87_RS02880 0.73 +0.2 598,663 + ABZR87_RS02880 0.73 +0.3 598,664 - ABZR87_RS02880 0.73 +0.5 598,664 - ABZR87_RS02880 0.73 +1.1 598,664 - ABZR87_RS02880 0.73 -0.1 598,789 + ABZR87_RS02880 0.79 +0.2 598,790 - ABZR87_RS02880 0.79 +0.8 598,790 - ABZR87_RS02880 0.79 -0.3 598,990 + ABZR87_RS02880 0.90 -0.3 598,990 + ABZR87_RS02880 0.90 +0.4 598,991 - ABZR87_RS02880 0.90 -0.4 599,166 + -1.0 599,166 + +1.9 599,166 + +0.1 599,167 - +0.9 599,182 + -0.5 599,182 + -1.9 599,183 - +0.4 599,183 - +0.2 599,183 - -0.0 599,183 - +0.3 599,183 - -0.1 599,183 - +0.7 599,235 + -0.9 599,235 + +0.8 599,235 + -0.7 599,236 - -0.5 599,480 + ABZR87_RS02885 0.31 -0.8 599,480 + ABZR87_RS02885 0.31 +0.5 599,480 + ABZR87_RS02885 0.31 -3.1 599,481 - ABZR87_RS02885 0.31 -0.8 599,481 - ABZR87_RS02885 0.31 +1.2 599,481 - ABZR87_RS02885 0.31 +0.3 599,481 - ABZR87_RS02885 0.31 +0.3 599,648 + ABZR87_RS02885 0.59 +0.2 599,649 - ABZR87_RS02885 0.59 -0.5 599,690 + ABZR87_RS02885 0.66 -1.6 599,802 - ABZR87_RS02885 0.85 -0.3 599,802 - ABZR87_RS02885 0.85 +0.8 599,802 - ABZR87_RS02885 0.85 -2.5 599,802 - ABZR87_RS02885 0.85 +0.7 599,911 + -1.2 599,911 + -0.7 599,911 + +0.3 599,911 + -0.3 599,912 - +0.7 599,931 + +0.8 600,061 + ABZR87_RS02890 0.18 -0.1 600,062 - ABZR87_RS02890 0.18 +1.6 600,062 - ABZR87_RS02890 0.18 -0.3 600,064 + ABZR87_RS02890 0.18 -0.3 600,064 + ABZR87_RS02890 0.18 +0.9 600,064 + ABZR87_RS02890 0.18 -1.0 600,064 + ABZR87_RS02890 0.18 -0.0 600,064 + ABZR87_RS02890 0.18 +1.5 600,065 - ABZR87_RS02890 0.18 -1.7 600,065 - ABZR87_RS02890 0.18 -0.8 600,065 - ABZR87_RS02890 0.18 +0.4 600,065 - ABZR87_RS02890 0.18 +0.2 600,065 - ABZR87_RS02890 0.18 +1.1 600,065 - ABZR87_RS02890 0.18 +0.7 600,065 - ABZR87_RS02890 0.18 +0.2 600,065 - ABZR87_RS02890 0.18 +0.3 600,073 + ABZR87_RS02890 0.19 -0.5 600,073 + ABZR87_RS02890 0.19 -0.4 600,074 - ABZR87_RS02890 0.19 +0.4 600,074 - ABZR87_RS02890 0.19 -0.2 600,074 - ABZR87_RS02890 0.19 -0.6 600,074 - ABZR87_RS02890 0.19 +1.2 600,083 - ABZR87_RS02890 0.21 +0.2 600,083 - ABZR87_RS02890 0.21 +1.0 600,083 - ABZR87_RS02890 0.21 +0.2 600,083 - ABZR87_RS02890 0.21 +0.2 600,083 - ABZR87_RS02890 0.21 -0.2 600,083 - ABZR87_RS02890 0.21 +0.1 600,083 - ABZR87_RS02890 0.21 -1.0 600,112 + ABZR87_RS02890 0.24 +1.4 600,112 + ABZR87_RS02890 0.24 +1.2 600,112 + ABZR87_RS02890 0.24 +0.1 600,112 + ABZR87_RS02890 0.24 -0.8 600,112 + ABZR87_RS02890 0.24 +0.8 600,113 - ABZR87_RS02890 0.24 +0.6 600,113 - ABZR87_RS02890 0.24 +0.7 600,184 + ABZR87_RS02890 0.33 -1.0 600,185 - ABZR87_RS02890 0.33 +1.5 600,289 + ABZR87_RS02890 0.45 +0.5 600,289 + ABZR87_RS02890 0.45 -0.5 600,290 - ABZR87_RS02890 0.45 -0.6 600,290 - ABZR87_RS02890 0.45 -1.7 600,298 + ABZR87_RS02890 0.46 -0.9 600,298 + ABZR87_RS02890 0.46 -0.5 600,299 - ABZR87_RS02890 0.46 -0.4 600,299 - ABZR87_RS02890 0.46 +0.6 600,371 - ABZR87_RS02890 0.55 -0.5 600,371 - ABZR87_RS02890 0.55 +0.0 600,438 - ABZR87_RS02890 0.63 -0.5 600,583 + ABZR87_RS02890 0.80 -0.0 600,601 + ABZR87_RS02890 0.82 -1.3 600,855 + ABZR87_RS02895 0.12 +0.5 600,857 + ABZR87_RS02895 0.12 -1.3 600,858 - ABZR87_RS02895 0.12 -1.0 600,858 - ABZR87_RS02895 0.12 +0.1 600,858 - ABZR87_RS02895 0.12 +1.2 600,858 - ABZR87_RS02895 0.12 +1.1 600,858 - ABZR87_RS02895 0.12 -0.6
Or see this region's nucleotide sequence