Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02035 and ABZR87_RS02040 are separated by 217 nucleotides ABZR87_RS02040 and ABZR87_RS02045 overlap by 4 nucleotides
ABZR87_RS02035: ABZR87_RS02035 - substrate-binding domain-containing protein, at 435,209 to 436,204
_RS02035
ABZR87_RS02040: ABZR87_RS02040 - phosphoenolpyruvate--protein phosphotransferase, at 436,422 to 438,971
_RS02040
ABZR87_RS02045: ABZR87_RS02045 - 1-phosphofructokinase, at 438,968 to 439,924
_RS02045
Position (kb) 436
437
438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 435.482 kb on - strand, within ABZR87_RS02035 at 435.571 kb on + strand, within ABZR87_RS02035 at 435.571 kb on + strand, within ABZR87_RS02035 at 435.572 kb on - strand, within ABZR87_RS02035 at 435.673 kb on + strand, within ABZR87_RS02035 at 435.885 kb on + strand, within ABZR87_RS02035 at 435.886 kb on - strand, within ABZR87_RS02035 at 435.886 kb on - strand, within ABZR87_RS02035 at 435.886 kb on - strand, within ABZR87_RS02035 at 436.236 kb on + strand at 436.237 kb on - strand at 436.237 kb on - strand at 436.288 kb on + strand at 436.300 kb on + strand at 436.301 kb on - strand at 436.301 kb on - strand at 436.344 kb on - strand at 436.542 kb on + strand at 436.542 kb on + strand at 436.542 kb on + strand at 436.542 kb on + strand at 436.543 kb on - strand at 436.714 kb on + strand, within ABZR87_RS02040 at 436.714 kb on + strand, within ABZR87_RS02040 at 436.715 kb on - strand, within ABZR87_RS02040 at 436.715 kb on - strand, within ABZR87_RS02040 at 436.715 kb on - strand, within ABZR87_RS02040 at 436.715 kb on - strand, within ABZR87_RS02040 at 436.715 kb on - strand, within ABZR87_RS02040 at 436.765 kb on + strand, within ABZR87_RS02040 at 436.765 kb on + strand, within ABZR87_RS02040 at 437.647 kb on + strand, within ABZR87_RS02040 at 437.825 kb on - strand, within ABZR87_RS02040 at 437.825 kb on - strand, within ABZR87_RS02040 at 437.825 kb on - strand, within ABZR87_RS02040 at 438.169 kb on - strand, within ABZR87_RS02040 at 438.169 kb on - strand, within ABZR87_RS02040 at 438.178 kb on - strand, within ABZR87_RS02040 at 438.178 kb on - strand, within ABZR87_RS02040 at 438.178 kb on - strand, within ABZR87_RS02040 at 438.606 kb on + strand, within ABZR87_RS02040 at 438.606 kb on + strand, within ABZR87_RS02040 at 438.606 kb on + strand, within ABZR87_RS02040 at 438.606 kb on + strand, within ABZR87_RS02040 at 438.606 kb on + strand, within ABZR87_RS02040 at 438.607 kb on - strand, within ABZR87_RS02040 at 438.799 kb on + strand at 438.799 kb on + strand at 438.799 kb on + strand at 438.800 kb on - strand at 438.800 kb on - strand at 439.421 kb on + strand, within ABZR87_RS02045 at 439.422 kb on - strand, within ABZR87_RS02045 at 439.422 kb on - strand, within ABZR87_RS02045 at 439.422 kb on - strand, within ABZR87_RS02045 at 439.422 kb on - strand, within ABZR87_RS02045 at 439.573 kb on + strand, within ABZR87_RS02045 at 439.573 kb on + strand, within ABZR87_RS02045 at 439.574 kb on - strand, within ABZR87_RS02045 at 439.574 kb on - strand, within ABZR87_RS02045 at 439.574 kb on - strand, within ABZR87_RS02045 at 439.574 kb on - strand, within ABZR87_RS02045 at 439.733 kb on - strand, within ABZR87_RS02045 at 439.733 kb on - strand, within ABZR87_RS02045
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 435,482 - ABZR87_RS02035 0.27 -1.1 435,571 + ABZR87_RS02035 0.36 +1.8 435,571 + ABZR87_RS02035 0.36 -2.0 435,572 - ABZR87_RS02035 0.36 +0.1 435,673 + ABZR87_RS02035 0.47 +0.5 435,885 + ABZR87_RS02035 0.68 -0.3 435,886 - ABZR87_RS02035 0.68 +0.3 435,886 - ABZR87_RS02035 0.68 -1.1 435,886 - ABZR87_RS02035 0.68 -0.6 436,236 + -0.6 436,237 - -0.1 436,237 - -0.4 436,288 + -3.3 436,300 + -0.5 436,301 - -1.7 436,301 - +0.3 436,344 - -0.0 436,542 + -0.2 436,542 + -0.1 436,542 + -1.0 436,542 + +1.0 436,543 - -0.9 436,714 + ABZR87_RS02040 0.11 +2.1 436,714 + ABZR87_RS02040 0.11 -1.6 436,715 - ABZR87_RS02040 0.11 -1.1 436,715 - ABZR87_RS02040 0.11 -0.3 436,715 - ABZR87_RS02040 0.11 -0.1 436,715 - ABZR87_RS02040 0.11 -1.1 436,715 - ABZR87_RS02040 0.11 -1.5 436,765 + ABZR87_RS02040 0.13 -1.0 436,765 + ABZR87_RS02040 0.13 -0.3 437,647 + ABZR87_RS02040 0.48 -0.9 437,825 - ABZR87_RS02040 0.55 -0.5 437,825 - ABZR87_RS02040 0.55 -0.3 437,825 - ABZR87_RS02040 0.55 +0.1 438,169 - ABZR87_RS02040 0.69 -1.7 438,169 - ABZR87_RS02040 0.69 +0.2 438,178 - ABZR87_RS02040 0.69 -0.5 438,178 - ABZR87_RS02040 0.69 +0.1 438,178 - ABZR87_RS02040 0.69 +1.0 438,606 + ABZR87_RS02040 0.86 -1.0 438,606 + ABZR87_RS02040 0.86 -2.5 438,606 + ABZR87_RS02040 0.86 -1.2 438,606 + ABZR87_RS02040 0.86 +0.3 438,606 + ABZR87_RS02040 0.86 +0.2 438,607 - ABZR87_RS02040 0.86 +0.4 438,799 + +1.2 438,799 + -0.4 438,799 + -0.1 438,800 - -0.7 438,800 - -0.9 439,421 + ABZR87_RS02045 0.47 +0.5 439,422 - ABZR87_RS02045 0.47 -0.5 439,422 - ABZR87_RS02045 0.47 -1.9 439,422 - ABZR87_RS02045 0.47 +0.5 439,422 - ABZR87_RS02045 0.47 -1.3 439,573 + ABZR87_RS02045 0.63 -0.8 439,573 + ABZR87_RS02045 0.63 -1.0 439,574 - ABZR87_RS02045 0.63 -2.2 439,574 - ABZR87_RS02045 0.63 +0.1 439,574 - ABZR87_RS02045 0.63 +0.3 439,574 - ABZR87_RS02045 0.63 -0.2 439,733 - ABZR87_RS02045 0.80 -1.6 439,733 - ABZR87_RS02045 0.80 -0.6
Or see this region's nucleotide sequence