Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01050 and ABZR87_RS01055 are separated by 125 nucleotides ABZR87_RS01055 and ABZR87_RS01060 are separated by 111 nucleotides
ABZR87_RS01050: ABZR87_RS01050 - taurine ABC transporter substrate-binding protein, at 209,647 to 210,711
_RS01050
ABZR87_RS01055: ABZR87_RS01055 - heat-inducible transcriptional repressor HrcA, at 210,837 to 211,895
_RS01055
ABZR87_RS01060: ABZR87_RS01060 - NAD kinase, at 212,007 to 212,945
_RS01060
Position (kb) 210
211
212 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 209.864 kb on + strand, within ABZR87_RS01050 at 209.864 kb on + strand, within ABZR87_RS01050 at 209.864 kb on + strand, within ABZR87_RS01050 at 209.865 kb on - strand, within ABZR87_RS01050 at 209.865 kb on - strand, within ABZR87_RS01050 at 209.865 kb on - strand, within ABZR87_RS01050 at 209.865 kb on - strand, within ABZR87_RS01050 at 209.865 kb on - strand, within ABZR87_RS01050 at 209.865 kb on - strand, within ABZR87_RS01050 at 209.865 kb on - strand, within ABZR87_RS01050 at 209.865 kb on - strand, within ABZR87_RS01050 at 209.969 kb on + strand, within ABZR87_RS01050 at 209.969 kb on + strand, within ABZR87_RS01050 at 209.969 kb on + strand, within ABZR87_RS01050 at 210.153 kb on + strand, within ABZR87_RS01050 at 210.153 kb on + strand, within ABZR87_RS01050 at 210.154 kb on - strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.296 kb on - strand, within ABZR87_RS01050 at 210.528 kb on + strand, within ABZR87_RS01050 at 210.528 kb on + strand, within ABZR87_RS01050 at 210.528 kb on + strand, within ABZR87_RS01050 at 210.528 kb on + strand, within ABZR87_RS01050 at 210.529 kb on - strand, within ABZR87_RS01050 at 210.529 kb on - strand, within ABZR87_RS01050 at 210.529 kb on - strand, within ABZR87_RS01050 at 210.530 kb on + strand, within ABZR87_RS01050 at 210.530 kb on + strand, within ABZR87_RS01050 at 210.596 kb on + strand, within ABZR87_RS01050 at 210.806 kb on + strand at 210.806 kb on + strand at 210.806 kb on + strand at 210.806 kb on + strand at 210.807 kb on - strand at 210.807 kb on - strand at 210.807 kb on - strand at 210.807 kb on - strand at 210.841 kb on + strand at 210.841 kb on + strand at 210.841 kb on + strand at 210.841 kb on - strand at 210.842 kb on - strand at 210.842 kb on - strand at 210.842 kb on - strand at 210.842 kb on - strand at 210.842 kb on - strand at 210.842 kb on - strand at 210.878 kb on + strand at 210.904 kb on + strand at 210.904 kb on + strand at 210.904 kb on + strand at 210.904 kb on + strand at 210.904 kb on + strand at 210.904 kb on + strand at 210.905 kb on - strand at 210.905 kb on - strand at 210.905 kb on - strand at 210.905 kb on - strand at 210.905 kb on - strand at 210.905 kb on - strand at 210.905 kb on - strand at 210.905 kb on - strand at 210.964 kb on + strand, within ABZR87_RS01055 at 210.965 kb on - strand, within ABZR87_RS01055 at 210.965 kb on - strand, within ABZR87_RS01055 at 210.965 kb on - strand, within ABZR87_RS01055 at 210.965 kb on - strand, within ABZR87_RS01055 at 211.053 kb on + strand, within ABZR87_RS01055 at 211.054 kb on - strand, within ABZR87_RS01055 at 211.115 kb on + strand, within ABZR87_RS01055 at 211.116 kb on - strand, within ABZR87_RS01055 at 211.118 kb on - strand, within ABZR87_RS01055 at 211.321 kb on + strand, within ABZR87_RS01055 at 211.321 kb on + strand, within ABZR87_RS01055 at 211.321 kb on + strand, within ABZR87_RS01055 at 211.321 kb on + strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.322 kb on - strand, within ABZR87_RS01055 at 211.325 kb on + strand, within ABZR87_RS01055 at 211.325 kb on + strand, within ABZR87_RS01055 at 211.355 kb on - strand, within ABZR87_RS01055 at 211.355 kb on - strand, within ABZR87_RS01055 at 211.355 kb on - strand, within ABZR87_RS01055 at 211.670 kb on + strand, within ABZR87_RS01055 at 211.804 kb on + strand at 211.804 kb on + strand at 211.805 kb on - strand at 211.848 kb on - strand at 211.849 kb on + strand at 211.849 kb on + strand at 211.849 kb on + strand at 211.849 kb on + strand at 211.849 kb on + strand at 211.850 kb on - strand at 211.850 kb on - strand at 211.850 kb on - strand at 211.850 kb on - strand at 211.851 kb on - strand at 211.984 kb on + strand at 211.985 kb on - strand at 211.985 kb on - strand at 211.987 kb on - strand at 211.988 kb on + strand at 211.991 kb on - strand at 211.997 kb on + strand at 211.997 kb on + strand at 211.997 kb on + strand at 211.997 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 209,864 + ABZR87_RS01050 0.20 +0.2 209,864 + ABZR87_RS01050 0.20 +0.4 209,864 + ABZR87_RS01050 0.20 -0.1 209,865 - ABZR87_RS01050 0.20 +1.2 209,865 - ABZR87_RS01050 0.20 -0.2 209,865 - ABZR87_RS01050 0.20 -0.1 209,865 - ABZR87_RS01050 0.20 -1.4 209,865 - ABZR87_RS01050 0.20 -0.9 209,865 - ABZR87_RS01050 0.20 -1.5 209,865 - ABZR87_RS01050 0.20 -0.1 209,865 - ABZR87_RS01050 0.20 +0.3 209,969 + ABZR87_RS01050 0.30 +0.1 209,969 + ABZR87_RS01050 0.30 -1.0 209,969 + ABZR87_RS01050 0.30 -0.3 210,153 + ABZR87_RS01050 0.48 -1.7 210,153 + ABZR87_RS01050 0.48 -0.3 210,154 - ABZR87_RS01050 0.48 -1.8 210,290 + ABZR87_RS01050 0.60 +0.5 210,290 + ABZR87_RS01050 0.60 -1.4 210,290 + ABZR87_RS01050 0.60 +0.3 210,290 + ABZR87_RS01050 0.60 +2.3 210,290 + ABZR87_RS01050 0.60 -1.1 210,290 + ABZR87_RS01050 0.60 -1.4 210,290 + ABZR87_RS01050 0.60 -0.2 210,290 + ABZR87_RS01050 0.60 +1.5 210,290 + ABZR87_RS01050 0.60 +1.3 210,291 - ABZR87_RS01050 0.60 -0.5 210,291 - ABZR87_RS01050 0.60 -0.5 210,291 - ABZR87_RS01050 0.60 -0.2 210,291 - ABZR87_RS01050 0.60 +0.3 210,291 - ABZR87_RS01050 0.60 +0.1 210,291 - ABZR87_RS01050 0.60 -0.3 210,291 - ABZR87_RS01050 0.60 -2.8 210,291 - ABZR87_RS01050 0.60 -1.6 210,291 - ABZR87_RS01050 0.60 +1.0 210,291 - ABZR87_RS01050 0.60 +0.9 210,291 - ABZR87_RS01050 0.60 +0.6 210,291 - ABZR87_RS01050 0.60 +0.4 210,296 - ABZR87_RS01050 0.61 +0.2 210,528 + ABZR87_RS01050 0.83 -2.3 210,528 + ABZR87_RS01050 0.83 +0.6 210,528 + ABZR87_RS01050 0.83 -0.7 210,528 + ABZR87_RS01050 0.83 +0.3 210,529 - ABZR87_RS01050 0.83 -2.2 210,529 - ABZR87_RS01050 0.83 -0.5 210,529 - ABZR87_RS01050 0.83 -0.1 210,530 + ABZR87_RS01050 0.83 -0.8 210,530 + ABZR87_RS01050 0.83 +0.2 210,596 + ABZR87_RS01050 0.89 -2.6 210,806 + +0.3 210,806 + -0.2 210,806 + -2.4 210,806 + +0.8 210,807 - -0.4 210,807 - +0.9 210,807 - +0.3 210,807 - -0.2 210,841 + -0.3 210,841 + +0.3 210,841 + -0.5 210,841 - -1.4 210,842 - -1.1 210,842 - +0.3 210,842 - -0.6 210,842 - +0.9 210,842 - -0.6 210,842 - +1.4 210,878 + +5.0 210,904 + +4.7 210,904 + +4.8 210,904 + +5.5 210,904 + +4.9 210,904 + +4.2 210,904 + +5.0 210,905 - +4.3 210,905 - +5.9 210,905 - +6.5 210,905 - +7.2 210,905 - +5.1 210,905 - +4.3 210,905 - +5.5 210,905 - +4.0 210,964 + ABZR87_RS01055 0.12 +3.9 210,965 - ABZR87_RS01055 0.12 +2.9 210,965 - ABZR87_RS01055 0.12 +5.1 210,965 - ABZR87_RS01055 0.12 +5.7 210,965 - ABZR87_RS01055 0.12 +5.9 211,053 + ABZR87_RS01055 0.20 +6.1 211,054 - ABZR87_RS01055 0.20 +4.6 211,115 + ABZR87_RS01055 0.26 +7.0 211,116 - ABZR87_RS01055 0.26 +7.3 211,118 - ABZR87_RS01055 0.27 +4.8 211,321 + ABZR87_RS01055 0.46 +6.0 211,321 + ABZR87_RS01055 0.46 +5.7 211,321 + ABZR87_RS01055 0.46 +5.2 211,321 + ABZR87_RS01055 0.46 +4.3 211,322 - ABZR87_RS01055 0.46 +5.3 211,322 - ABZR87_RS01055 0.46 +4.4 211,322 - ABZR87_RS01055 0.46 +5.9 211,322 - ABZR87_RS01055 0.46 +5.1 211,322 - ABZR87_RS01055 0.46 +3.3 211,322 - ABZR87_RS01055 0.46 +4.8 211,322 - ABZR87_RS01055 0.46 +4.9 211,322 - ABZR87_RS01055 0.46 +4.6 211,322 - ABZR87_RS01055 0.46 +6.3 211,322 - ABZR87_RS01055 0.46 +5.7 211,322 - ABZR87_RS01055 0.46 +5.6 211,322 - ABZR87_RS01055 0.46 +5.8 211,325 + ABZR87_RS01055 0.46 +4.7 211,325 + ABZR87_RS01055 0.46 +6.4 211,355 - ABZR87_RS01055 0.49 +5.3 211,355 - ABZR87_RS01055 0.49 +5.7 211,355 - ABZR87_RS01055 0.49 +3.2 211,670 + ABZR87_RS01055 0.79 +5.1 211,804 + +4.7 211,804 + +4.5 211,805 - +2.9 211,848 - +6.0 211,849 + +4.0 211,849 + +5.5 211,849 + +4.1 211,849 + +4.9 211,849 + +3.3 211,850 - +5.0 211,850 - +5.6 211,850 - +3.8 211,850 - +7.6 211,851 - +4.5 211,984 + -1.2 211,985 - -0.8 211,985 - -0.3 211,987 - -2.0 211,988 + -0.7 211,991 - +0.4 211,997 + -2.2 211,997 + +1.4 211,997 + +0.4 211,997 + -3.4
Or see this region's nucleotide sequence