Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02620 and ABZR87_RS02625 are separated by 452 nucleotides ABZR87_RS02625 and ABZR87_RS02630 are separated by 72 nucleotides ABZR87_RS02630 and ABZR87_RS02635 are separated by 138 nucleotides ABZR87_RS02635 and ABZR87_RS02640 are separated by 64 nucleotides
ABZR87_RS02620: ABZR87_RS02620 - type IV pilus biogenesis protein PilM, at 556,614 to 557,684
_RS02620
ABZR87_RS02625: ABZR87_RS02625 - penicillin-binding protein 1A, at 558,137 to 560,551
_RS02625
ABZR87_RS02630: ABZR87_RS02630 - iron donor protein CyaY, at 560,624 to 560,968
_RS02630
ABZR87_RS02635: ABZR87_RS02635 - lipoprotein, at 561,107 to 561,340
_RS02635
ABZR87_RS02640: ABZR87_RS02640 - diaminopimelate decarboxylase, at 561,405 to 562,664
_RS02640
Position (kb) 558
559
560
561 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 557.314 kb on + strand, within ABZR87_RS02620 at 557.314 kb on + strand, within ABZR87_RS02620 at 557.314 kb on + strand, within ABZR87_RS02620 at 557.314 kb on + strand, within ABZR87_RS02620 at 557.314 kb on + strand, within ABZR87_RS02620 at 557.315 kb on - strand, within ABZR87_RS02620 at 557.315 kb on - strand, within ABZR87_RS02620 at 557.315 kb on - strand, within ABZR87_RS02620 at 557.315 kb on - strand, within ABZR87_RS02620 at 557.315 kb on - strand, within ABZR87_RS02620 at 557.520 kb on - strand, within ABZR87_RS02620 at 557.645 kb on + strand at 557.645 kb on + strand at 557.649 kb on + strand at 557.650 kb on - strand at 557.650 kb on - strand at 557.660 kb on + strand at 557.717 kb on + strand at 557.717 kb on + strand at 557.718 kb on - strand at 557.764 kb on + strand at 557.764 kb on + strand at 557.773 kb on + strand at 557.773 kb on + strand at 557.773 kb on + strand at 557.773 kb on + strand at 557.774 kb on - strand at 557.774 kb on - strand at 557.805 kb on + strand at 557.925 kb on + strand at 557.925 kb on + strand at 557.926 kb on - strand at 557.926 kb on - strand at 557.926 kb on - strand at 557.932 kb on - strand at 557.982 kb on + strand at 557.983 kb on - strand at 557.983 kb on - strand at 557.983 kb on - strand at 558.045 kb on + strand at 558.045 kb on + strand at 558.045 kb on + strand at 558.045 kb on + strand at 558.045 kb on + strand at 558.045 kb on + strand at 558.046 kb on - strand at 558.046 kb on - strand at 558.046 kb on - strand at 558.046 kb on - strand at 558.055 kb on + strand at 558.055 kb on + strand at 558.055 kb on + strand at 558.055 kb on + strand at 558.056 kb on - strand at 558.056 kb on - strand at 558.056 kb on - strand at 558.056 kb on - strand at 558.056 kb on - strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.092 kb on + strand at 558.093 kb on - strand at 558.093 kb on - strand at 558.093 kb on - strand at 558.094 kb on + strand at 558.135 kb on + strand at 558.135 kb on + strand at 560.384 kb on + strand at 560.385 kb on - strand at 560.385 kb on - strand at 560.393 kb on + strand at 560.394 kb on - strand at 560.670 kb on + strand, within ABZR87_RS02630 at 560.688 kb on + strand, within ABZR87_RS02630 at 560.688 kb on + strand, within ABZR87_RS02630 at 560.688 kb on + strand, within ABZR87_RS02630 at 560.688 kb on + strand, within ABZR87_RS02630 at 560.688 kb on + strand, within ABZR87_RS02630 at 560.688 kb on + strand, within ABZR87_RS02630 at 560.688 kb on + strand, within ABZR87_RS02630 at 560.688 kb on + strand, within ABZR87_RS02630 at 560.688 kb on + strand, within ABZR87_RS02630 at 560.688 kb on + strand, within ABZR87_RS02630 at 560.688 kb on + strand, within ABZR87_RS02630 at 560.689 kb on - strand, within ABZR87_RS02630 at 560.689 kb on - strand, within ABZR87_RS02630 at 560.689 kb on - strand, within ABZR87_RS02630 at 560.689 kb on - strand, within ABZR87_RS02630 at 560.689 kb on - strand, within ABZR87_RS02630 at 560.689 kb on - strand, within ABZR87_RS02630 at 560.689 kb on - strand, within ABZR87_RS02630 at 560.689 kb on - strand, within ABZR87_RS02630 at 560.689 kb on - strand, within ABZR87_RS02630 at 560.689 kb on - strand, within ABZR87_RS02630 at 560.689 kb on - strand, within ABZR87_RS02630 at 560.689 kb on - strand, within ABZR87_RS02630 at 560.845 kb on + strand, within ABZR87_RS02630 at 560.845 kb on + strand, within ABZR87_RS02630 at 560.971 kb on + strand at 560.971 kb on + strand at 560.971 kb on + strand at 560.971 kb on + strand at 560.971 kb on + strand at 560.972 kb on - strand at 560.972 kb on - strand at 560.972 kb on - strand at 560.972 kb on - strand at 560.972 kb on - strand at 560.972 kb on - strand at 560.972 kb on - strand at 560.972 kb on - strand at 560.972 kb on - strand at 560.972 kb on - strand at 561.047 kb on + strand at 561.373 kb on + strand at 561.374 kb on - strand at 561.495 kb on + strand at 561.495 kb on + strand at 561.495 kb on + strand at 561.495 kb on + strand at 561.495 kb on + strand at 561.495 kb on + strand at 561.495 kb on + strand at 561.495 kb on + strand at 561.495 kb on + strand at 561.495 kb on + strand at 561.496 kb on - strand at 561.496 kb on - strand at 561.496 kb on - strand at 561.496 kb on - strand at 561.496 kb on - strand at 561.496 kb on - strand at 561.496 kb on - strand at 561.501 kb on + strand at 561.501 kb on + strand at 561.528 kb on + strand at 561.528 kb on + strand at 561.528 kb on + strand at 561.528 kb on + strand at 561.528 kb on + strand at 561.529 kb on - strand at 561.537 kb on + strand, within ABZR87_RS02640
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 557,314 + ABZR87_RS02620 0.65 +1.4 557,314 + ABZR87_RS02620 0.65 +1.2 557,314 + ABZR87_RS02620 0.65 +1.8 557,314 + ABZR87_RS02620 0.65 +1.9 557,314 + ABZR87_RS02620 0.65 +1.9 557,315 - ABZR87_RS02620 0.65 +0.6 557,315 - ABZR87_RS02620 0.65 +1.9 557,315 - ABZR87_RS02620 0.65 +1.2 557,315 - ABZR87_RS02620 0.65 +2.1 557,315 - ABZR87_RS02620 0.65 +1.7 557,520 - ABZR87_RS02620 0.85 +2.4 557,645 + +1.1 557,645 + +1.9 557,649 + -0.1 557,650 - +1.2 557,650 - -0.5 557,660 + +1.9 557,717 + +2.4 557,717 + +2.2 557,718 - -1.0 557,764 + +1.4 557,764 + +2.5 557,773 + +1.1 557,773 + +0.8 557,773 + +2.2 557,773 + +2.0 557,774 - +0.5 557,774 - +0.1 557,805 + +1.6 557,925 + +1.1 557,925 + +0.6 557,926 - +1.0 557,926 - -0.3 557,926 - -0.9 557,932 - +2.0 557,982 + -1.2 557,983 - -0.1 557,983 - -1.0 557,983 - +0.5 558,045 + -0.1 558,045 + +0.4 558,045 + +0.9 558,045 + +1.1 558,045 + +0.6 558,045 + +1.3 558,046 - -1.1 558,046 - -1.3 558,046 - -0.3 558,046 - -0.9 558,055 + +1.1 558,055 + +0.4 558,055 + -1.2 558,055 + -0.8 558,056 - -0.0 558,056 - -1.5 558,056 - -0.6 558,056 - +0.4 558,056 - -0.5 558,092 + -0.4 558,092 + +0.1 558,092 + -1.6 558,092 + +0.7 558,092 + +0.4 558,092 + +0.2 558,092 + +0.4 558,093 - -1.3 558,093 - -0.2 558,093 - +1.6 558,094 + -2.9 558,135 + -1.8 558,135 + +0.7 560,384 + +0.1 560,385 - -0.1 560,385 - -0.6 560,393 + -0.9 560,394 - -1.0 560,670 + ABZR87_RS02630 0.13 -0.5 560,688 + ABZR87_RS02630 0.19 +1.4 560,688 + ABZR87_RS02630 0.19 -1.1 560,688 + ABZR87_RS02630 0.19 -1.8 560,688 + ABZR87_RS02630 0.19 -1.0 560,688 + ABZR87_RS02630 0.19 -0.8 560,688 + ABZR87_RS02630 0.19 -0.4 560,688 + ABZR87_RS02630 0.19 -1.1 560,688 + ABZR87_RS02630 0.19 -0.4 560,688 + ABZR87_RS02630 0.19 +0.3 560,688 + ABZR87_RS02630 0.19 -0.7 560,688 + ABZR87_RS02630 0.19 +0.6 560,689 - ABZR87_RS02630 0.19 +0.6 560,689 - ABZR87_RS02630 0.19 -1.7 560,689 - ABZR87_RS02630 0.19 -1.4 560,689 - ABZR87_RS02630 0.19 -0.5 560,689 - ABZR87_RS02630 0.19 -1.0 560,689 - ABZR87_RS02630 0.19 -0.9 560,689 - ABZR87_RS02630 0.19 -1.8 560,689 - ABZR87_RS02630 0.19 -1.0 560,689 - ABZR87_RS02630 0.19 -1.7 560,689 - ABZR87_RS02630 0.19 -1.2 560,689 - ABZR87_RS02630 0.19 -1.7 560,689 - ABZR87_RS02630 0.19 -1.4 560,845 + ABZR87_RS02630 0.64 -0.1 560,845 + ABZR87_RS02630 0.64 -0.9 560,971 + -0.8 560,971 + -0.2 560,971 + +1.4 560,971 + +1.1 560,971 + +0.3 560,972 - +0.4 560,972 - +0.6 560,972 - -1.8 560,972 - -0.2 560,972 - +1.5 560,972 - -0.3 560,972 - -1.4 560,972 - +0.0 560,972 - +1.0 560,972 - -1.3 561,047 + +0.7 561,373 + -0.5 561,374 - -2.1 561,495 + -3.0 561,495 + -2.6 561,495 + -3.6 561,495 + -5.5 561,495 + -5.1 561,495 + -3.3 561,495 + -3.4 561,495 + -3.3 561,495 + -1.6 561,495 + -1.7 561,496 - -0.1 561,496 - -2.6 561,496 - -2.1 561,496 - -3.1 561,496 - -3.6 561,496 - -3.7 561,496 - -0.9 561,501 + -3.8 561,501 + -3.4 561,528 + -3.1 561,528 + -3.6 561,528 + -0.6 561,528 + -2.8 561,528 + -3.7 561,529 - -4.2 561,537 + ABZR87_RS02640 0.10 -1.8
Or see this region's nucleotide sequence