Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01255 and ABZR87_RS01260 are separated by 152 nucleotides ABZR87_RS01260 and ABZR87_RS01265 are separated by 157 nucleotides
ABZR87_RS01255: ABZR87_RS01255 - LysR substrate-binding domain-containing protein, at 260,014 to 260,961
_RS01255
ABZR87_RS01260: ABZR87_RS01260 - metallophosphoesterase, at 261,114 to 262,280
_RS01260
ABZR87_RS01265: ABZR87_RS01265 - sensor domain-containing diguanylate cyclase, at 262,438 to 263,457
_RS01265
Position (kb) 261
262
263 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.171 kb on + strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.172 kb on - strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.217 kb on + strand, within ABZR87_RS01255 at 260.218 kb on - strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.256 kb on + strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.257 kb on - strand, within ABZR87_RS01255 at 260.384 kb on - strand, within ABZR87_RS01255 at 260.384 kb on - strand, within ABZR87_RS01255 at 260.480 kb on + strand, within ABZR87_RS01255 at 260.651 kb on + strand, within ABZR87_RS01255 at 260.652 kb on - strand, within ABZR87_RS01255 at 260.652 kb on - strand, within ABZR87_RS01255 at 260.652 kb on - strand, within ABZR87_RS01255 at 260.666 kb on + strand, within ABZR87_RS01255 at 260.666 kb on + strand, within ABZR87_RS01255 at 260.667 kb on - strand, within ABZR87_RS01255 at 260.667 kb on - strand, within ABZR87_RS01255 at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.939 kb on + strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.940 kb on - strand at 260.989 kb on + strand at 260.990 kb on - strand at 261.131 kb on + strand at 261.131 kb on + strand at 261.132 kb on - strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.210 kb on + strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.211 kb on - strand at 261.213 kb on - strand at 261.213 kb on - strand at 261.286 kb on + strand, within ABZR87_RS01260 at 261.453 kb on + strand, within ABZR87_RS01260 at 261.454 kb on - strand, within ABZR87_RS01260 at 261.513 kb on + strand, within ABZR87_RS01260 at 261.514 kb on - strand, within ABZR87_RS01260 at 261.514 kb on - strand, within ABZR87_RS01260 at 261.514 kb on - strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.515 kb on + strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.516 kb on - strand, within ABZR87_RS01260 at 261.518 kb on - strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.645 kb on + strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.646 kb on - strand, within ABZR87_RS01260 at 261.810 kb on + strand, within ABZR87_RS01260 at 261.810 kb on + strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.811 kb on - strand, within ABZR87_RS01260 at 261.813 kb on + strand, within ABZR87_RS01260 at 261.813 kb on + strand, within ABZR87_RS01260 at 262.185 kb on + strand at 262.185 kb on + strand at 262.185 kb on + strand at 262.186 kb on - strand at 262.186 kb on - strand at 262.186 kb on - strand at 262.186 kb on - strand at 262.206 kb on + strand at 262.207 kb on - strand at 262.226 kb on - strand at 262.252 kb on + strand at 262.252 kb on + strand at 262.252 kb on + strand at 262.253 kb on - strand at 262.261 kb on + strand at 262.262 kb on - strand at 262.333 kb on - strand at 262.333 kb on - strand at 262.333 kb on - strand at 262.376 kb on - strand at 262.376 kb on - strand at 262.376 kb on - strand at 262.376 kb on - strand at 262.624 kb on + strand, within ABZR87_RS01265 at 262.624 kb on + strand, within ABZR87_RS01265 at 262.624 kb on + strand, within ABZR87_RS01265 at 262.625 kb on - strand, within ABZR87_RS01265 at 262.625 kb on - strand, within ABZR87_RS01265 at 262.625 kb on - strand, within ABZR87_RS01265 at 262.960 kb on + strand, within ABZR87_RS01265 at 262.960 kb on + strand, within ABZR87_RS01265 at 262.960 kb on + strand, within ABZR87_RS01265 at 262.961 kb on - strand, within ABZR87_RS01265 at 262.961 kb on - strand, within ABZR87_RS01265 at 262.961 kb on - strand, within ABZR87_RS01265 at 262.961 kb on - strand, within ABZR87_RS01265 at 263.014 kb on + strand, within ABZR87_RS01265 at 263.014 kb on + strand, within ABZR87_RS01265 at 263.014 kb on + strand, within ABZR87_RS01265 at 263.014 kb on + strand, within ABZR87_RS01265 at 263.014 kb on + strand, within ABZR87_RS01265 at 263.015 kb on - strand, within ABZR87_RS01265 at 263.015 kb on - strand, within ABZR87_RS01265 at 263.015 kb on - strand, within ABZR87_RS01265 at 263.015 kb on - strand, within ABZR87_RS01265
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 260,171 + ABZR87_RS01255 0.17 -3.5 260,171 + ABZR87_RS01255 0.17 -1.8 260,171 + ABZR87_RS01255 0.17 -5.8 260,171 + ABZR87_RS01255 0.17 -5.6 260,171 + ABZR87_RS01255 0.17 -3.6 260,171 + ABZR87_RS01255 0.17 -4.0 260,172 - ABZR87_RS01255 0.17 -3.6 260,172 - ABZR87_RS01255 0.17 -2.3 260,172 - ABZR87_RS01255 0.17 -3.8 260,172 - ABZR87_RS01255 0.17 -3.6 260,172 - ABZR87_RS01255 0.17 -1.2 260,172 - ABZR87_RS01255 0.17 -4.9 260,217 + ABZR87_RS01255 0.21 -3.4 260,217 + ABZR87_RS01255 0.21 -4.0 260,217 + ABZR87_RS01255 0.21 -3.4 260,217 + ABZR87_RS01255 0.21 -2.5 260,218 - ABZR87_RS01255 0.22 -3.8 260,256 + ABZR87_RS01255 0.26 -1.3 260,256 + ABZR87_RS01255 0.26 -2.2 260,256 + ABZR87_RS01255 0.26 -4.9 260,256 + ABZR87_RS01255 0.26 -4.2 260,256 + ABZR87_RS01255 0.26 -2.3 260,256 + ABZR87_RS01255 0.26 -3.7 260,256 + ABZR87_RS01255 0.26 -4.5 260,256 + ABZR87_RS01255 0.26 -3.3 260,256 + ABZR87_RS01255 0.26 -1.7 260,256 + ABZR87_RS01255 0.26 -4.4 260,256 + ABZR87_RS01255 0.26 -4.6 260,256 + ABZR87_RS01255 0.26 -4.2 260,256 + ABZR87_RS01255 0.26 -4.8 260,256 + ABZR87_RS01255 0.26 -4.0 260,257 - ABZR87_RS01255 0.26 -4.3 260,257 - ABZR87_RS01255 0.26 -3.4 260,257 - ABZR87_RS01255 0.26 -4.1 260,257 - ABZR87_RS01255 0.26 -5.8 260,257 - ABZR87_RS01255 0.26 -6.3 260,257 - ABZR87_RS01255 0.26 -4.1 260,257 - ABZR87_RS01255 0.26 -3.1 260,257 - ABZR87_RS01255 0.26 -3.1 260,257 - ABZR87_RS01255 0.26 -3.0 260,257 - ABZR87_RS01255 0.26 -4.7 260,257 - ABZR87_RS01255 0.26 -4.2 260,257 - ABZR87_RS01255 0.26 -2.0 260,257 - ABZR87_RS01255 0.26 -3.9 260,257 - ABZR87_RS01255 0.26 -0.8 260,257 - ABZR87_RS01255 0.26 -3.8 260,384 - ABZR87_RS01255 0.39 -3.6 260,384 - ABZR87_RS01255 0.39 -4.1 260,480 + ABZR87_RS01255 0.49 +1.4 260,651 + ABZR87_RS01255 0.67 -2.3 260,652 - ABZR87_RS01255 0.67 -2.3 260,652 - ABZR87_RS01255 0.67 -3.1 260,652 - ABZR87_RS01255 0.67 -2.2 260,666 + ABZR87_RS01255 0.69 -0.3 260,666 + ABZR87_RS01255 0.69 -0.5 260,667 - ABZR87_RS01255 0.69 -1.7 260,667 - ABZR87_RS01255 0.69 -0.9 260,939 + -1.9 260,939 + -1.3 260,939 + -3.2 260,939 + -4.5 260,939 + -2.4 260,939 + -3.5 260,939 + -2.3 260,939 + -2.6 260,939 + -4.2 260,939 + -1.0 260,939 + -3.4 260,940 - -4.9 260,940 - -5.5 260,940 - -4.9 260,940 - -3.4 260,940 - -6.3 260,940 - -2.7 260,940 - -4.5 260,940 - +0.1 260,940 - -4.0 260,989 + -0.9 260,990 - +0.9 261,131 + +0.5 261,131 + +0.0 261,132 - +0.7 261,210 + -0.5 261,210 + -1.2 261,210 + -1.3 261,210 + +0.0 261,210 + -0.3 261,210 + -0.9 261,210 + -0.3 261,211 - +1.9 261,211 - +0.1 261,211 - +0.4 261,211 - -1.2 261,211 - +0.8 261,211 - +1.7 261,213 - -0.4 261,213 - +1.4 261,286 + ABZR87_RS01260 0.15 -0.4 261,453 + ABZR87_RS01260 0.29 +1.1 261,454 - ABZR87_RS01260 0.29 +0.5 261,513 + ABZR87_RS01260 0.34 -0.0 261,514 - ABZR87_RS01260 0.34 +1.1 261,514 - ABZR87_RS01260 0.34 -0.1 261,514 - ABZR87_RS01260 0.34 -1.4 261,515 + ABZR87_RS01260 0.34 -0.2 261,515 + ABZR87_RS01260 0.34 +0.4 261,515 + ABZR87_RS01260 0.34 -0.4 261,515 + ABZR87_RS01260 0.34 +1.7 261,516 - ABZR87_RS01260 0.34 +0.4 261,516 - ABZR87_RS01260 0.34 +0.4 261,516 - ABZR87_RS01260 0.34 +1.3 261,516 - ABZR87_RS01260 0.34 -0.3 261,516 - ABZR87_RS01260 0.34 +0.7 261,518 - ABZR87_RS01260 0.35 -0.3 261,645 + ABZR87_RS01260 0.46 +0.3 261,645 + ABZR87_RS01260 0.46 +0.8 261,645 + ABZR87_RS01260 0.46 -0.6 261,645 + ABZR87_RS01260 0.46 -0.9 261,645 + ABZR87_RS01260 0.46 -0.0 261,645 + ABZR87_RS01260 0.46 -0.8 261,645 + ABZR87_RS01260 0.46 +1.6 261,646 - ABZR87_RS01260 0.46 -1.0 261,646 - ABZR87_RS01260 0.46 +1.7 261,646 - ABZR87_RS01260 0.46 +1.0 261,646 - ABZR87_RS01260 0.46 -0.1 261,646 - ABZR87_RS01260 0.46 +0.9 261,646 - ABZR87_RS01260 0.46 -0.8 261,646 - ABZR87_RS01260 0.46 -0.5 261,810 + ABZR87_RS01260 0.60 -1.2 261,810 + ABZR87_RS01260 0.60 -0.5 261,811 - ABZR87_RS01260 0.60 -0.5 261,811 - ABZR87_RS01260 0.60 -1.3 261,811 - ABZR87_RS01260 0.60 -0.6 261,811 - ABZR87_RS01260 0.60 +0.4 261,811 - ABZR87_RS01260 0.60 -0.2 261,813 + ABZR87_RS01260 0.60 +1.3 261,813 + ABZR87_RS01260 0.60 +0.3 262,185 + -0.8 262,185 + +0.8 262,185 + +0.2 262,186 - +0.4 262,186 - +1.2 262,186 - -0.1 262,186 - +0.7 262,206 + +0.1 262,207 - -0.4 262,226 - -0.2 262,252 + -0.8 262,252 + +1.0 262,252 + +1.0 262,253 - -1.4 262,261 + +1.4 262,262 - -0.7 262,333 - -0.3 262,333 - +1.2 262,333 - -1.0 262,376 - -2.5 262,376 - -0.3 262,376 - -0.5 262,376 - -1.0 262,624 + ABZR87_RS01265 0.18 -0.2 262,624 + ABZR87_RS01265 0.18 -1.4 262,624 + ABZR87_RS01265 0.18 -0.4 262,625 - ABZR87_RS01265 0.18 +0.7 262,625 - ABZR87_RS01265 0.18 +0.1 262,625 - ABZR87_RS01265 0.18 -0.7 262,960 + ABZR87_RS01265 0.51 +0.0 262,960 + ABZR87_RS01265 0.51 -1.4 262,960 + ABZR87_RS01265 0.51 -0.4 262,961 - ABZR87_RS01265 0.51 -1.0 262,961 - ABZR87_RS01265 0.51 -0.9 262,961 - ABZR87_RS01265 0.51 -1.9 262,961 - ABZR87_RS01265 0.51 -0.6 263,014 + ABZR87_RS01265 0.56 -0.1 263,014 + ABZR87_RS01265 0.56 +0.8 263,014 + ABZR87_RS01265 0.56 +1.0 263,014 + ABZR87_RS01265 0.56 +1.3 263,014 + ABZR87_RS01265 0.56 +0.2 263,015 - ABZR87_RS01265 0.57 +0.8 263,015 - ABZR87_RS01265 0.57 -2.6 263,015 - ABZR87_RS01265 0.57 -0.5 263,015 - ABZR87_RS01265 0.57 +0.8
Or see this region's nucleotide sequence