Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01975 and ABZR87_RS01980 are separated by 28 nucleotides ABZR87_RS01980 and ABZR87_RS01985 are separated by 9 nucleotides ABZR87_RS01985 and ABZR87_RS01990 are separated by 380 nucleotides
ABZR87_RS01975: ABZR87_RS01975 - cell division protein FtsL, at 421,974 to 422,318
_RS01975
ABZR87_RS01980: ABZR87_RS01980 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 422,347 to 423,306
_RS01980
ABZR87_RS01985: ABZR87_RS01985 - division/cell wall cluster transcriptional repressor MraZ, at 423,316 to 423,744
_RS01985
ABZR87_RS01990: ABZR87_RS01990 - 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase, at 424,125 to 424,778
_RS01990
Position (kb) 423
424 Strain fitness (log2 ratio) -2
-1
0
1
2 at 422.663 kb on - strand, within ABZR87_RS01980 at 422.663 kb on - strand, within ABZR87_RS01980 at 422.663 kb on - strand, within ABZR87_RS01980 at 422.813 kb on - strand, within ABZR87_RS01980 at 422.813 kb on - strand, within ABZR87_RS01980 at 422.835 kb on - strand, within ABZR87_RS01980 at 423.216 kb on - strand at 423.216 kb on - strand at 423.216 kb on - strand at 423.384 kb on - strand, within ABZR87_RS01985 at 423.384 kb on - strand, within ABZR87_RS01985 at 423.819 kb on - strand at 423.859 kb on - strand at 423.932 kb on + strand at 423.932 kb on + strand at 423.986 kb on - strand at 423.986 kb on - strand at 423.986 kb on - strand at 424.000 kb on - strand at 424.000 kb on - strand at 424.000 kb on - strand at 424.000 kb on - strand at 424.135 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 422,663 - ABZR87_RS01980 0.33 +0.6 422,663 - ABZR87_RS01980 0.33 -1.0 422,663 - ABZR87_RS01980 0.33 -0.6 422,813 - ABZR87_RS01980 0.49 +0.3 422,813 - ABZR87_RS01980 0.49 +0.6 422,835 - ABZR87_RS01980 0.51 -0.2 423,216 - +1.4 423,216 - +1.8 423,216 - +1.1 423,384 - ABZR87_RS01985 0.16 +0.3 423,384 - ABZR87_RS01985 0.16 +0.5 423,819 - -1.0 423,859 - -0.2 423,932 + -1.0 423,932 + -0.8 423,986 - -1.0 423,986 - -2.1 423,986 - -0.5 424,000 - -0.7 424,000 - -1.0 424,000 - +0.9 424,000 - +0.8 424,135 + -2.0
Or see this region's nucleotide sequence