Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01770 and ABZR87_RS01775 are separated by 68 nucleotides ABZR87_RS01775 and ABZR87_RS01780 are separated by 65 nucleotides ABZR87_RS01780 and ABZR87_RS01785 are separated by 12 nucleotides
ABZR87_RS01770: ABZR87_RS01770 - signal recognition particle protein, at 377,136 to 378,551
_RS01770
ABZR87_RS01775: ABZR87_RS01775 - hypoxanthine-guanine phosphoribosyltransferase, at 378,620 to 379,168
_RS01775
ABZR87_RS01780: ABZR87_RS01780 - MarC family protein, at 379,234 to 379,827
_RS01780
ABZR87_RS01785: ABZR87_RS01785 - 2OG-Fe(II) oxygenase, at 379,840 to 380,706
_RS01785
Position (kb) 378
379
380 Strain fitness (log2 ratio) -2
-1
0
1
2 at 378.830 kb on + strand, within ABZR87_RS01775 at 378.830 kb on + strand, within ABZR87_RS01775 at 378.831 kb on - strand, within ABZR87_RS01775 at 378.831 kb on - strand, within ABZR87_RS01775 at 378.831 kb on - strand, within ABZR87_RS01775 at 378.916 kb on + strand, within ABZR87_RS01775 at 378.917 kb on - strand, within ABZR87_RS01775 at 379.008 kb on - strand, within ABZR87_RS01775 at 379.055 kb on + strand, within ABZR87_RS01775 at 379.091 kb on + strand, within ABZR87_RS01775 at 379.091 kb on + strand, within ABZR87_RS01775 at 379.091 kb on + strand, within ABZR87_RS01775 at 379.092 kb on - strand, within ABZR87_RS01775 at 379.124 kb on + strand at 379.125 kb on - strand at 379.125 kb on - strand at 379.405 kb on + strand, within ABZR87_RS01780 at 379.405 kb on + strand, within ABZR87_RS01780 at 379.821 kb on - strand at 379.821 kb on - strand at 379.856 kb on + strand at 379.857 kb on - strand at 379.857 kb on - strand at 379.961 kb on + strand, within ABZR87_RS01785 at 379.962 kb on - strand, within ABZR87_RS01785 at 379.962 kb on - strand, within ABZR87_RS01785 at 379.962 kb on - strand, within ABZR87_RS01785 at 380.054 kb on + strand, within ABZR87_RS01785 at 380.054 kb on + strand, within ABZR87_RS01785 at 380.054 kb on + strand, within ABZR87_RS01785 at 380.055 kb on - strand, within ABZR87_RS01785 at 380.055 kb on - strand, within ABZR87_RS01785 at 380.148 kb on - strand, within ABZR87_RS01785 at 380.165 kb on + strand, within ABZR87_RS01785 at 380.165 kb on + strand, within ABZR87_RS01785 at 380.166 kb on - strand, within ABZR87_RS01785 at 380.166 kb on - strand, within ABZR87_RS01785 at 380.166 kb on - strand, within ABZR87_RS01785 at 380.166 kb on - strand, within ABZR87_RS01785
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 378,830 + ABZR87_RS01775 0.38 +0.3 378,830 + ABZR87_RS01775 0.38 +2.3 378,831 - ABZR87_RS01775 0.38 +0.7 378,831 - ABZR87_RS01775 0.38 +0.5 378,831 - ABZR87_RS01775 0.38 +1.1 378,916 + ABZR87_RS01775 0.54 +0.1 378,917 - ABZR87_RS01775 0.54 +1.2 379,008 - ABZR87_RS01775 0.71 +0.2 379,055 + ABZR87_RS01775 0.79 -1.0 379,091 + ABZR87_RS01775 0.86 +1.3 379,091 + ABZR87_RS01775 0.86 -0.2 379,091 + ABZR87_RS01775 0.86 +0.7 379,092 - ABZR87_RS01775 0.86 -0.1 379,124 + +0.5 379,125 - +1.7 379,125 - -0.5 379,405 + ABZR87_RS01780 0.29 +0.2 379,405 + ABZR87_RS01780 0.29 +1.1 379,821 - +0.2 379,821 - -0.6 379,856 + +0.5 379,857 - +0.7 379,857 - -1.6 379,961 + ABZR87_RS01785 0.14 -0.4 379,962 - ABZR87_RS01785 0.14 -1.1 379,962 - ABZR87_RS01785 0.14 +0.6 379,962 - ABZR87_RS01785 0.14 -1.1 380,054 + ABZR87_RS01785 0.25 -0.8 380,054 + ABZR87_RS01785 0.25 +1.1 380,054 + ABZR87_RS01785 0.25 +0.2 380,055 - ABZR87_RS01785 0.25 -1.7 380,055 - ABZR87_RS01785 0.25 +1.1 380,148 - ABZR87_RS01785 0.36 -0.5 380,165 + ABZR87_RS01785 0.37 -0.2 380,165 + ABZR87_RS01785 0.37 +1.3 380,166 - ABZR87_RS01785 0.38 -0.8 380,166 - ABZR87_RS01785 0.38 -1.5 380,166 - ABZR87_RS01785 0.38 +0.0 380,166 - ABZR87_RS01785 0.38 -2.1
Or see this region's nucleotide sequence