Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01095

Experiment: no_plant_rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01090 and ABZR87_RS01095 are separated by 176 nucleotidesABZR87_RS01095 and ABZR87_RS01100 are separated by 5 nucleotidesABZR87_RS01100 and ABZR87_RS01105 are separated by 30 nucleotides ABZR87_RS01090: ABZR87_RS01090 - bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase, at 220,113 to 222,956 _RS01090 ABZR87_RS01095: ABZR87_RS01095 - YhdP family protein, at 223,133 to 227,422 _RS01095 ABZR87_RS01100: ABZR87_RS01100 - carbon-nitrogen hydrolase family protein, at 227,428 to 228,297 _RS01100 ABZR87_RS01105: ABZR87_RS01105 - metalloprotease TldD, at 228,328 to 229,791 _RS01105 Position (kb) 223 224 225 226 227 228Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 222.154 kb on + strand, within ABZR87_RS01090at 222.154 kb on + strand, within ABZR87_RS01090at 222.199 kb on + strand, within ABZR87_RS01090at 222.232 kb on + strand, within ABZR87_RS01090at 222.232 kb on + strand, within ABZR87_RS01090at 222.233 kb on - strand, within ABZR87_RS01090at 222.233 kb on - strand, within ABZR87_RS01090at 222.233 kb on - strand, within ABZR87_RS01090at 222.233 kb on - strand, within ABZR87_RS01090at 222.233 kb on - strand, within ABZR87_RS01090at 222.233 kb on - strand, within ABZR87_RS01090at 222.313 kb on + strand, within ABZR87_RS01090at 222.313 kb on + strand, within ABZR87_RS01090at 222.314 kb on - strand, within ABZR87_RS01090at 222.314 kb on - strand, within ABZR87_RS01090at 222.314 kb on - strand, within ABZR87_RS01090at 222.314 kb on - strand, within ABZR87_RS01090at 222.373 kb on + strand, within ABZR87_RS01090at 222.373 kb on + strand, within ABZR87_RS01090at 222.373 kb on + strand, within ABZR87_RS01090at 222.374 kb on - strand, within ABZR87_RS01090at 222.427 kb on + strand, within ABZR87_RS01090at 222.428 kb on - strand, within ABZR87_RS01090at 222.862 kb on + strandat 223.117 kb on + strandat 223.123 kb on - strandat 223.475 kb on + strandat 223.475 kb on + strandat 223.475 kb on + strandat 223.476 kb on - strandat 223.476 kb on - strandat 223.993 kb on + strand, within ABZR87_RS01095at 223.994 kb on - strand, within ABZR87_RS01095at 223.994 kb on - strand, within ABZR87_RS01095at 224.021 kb on + strand, within ABZR87_RS01095at 224.021 kb on + strand, within ABZR87_RS01095at 224.021 kb on + strand, within ABZR87_RS01095at 224.022 kb on - strand, within ABZR87_RS01095at 224.569 kb on + strand, within ABZR87_RS01095at 224.569 kb on + strand, within ABZR87_RS01095at 224.569 kb on + strand, within ABZR87_RS01095at 224.570 kb on - strand, within ABZR87_RS01095at 224.831 kb on + strand, within ABZR87_RS01095at 224.831 kb on + strand, within ABZR87_RS01095at 224.832 kb on - strand, within ABZR87_RS01095at 224.832 kb on - strand, within ABZR87_RS01095at 224.912 kb on + strand, within ABZR87_RS01095at 224.912 kb on + strand, within ABZR87_RS01095at 224.912 kb on + strand, within ABZR87_RS01095at 224.912 kb on + strand, within ABZR87_RS01095at 224.912 kb on + strand, within ABZR87_RS01095at 224.913 kb on - strand, within ABZR87_RS01095at 224.913 kb on - strand, within ABZR87_RS01095at 224.913 kb on - strand, within ABZR87_RS01095at 224.913 kb on - strand, within ABZR87_RS01095at 224.999 kb on + strand, within ABZR87_RS01095at 224.999 kb on + strand, within ABZR87_RS01095at 225.000 kb on - strand, within ABZR87_RS01095at 225.000 kb on - strand, within ABZR87_RS01095at 225.035 kb on + strand, within ABZR87_RS01095at 225.035 kb on + strand, within ABZR87_RS01095at 225.035 kb on + strand, within ABZR87_RS01095at 225.035 kb on + strand, within ABZR87_RS01095at 225.036 kb on - strand, within ABZR87_RS01095at 225.036 kb on - strand, within ABZR87_RS01095at 225.067 kb on + strand, within ABZR87_RS01095at 225.068 kb on - strand, within ABZR87_RS01095at 225.170 kb on + strand, within ABZR87_RS01095at 225.170 kb on + strand, within ABZR87_RS01095at 225.170 kb on + strand, within ABZR87_RS01095at 225.170 kb on + strand, within ABZR87_RS01095at 225.171 kb on - strand, within ABZR87_RS01095at 225.409 kb on + strand, within ABZR87_RS01095at 225.428 kb on + strand, within ABZR87_RS01095at 225.428 kb on + strand, within ABZR87_RS01095at 225.428 kb on + strand, within ABZR87_RS01095at 225.429 kb on - strand, within ABZR87_RS01095at 225.429 kb on - strand, within ABZR87_RS01095at 225.840 kb on - strand, within ABZR87_RS01095at 225.998 kb on - strand, within ABZR87_RS01095at 226.044 kb on - strand, within ABZR87_RS01095at 226.044 kb on - strand, within ABZR87_RS01095at 226.099 kb on - strand, within ABZR87_RS01095at 226.283 kb on + strand, within ABZR87_RS01095at 226.284 kb on - strand, within ABZR87_RS01095at 226.284 kb on - strand, within ABZR87_RS01095at 226.904 kb on + strand, within ABZR87_RS01095at 227.330 kb on + strandat 227.331 kb on - strandat 227.331 kb on - strandat 227.387 kb on - strandat 227.387 kb on - strandat 227.420 kb on + strandat 227.420 kb on + strandat 227.421 kb on - strandat 227.421 kb on - strandat 227.614 kb on + strand, within ABZR87_RS01100at 227.615 kb on - strand, within ABZR87_RS01100at 227.615 kb on - strand, within ABZR87_RS01100at 227.615 kb on - strand, within ABZR87_RS01100at 227.782 kb on - strand, within ABZR87_RS01100at 227.782 kb on - strand, within ABZR87_RS01100at 227.824 kb on + strand, within ABZR87_RS01100at 227.824 kb on + strand, within ABZR87_RS01100at 227.825 kb on - strand, within ABZR87_RS01100at 227.825 kb on - strand, within ABZR87_RS01100at 227.825 kb on - strand, within ABZR87_RS01100at 227.869 kb on + strand, within ABZR87_RS01100at 227.869 kb on + strand, within ABZR87_RS01100at 227.870 kb on - strand, within ABZR87_RS01100at 227.870 kb on - strand, within ABZR87_RS01100at 227.953 kb on + strand, within ABZR87_RS01100at 227.954 kb on - strand, within ABZR87_RS01100at 227.954 kb on - strand, within ABZR87_RS01100at 227.954 kb on - strand, within ABZR87_RS01100at 227.954 kb on - strand, within ABZR87_RS01100at 227.954 kb on - strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.037 kb on + strand, within ABZR87_RS01100at 228.038 kb on - strand, within ABZR87_RS01100at 228.038 kb on - strand, within ABZR87_RS01100at 228.038 kb on - strand, within ABZR87_RS01100at 228.038 kb on - strand, within ABZR87_RS01100at 228.038 kb on - strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.100 kb on + strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.101 kb on - strand, within ABZR87_RS01100at 228.295 kb on + strandat 228.295 kb on + strandat 228.295 kb on + strandat 228.295 kb on + strandat 228.295 kb on + strandat 228.295 kb on + strandat 228.295 kb on + strandat 228.295 kb on + strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strandat 228.296 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB
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222,154 + ABZR87_RS01090 0.72 -2.3
222,154 + ABZR87_RS01090 0.72 -0.3
222,199 + ABZR87_RS01090 0.73 -1.9
222,232 + ABZR87_RS01090 0.75 -0.7
222,232 + ABZR87_RS01090 0.75 -1.3
222,233 - ABZR87_RS01090 0.75 -2.9
222,233 - ABZR87_RS01090 0.75 +1.1
222,233 - ABZR87_RS01090 0.75 -0.6
222,233 - ABZR87_RS01090 0.75 -2.0
222,233 - ABZR87_RS01090 0.75 +1.1
222,233 - ABZR87_RS01090 0.75 -0.7
222,313 + ABZR87_RS01090 0.77 -1.1
222,313 + ABZR87_RS01090 0.77 +0.4
222,314 - ABZR87_RS01090 0.77 -2.8
222,314 - ABZR87_RS01090 0.77 -0.6
222,314 - ABZR87_RS01090 0.77 -0.9
222,314 - ABZR87_RS01090 0.77 -2.0
222,373 + ABZR87_RS01090 0.79 -0.9
222,373 + ABZR87_RS01090 0.79 -2.6
222,373 + ABZR87_RS01090 0.79 -1.0
222,374 - ABZR87_RS01090 0.80 -3.4
222,427 + ABZR87_RS01090 0.81 -1.8
222,428 - ABZR87_RS01090 0.81 -0.2
222,862 + -2.3
223,117 + +0.8
223,123 - -2.6
223,475 + +0.3
223,475 + -0.6
223,475 + -2.3
223,476 - +0.2
223,476 - +0.1
223,993 + ABZR87_RS01095 0.20 +0.0
223,994 - ABZR87_RS01095 0.20 -0.4
223,994 - ABZR87_RS01095 0.20 +0.3
224,021 + ABZR87_RS01095 0.21 -1.6
224,021 + ABZR87_RS01095 0.21 -1.2
224,021 + ABZR87_RS01095 0.21 -0.6
224,022 - ABZR87_RS01095 0.21 -1.1
224,569 + ABZR87_RS01095 0.33 -1.0
224,569 + ABZR87_RS01095 0.33 -1.8
224,569 + ABZR87_RS01095 0.33 -1.8
224,570 - ABZR87_RS01095 0.33 +0.3
224,831 + ABZR87_RS01095 0.40 +0.4
224,831 + ABZR87_RS01095 0.40 -1.9
224,832 - ABZR87_RS01095 0.40 +1.0
224,832 - ABZR87_RS01095 0.40 -1.8
224,912 + ABZR87_RS01095 0.41 -0.3
224,912 + ABZR87_RS01095 0.41 +0.6
224,912 + ABZR87_RS01095 0.41 -0.1
224,912 + ABZR87_RS01095 0.41 +1.4
224,912 + ABZR87_RS01095 0.41 -0.2
224,913 - ABZR87_RS01095 0.41 -0.8
224,913 - ABZR87_RS01095 0.41 -0.8
224,913 - ABZR87_RS01095 0.41 -0.7
224,913 - ABZR87_RS01095 0.41 -1.1
224,999 + ABZR87_RS01095 0.43 -0.0
224,999 + ABZR87_RS01095 0.43 -0.9
225,000 - ABZR87_RS01095 0.44 +0.1
225,000 - ABZR87_RS01095 0.44 -0.2
225,035 + ABZR87_RS01095 0.44 +0.4
225,035 + ABZR87_RS01095 0.44 -0.4
225,035 + ABZR87_RS01095 0.44 +0.9
225,035 + ABZR87_RS01095 0.44 -0.2
225,036 - ABZR87_RS01095 0.44 -0.2
225,036 - ABZR87_RS01095 0.44 -1.9
225,067 + ABZR87_RS01095 0.45 +0.7
225,068 - ABZR87_RS01095 0.45 +0.3
225,170 + ABZR87_RS01095 0.47 -1.3
225,170 + ABZR87_RS01095 0.47 -1.2
225,170 + ABZR87_RS01095 0.47 -1.0
225,170 + ABZR87_RS01095 0.47 -1.4
225,171 - ABZR87_RS01095 0.48 -1.7
225,409 + ABZR87_RS01095 0.53 +0.2
225,428 + ABZR87_RS01095 0.53 -0.8
225,428 + ABZR87_RS01095 0.53 +0.2
225,428 + ABZR87_RS01095 0.53 -0.2
225,429 - ABZR87_RS01095 0.54 -0.9
225,429 - ABZR87_RS01095 0.54 +0.2
225,840 - ABZR87_RS01095 0.63 -1.3
225,998 - ABZR87_RS01095 0.67 -0.1
226,044 - ABZR87_RS01095 0.68 -3.0
226,044 - ABZR87_RS01095 0.68 -0.3
226,099 - ABZR87_RS01095 0.69 -0.6
226,283 + ABZR87_RS01095 0.73 -2.7
226,284 - ABZR87_RS01095 0.73 -0.5
226,284 - ABZR87_RS01095 0.73 -0.8
226,904 + ABZR87_RS01095 0.88 +1.1
227,330 + -2.5
227,331 - -0.2
227,331 - +0.1
227,387 - -0.5
227,387 - +0.4
227,420 + -0.1
227,420 + -0.7
227,421 - +1.0
227,421 - -0.4
227,614 + ABZR87_RS01100 0.21 -0.4
227,615 - ABZR87_RS01100 0.21 +0.5
227,615 - ABZR87_RS01100 0.21 +0.4
227,615 - ABZR87_RS01100 0.21 -0.1
227,782 - ABZR87_RS01100 0.41 -1.8
227,782 - ABZR87_RS01100 0.41 -0.3
227,824 + ABZR87_RS01100 0.46 -1.2
227,824 + ABZR87_RS01100 0.46 -0.3
227,825 - ABZR87_RS01100 0.46 +0.8
227,825 - ABZR87_RS01100 0.46 +0.2
227,825 - ABZR87_RS01100 0.46 -0.0
227,869 + ABZR87_RS01100 0.51 +0.2
227,869 + ABZR87_RS01100 0.51 -0.3
227,870 - ABZR87_RS01100 0.51 +0.8
227,870 - ABZR87_RS01100 0.51 +0.6
227,953 + ABZR87_RS01100 0.60 +4.1
227,954 - ABZR87_RS01100 0.60 +0.9
227,954 - ABZR87_RS01100 0.60 +0.8
227,954 - ABZR87_RS01100 0.60 -0.7
227,954 - ABZR87_RS01100 0.60 +0.2
227,954 - ABZR87_RS01100 0.60 -0.0
228,037 + ABZR87_RS01100 0.70 -0.4
228,037 + ABZR87_RS01100 0.70 -1.0
228,037 + ABZR87_RS01100 0.70 -0.4
228,037 + ABZR87_RS01100 0.70 +0.4
228,037 + ABZR87_RS01100 0.70 +0.5
228,037 + ABZR87_RS01100 0.70 -1.0
228,037 + ABZR87_RS01100 0.70 -1.3
228,037 + ABZR87_RS01100 0.70 -0.3
228,037 + ABZR87_RS01100 0.70 +0.9
228,037 + ABZR87_RS01100 0.70 -1.2
228,038 - ABZR87_RS01100 0.70 +0.0
228,038 - ABZR87_RS01100 0.70 +0.3
228,038 - ABZR87_RS01100 0.70 +0.2
228,038 - ABZR87_RS01100 0.70 -0.1
228,038 - ABZR87_RS01100 0.70 +0.4
228,100 + ABZR87_RS01100 0.77 -3.4
228,100 + ABZR87_RS01100 0.77 +0.3
228,100 + ABZR87_RS01100 0.77 -1.2
228,100 + ABZR87_RS01100 0.77 -0.4
228,100 + ABZR87_RS01100 0.77 +1.5
228,100 + ABZR87_RS01100 0.77 -1.7
228,100 + ABZR87_RS01100 0.77 +1.0
228,100 + ABZR87_RS01100 0.77 -3.0
228,100 + ABZR87_RS01100 0.77 -1.4
228,100 + ABZR87_RS01100 0.77 -0.1
228,100 + ABZR87_RS01100 0.77 +0.1
228,100 + ABZR87_RS01100 0.77 -0.1
228,101 - ABZR87_RS01100 0.77 +0.2
228,101 - ABZR87_RS01100 0.77 -0.8
228,101 - ABZR87_RS01100 0.77 +0.3
228,101 - ABZR87_RS01100 0.77 +0.9
228,101 - ABZR87_RS01100 0.77 -0.3
228,101 - ABZR87_RS01100 0.77 -0.4
228,101 - ABZR87_RS01100 0.77 +0.3
228,101 - ABZR87_RS01100 0.77 +0.1
228,101 - ABZR87_RS01100 0.77 -0.7
228,101 - ABZR87_RS01100 0.77 +0.9
228,295 + -0.2
228,295 + -0.8
228,295 + +0.8
228,295 + +0.2
228,295 + -0.2
228,295 + -3.1
228,295 + +0.2
228,295 + -0.2
228,296 - -0.4
228,296 - +1.0
228,296 - +1.3
228,296 - -0.7
228,296 - -0.1
228,296 - -0.8
228,296 - +1.1
228,296 - -0.0
228,296 - -0.8
228,296 - +0.6
228,296 - -1.2

Or see this region's nucleotide sequence