Experiment: no_plant_rhizosphere sample 3; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01035 and ABZR87_RS01040 are separated by 7 nucleotides ABZR87_RS01040 and ABZR87_RS01045 overlap by 4 nucleotides ABZR87_RS01045 and ABZR87_RS01050 overlap by 4 nucleotides
ABZR87_RS01035: ABZR87_RS01035 - histidine utilization repressor, at 207,272 to 207,985
_RS01035
ABZR87_RS01040: ABZR87_RS01040 - ABC transporter permease subunit, at 207,993 to 208,862
_RS01040
ABZR87_RS01045: ABZR87_RS01045 - ATP-binding cassette domain-containing protein, at 208,859 to 209,650
_RS01045
ABZR87_RS01050: ABZR87_RS01050 - taurine ABC transporter substrate-binding protein, at 209,647 to 210,711
_RS01050
Position (kb) 208
209
210 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 208.288 kb on + strand, within ABZR87_RS01040 at 208.369 kb on + strand, within ABZR87_RS01040 at 208.369 kb on + strand, within ABZR87_RS01040 at 208.369 kb on + strand, within ABZR87_RS01040 at 208.369 kb on + strand, within ABZR87_RS01040 at 208.370 kb on - strand, within ABZR87_RS01040 at 208.370 kb on - strand, within ABZR87_RS01040 at 208.370 kb on - strand, within ABZR87_RS01040 at 208.370 kb on - strand, within ABZR87_RS01040 at 208.429 kb on + strand, within ABZR87_RS01040 at 208.429 kb on + strand, within ABZR87_RS01040 at 208.429 kb on + strand, within ABZR87_RS01040 at 208.430 kb on - strand, within ABZR87_RS01040 at 208.430 kb on - strand, within ABZR87_RS01040 at 208.430 kb on - strand, within ABZR87_RS01040 at 208.453 kb on + strand, within ABZR87_RS01040 at 208.521 kb on + strand, within ABZR87_RS01040 at 208.522 kb on - strand, within ABZR87_RS01040 at 208.726 kb on - strand, within ABZR87_RS01040 at 208.901 kb on + strand at 208.902 kb on - strand at 209.234 kb on - strand, within ABZR87_RS01045 at 209.250 kb on + strand, within ABZR87_RS01045 at 209.250 kb on + strand, within ABZR87_RS01045 at 209.251 kb on - strand, within ABZR87_RS01045 at 209.251 kb on - strand, within ABZR87_RS01045 at 209.251 kb on - strand, within ABZR87_RS01045 at 209.613 kb on + strand at 209.613 kb on + strand at 209.613 kb on + strand at 209.614 kb on - strand at 209.726 kb on + strand at 209.727 kb on - strand at 209.864 kb on + strand, within ABZR87_RS01050 at 209.864 kb on + strand, within ABZR87_RS01050 at 209.864 kb on + strand, within ABZR87_RS01050 at 209.865 kb on - strand, within ABZR87_RS01050 at 209.865 kb on - strand, within ABZR87_RS01050 at 209.865 kb on - strand, within ABZR87_RS01050 at 209.865 kb on - strand, within ABZR87_RS01050 at 209.865 kb on - strand, within ABZR87_RS01050 at 209.865 kb on - strand, within ABZR87_RS01050 at 209.865 kb on - strand, within ABZR87_RS01050 at 209.865 kb on - strand, within ABZR87_RS01050 at 209.969 kb on + strand, within ABZR87_RS01050 at 209.969 kb on + strand, within ABZR87_RS01050 at 209.969 kb on + strand, within ABZR87_RS01050 at 210.153 kb on + strand, within ABZR87_RS01050 at 210.153 kb on + strand, within ABZR87_RS01050 at 210.154 kb on - strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.290 kb on + strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.291 kb on - strand, within ABZR87_RS01050 at 210.296 kb on - strand, within ABZR87_RS01050 at 210.528 kb on + strand, within ABZR87_RS01050 at 210.528 kb on + strand, within ABZR87_RS01050 at 210.528 kb on + strand, within ABZR87_RS01050 at 210.528 kb on + strand, within ABZR87_RS01050 at 210.529 kb on - strand, within ABZR87_RS01050 at 210.529 kb on - strand, within ABZR87_RS01050 at 210.529 kb on - strand, within ABZR87_RS01050 at 210.530 kb on + strand, within ABZR87_RS01050 at 210.530 kb on + strand, within ABZR87_RS01050 at 210.596 kb on + strand, within ABZR87_RS01050
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB remove 208,288 + ABZR87_RS01040 0.34 +0.6 208,369 + ABZR87_RS01040 0.43 -1.7 208,369 + ABZR87_RS01040 0.43 -1.3 208,369 + ABZR87_RS01040 0.43 -0.5 208,369 + ABZR87_RS01040 0.43 +0.9 208,370 - ABZR87_RS01040 0.43 +0.5 208,370 - ABZR87_RS01040 0.43 +0.9 208,370 - ABZR87_RS01040 0.43 +0.2 208,370 - ABZR87_RS01040 0.43 +0.1 208,429 + ABZR87_RS01040 0.50 +0.1 208,429 + ABZR87_RS01040 0.50 -0.7 208,429 + ABZR87_RS01040 0.50 +1.1 208,430 - ABZR87_RS01040 0.50 -1.5 208,430 - ABZR87_RS01040 0.50 -0.6 208,430 - ABZR87_RS01040 0.50 +0.7 208,453 + ABZR87_RS01040 0.53 -0.1 208,521 + ABZR87_RS01040 0.61 -0.0 208,522 - ABZR87_RS01040 0.61 +0.2 208,726 - ABZR87_RS01040 0.84 +1.0 208,901 + -1.1 208,902 - +0.7 209,234 - ABZR87_RS01045 0.47 -0.8 209,250 + ABZR87_RS01045 0.49 +0.2 209,250 + ABZR87_RS01045 0.49 -2.6 209,251 - ABZR87_RS01045 0.49 +0.8 209,251 - ABZR87_RS01045 0.49 -0.9 209,251 - ABZR87_RS01045 0.49 -0.6 209,613 + +1.2 209,613 + -0.8 209,613 + +0.2 209,614 - +0.7 209,726 + +0.2 209,727 - +0.9 209,864 + ABZR87_RS01050 0.20 +0.2 209,864 + ABZR87_RS01050 0.20 +0.4 209,864 + ABZR87_RS01050 0.20 -0.1 209,865 - ABZR87_RS01050 0.20 +1.2 209,865 - ABZR87_RS01050 0.20 -0.2 209,865 - ABZR87_RS01050 0.20 -0.1 209,865 - ABZR87_RS01050 0.20 -1.4 209,865 - ABZR87_RS01050 0.20 -0.9 209,865 - ABZR87_RS01050 0.20 -1.5 209,865 - ABZR87_RS01050 0.20 -0.1 209,865 - ABZR87_RS01050 0.20 +0.3 209,969 + ABZR87_RS01050 0.30 +0.1 209,969 + ABZR87_RS01050 0.30 -1.0 209,969 + ABZR87_RS01050 0.30 -0.3 210,153 + ABZR87_RS01050 0.48 -1.7 210,153 + ABZR87_RS01050 0.48 -0.3 210,154 - ABZR87_RS01050 0.48 -1.8 210,290 + ABZR87_RS01050 0.60 +0.5 210,290 + ABZR87_RS01050 0.60 -1.4 210,290 + ABZR87_RS01050 0.60 +0.3 210,290 + ABZR87_RS01050 0.60 +2.3 210,290 + ABZR87_RS01050 0.60 -1.1 210,290 + ABZR87_RS01050 0.60 -1.4 210,290 + ABZR87_RS01050 0.60 -0.2 210,290 + ABZR87_RS01050 0.60 +1.5 210,290 + ABZR87_RS01050 0.60 +1.3 210,291 - ABZR87_RS01050 0.60 -0.5 210,291 - ABZR87_RS01050 0.60 -0.5 210,291 - ABZR87_RS01050 0.60 -0.2 210,291 - ABZR87_RS01050 0.60 +0.3 210,291 - ABZR87_RS01050 0.60 +0.1 210,291 - ABZR87_RS01050 0.60 -0.3 210,291 - ABZR87_RS01050 0.60 -2.8 210,291 - ABZR87_RS01050 0.60 -1.6 210,291 - ABZR87_RS01050 0.60 +1.0 210,291 - ABZR87_RS01050 0.60 +0.9 210,291 - ABZR87_RS01050 0.60 +0.6 210,291 - ABZR87_RS01050 0.60 +0.4 210,296 - ABZR87_RS01050 0.61 +0.2 210,528 + ABZR87_RS01050 0.83 -2.3 210,528 + ABZR87_RS01050 0.83 +0.6 210,528 + ABZR87_RS01050 0.83 -0.7 210,528 + ABZR87_RS01050 0.83 +0.3 210,529 - ABZR87_RS01050 0.83 -2.2 210,529 - ABZR87_RS01050 0.83 -0.5 210,529 - ABZR87_RS01050 0.83 -0.1 210,530 + ABZR87_RS01050 0.83 -0.8 210,530 + ABZR87_RS01050 0.83 +0.2 210,596 + ABZR87_RS01050 0.89 -2.6
Or see this region's nucleotide sequence