Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00305

Experiment: no_plant_rhizosphere sample 3; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00295 and ABZR87_RS00300 are separated by 16 nucleotidesABZR87_RS00300 and ABZR87_RS00305 are separated by 13 nucleotidesABZR87_RS00305 and ABZR87_RS00310 are separated by 13 nucleotides ABZR87_RS00295: ABZR87_RS00295 - ABC transporter ATP-binding protein, at 60,206 to 60,922 _RS00295 ABZR87_RS00300: ABZR87_RS00300 - ABC transporter ATP-binding protein, at 60,939 to 61,715 _RS00300 ABZR87_RS00305: ABZR87_RS00305 - ABC transporter ATP-binding protein, at 61,729 to 62,856 _RS00305 ABZR87_RS00310: ABZR87_RS00310 - branched-chain amino acid ABC transporter permease, at 62,870 to 63,805 _RS00310 Position (kb) 61 62 63Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 60.732 kb on + strand, within ABZR87_RS00295at 60.733 kb on - strand, within ABZR87_RS00295at 60.879 kb on + strandat 60.911 kb on + strandat 60.912 kb on - strandat 60.922 kb on + strandat 60.922 kb on + strandat 60.922 kb on + strandat 60.923 kb on - strandat 60.961 kb on + strandat 61.244 kb on - strand, within ABZR87_RS00300at 61.244 kb on - strand, within ABZR87_RS00300at 61.244 kb on - strand, within ABZR87_RS00300at 61.264 kb on + strand, within ABZR87_RS00300at 61.264 kb on + strand, within ABZR87_RS00300at 61.265 kb on - strand, within ABZR87_RS00300at 61.273 kb on + strand, within ABZR87_RS00300at 61.273 kb on + strand, within ABZR87_RS00300at 61.274 kb on - strand, within ABZR87_RS00300at 61.291 kb on + strand, within ABZR87_RS00300at 61.291 kb on + strand, within ABZR87_RS00300at 61.291 kb on + strand, within ABZR87_RS00300at 61.292 kb on - strand, within ABZR87_RS00300at 61.504 kb on + strand, within ABZR87_RS00300at 61.505 kb on - strand, within ABZR87_RS00300at 61.546 kb on + strand, within ABZR87_RS00300at 61.546 kb on + strand, within ABZR87_RS00300at 61.546 kb on + strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.547 kb on - strand, within ABZR87_RS00300at 61.610 kb on - strand, within ABZR87_RS00300at 61.734 kb on + strandat 61.735 kb on - strandat 61.812 kb on - strandat 61.974 kb on + strand, within ABZR87_RS00305at 61.975 kb on - strand, within ABZR87_RS00305at 61.984 kb on - strand, within ABZR87_RS00305at 62.012 kb on + strand, within ABZR87_RS00305at 62.013 kb on - strand, within ABZR87_RS00305at 62.261 kb on + strand, within ABZR87_RS00305at 62.262 kb on - strand, within ABZR87_RS00305at 62.262 kb on - strand, within ABZR87_RS00305at 62.262 kb on - strand, within ABZR87_RS00305at 62.262 kb on - strand, within ABZR87_RS00305at 62.264 kb on + strand, within ABZR87_RS00305at 62.264 kb on + strand, within ABZR87_RS00305at 62.264 kb on + strand, within ABZR87_RS00305at 62.264 kb on + strand, within ABZR87_RS00305at 62.264 kb on + strand, within ABZR87_RS00305at 62.264 kb on + strand, within ABZR87_RS00305at 62.264 kb on + strand, within ABZR87_RS00305at 62.265 kb on - strand, within ABZR87_RS00305at 62.265 kb on - strand, within ABZR87_RS00305at 62.265 kb on - strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.267 kb on + strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.268 kb on - strand, within ABZR87_RS00305at 62.273 kb on + strand, within ABZR87_RS00305at 62.273 kb on + strand, within ABZR87_RS00305at 62.273 kb on + strand, within ABZR87_RS00305at 62.274 kb on - strand, within ABZR87_RS00305at 62.274 kb on - strand, within ABZR87_RS00305at 62.453 kb on + strand, within ABZR87_RS00305at 62.453 kb on + strand, within ABZR87_RS00305at 62.454 kb on - strand, within ABZR87_RS00305at 62.454 kb on - strand, within ABZR87_RS00305at 62.627 kb on + strand, within ABZR87_RS00305at 62.627 kb on + strand, within ABZR87_RS00305at 62.627 kb on + strand, within ABZR87_RS00305at 62.627 kb on + strand, within ABZR87_RS00305at 62.627 kb on + strand, within ABZR87_RS00305at 62.628 kb on - strand, within ABZR87_RS00305at 62.628 kb on - strand, within ABZR87_RS00305at 62.628 kb on - strand, within ABZR87_RS00305at 62.628 kb on - strand, within ABZR87_RS00305at 62.643 kb on - strand, within ABZR87_RS00305at 62.643 kb on - strand, within ABZR87_RS00305at 62.643 kb on - strand, within ABZR87_RS00305at 62.654 kb on + strand, within ABZR87_RS00305at 62.655 kb on - strand, within ABZR87_RS00305at 62.655 kb on - strand, within ABZR87_RS00305at 62.717 kb on + strand, within ABZR87_RS00305at 62.718 kb on - strand, within ABZR87_RS00305at 62.718 kb on - strand, within ABZR87_RS00305at 62.718 kb on - strand, within ABZR87_RS00305at 62.718 kb on - strand, within ABZR87_RS00305at 62.751 kb on - strandat 62.751 kb on - strandat 62.751 kb on - strandat 62.810 kb on + strandat 62.811 kb on - strandat 62.811 kb on - strandat 62.871 kb on + strandat 62.998 kb on + strand, within ABZR87_RS00310at 63.123 kb on + strand, within ABZR87_RS00310at 63.123 kb on + strand, within ABZR87_RS00310at 63.123 kb on + strand, within ABZR87_RS00310at 63.123 kb on + strand, within ABZR87_RS00310at 63.123 kb on + strand, within ABZR87_RS00310at 63.123 kb on + strand, within ABZR87_RS00310at 63.123 kb on + strand, within ABZR87_RS00310at 63.123 kb on + strand, within ABZR87_RS00310at 63.123 kb on + strand, within ABZR87_RS00310at 63.123 kb on + strand, within ABZR87_RS00310at 63.124 kb on - strand, within ABZR87_RS00310at 63.124 kb on - strand, within ABZR87_RS00310at 63.124 kb on - strand, within ABZR87_RS00310at 63.124 kb on - strand, within ABZR87_RS00310at 63.141 kb on + strand, within ABZR87_RS00310at 63.142 kb on - strand, within ABZR87_RS00310at 63.550 kb on - strand, within ABZR87_RS00310at 63.550 kb on - strand, within ABZR87_RS00310at 63.550 kb on - strand, within ABZR87_RS00310at 63.550 kb on - strand, within ABZR87_RS00310at 63.550 kb on - strand, within ABZR87_RS00310at 63.627 kb on + strand, within ABZR87_RS00310at 63.716 kb on - strandat 63.716 kb on - strandat 63.716 kb on - strandat 63.720 kb on + strandat 63.720 kb on + strandat 63.720 kb on + strandat 63.721 kb on - strandat 63.721 kb on - strandat 63.732 kb on + strandat 63.754 kb on - strandat 63.794 kb on - strandat 63.794 kb on - strandat 63.798 kb on - strandat 63.799 kb on + strandat 63.800 kb on - strandat 63.800 kb on - strandat 63.800 kb on - strandat 63.800 kb on - strandat 63.802 kb on - strandat 63.821 kb on + strandat 63.822 kb on - strandat 63.822 kb on - strandat 63.838 kb on + strandat 63.838 kb on + strandat 63.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 3; outgrowth in LB
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60,732 + ABZR87_RS00295 0.73 -2.9
60,733 - ABZR87_RS00295 0.74 +1.7
60,879 + -1.7
60,911 + -0.4
60,912 - -0.5
60,922 + -2.0
60,922 + +0.7
60,922 + -0.1
60,923 - +0.3
60,961 + -1.3
61,244 - ABZR87_RS00300 0.39 -1.1
61,244 - ABZR87_RS00300 0.39 -0.2
61,244 - ABZR87_RS00300 0.39 +0.5
61,264 + ABZR87_RS00300 0.42 -2.6
61,264 + ABZR87_RS00300 0.42 -3.7
61,265 - ABZR87_RS00300 0.42 +1.7
61,273 + ABZR87_RS00300 0.43 -1.0
61,273 + ABZR87_RS00300 0.43 +0.4
61,274 - ABZR87_RS00300 0.43 +0.0
61,291 + ABZR87_RS00300 0.45 -0.0
61,291 + ABZR87_RS00300 0.45 -0.1
61,291 + ABZR87_RS00300 0.45 -0.6
61,292 - ABZR87_RS00300 0.45 -0.5
61,504 + ABZR87_RS00300 0.73 +0.4
61,505 - ABZR87_RS00300 0.73 -1.9
61,546 + ABZR87_RS00300 0.78 -2.7
61,546 + ABZR87_RS00300 0.78 -3.2
61,546 + ABZR87_RS00300 0.78 -2.7
61,547 - ABZR87_RS00300 0.78 -1.0
61,547 - ABZR87_RS00300 0.78 +0.4
61,547 - ABZR87_RS00300 0.78 -1.7
61,547 - ABZR87_RS00300 0.78 -1.5
61,547 - ABZR87_RS00300 0.78 -0.4
61,547 - ABZR87_RS00300 0.78 -1.3
61,547 - ABZR87_RS00300 0.78 +0.2
61,547 - ABZR87_RS00300 0.78 -0.7
61,610 - ABZR87_RS00300 0.86 -3.2
61,734 + -1.9
61,735 - -0.9
61,812 - -3.1
61,974 + ABZR87_RS00305 0.22 -3.3
61,975 - ABZR87_RS00305 0.22 -1.1
61,984 - ABZR87_RS00305 0.23 -0.8
62,012 + ABZR87_RS00305 0.25 +0.5
62,013 - ABZR87_RS00305 0.25 -2.3
62,261 + ABZR87_RS00305 0.47 -1.2
62,262 - ABZR87_RS00305 0.47 -1.8
62,262 - ABZR87_RS00305 0.47 -3.2
62,262 - ABZR87_RS00305 0.47 -3.8
62,262 - ABZR87_RS00305 0.47 -2.5
62,264 + ABZR87_RS00305 0.47 -1.7
62,264 + ABZR87_RS00305 0.47 -1.7
62,264 + ABZR87_RS00305 0.47 -1.4
62,264 + ABZR87_RS00305 0.47 -0.6
62,264 + ABZR87_RS00305 0.47 -1.8
62,264 + ABZR87_RS00305 0.47 -0.5
62,264 + ABZR87_RS00305 0.47 -1.3
62,265 - ABZR87_RS00305 0.48 -0.3
62,265 - ABZR87_RS00305 0.48 +0.4
62,265 - ABZR87_RS00305 0.48 -0.7
62,267 + ABZR87_RS00305 0.48 -2.0
62,267 + ABZR87_RS00305 0.48 -2.2
62,267 + ABZR87_RS00305 0.48 +0.1
62,267 + ABZR87_RS00305 0.48 -1.7
62,267 + ABZR87_RS00305 0.48 -0.9
62,267 + ABZR87_RS00305 0.48 -0.6
62,267 + ABZR87_RS00305 0.48 -0.4
62,267 + ABZR87_RS00305 0.48 -0.7
62,267 + ABZR87_RS00305 0.48 -1.9
62,268 - ABZR87_RS00305 0.48 -0.4
62,268 - ABZR87_RS00305 0.48 -1.5
62,268 - ABZR87_RS00305 0.48 -1.9
62,268 - ABZR87_RS00305 0.48 -0.3
62,268 - ABZR87_RS00305 0.48 -1.2
62,268 - ABZR87_RS00305 0.48 +1.7
62,268 - ABZR87_RS00305 0.48 -1.9
62,268 - ABZR87_RS00305 0.48 +0.2
62,268 - ABZR87_RS00305 0.48 -0.6
62,268 - ABZR87_RS00305 0.48 +0.3
62,268 - ABZR87_RS00305 0.48 -3.5
62,268 - ABZR87_RS00305 0.48 -2.6
62,273 + ABZR87_RS00305 0.48 +0.5
62,273 + ABZR87_RS00305 0.48 -1.1
62,273 + ABZR87_RS00305 0.48 -1.1
62,274 - ABZR87_RS00305 0.48 -1.3
62,274 - ABZR87_RS00305 0.48 -0.2
62,453 + ABZR87_RS00305 0.64 -1.6
62,453 + ABZR87_RS00305 0.64 -1.1
62,454 - ABZR87_RS00305 0.64 -1.4
62,454 - ABZR87_RS00305 0.64 -0.6
62,627 + ABZR87_RS00305 0.80 -0.7
62,627 + ABZR87_RS00305 0.80 -2.2
62,627 + ABZR87_RS00305 0.80 -0.0
62,627 + ABZR87_RS00305 0.80 -2.6
62,627 + ABZR87_RS00305 0.80 -0.8
62,628 - ABZR87_RS00305 0.80 -0.5
62,628 - ABZR87_RS00305 0.80 -0.9
62,628 - ABZR87_RS00305 0.80 -0.9
62,628 - ABZR87_RS00305 0.80 -2.1
62,643 - ABZR87_RS00305 0.81 +0.0
62,643 - ABZR87_RS00305 0.81 -3.0
62,643 - ABZR87_RS00305 0.81 -0.8
62,654 + ABZR87_RS00305 0.82 -1.1
62,655 - ABZR87_RS00305 0.82 -0.2
62,655 - ABZR87_RS00305 0.82 +0.7
62,717 + ABZR87_RS00305 0.88 -1.6
62,718 - ABZR87_RS00305 0.88 -2.2
62,718 - ABZR87_RS00305 0.88 -1.2
62,718 - ABZR87_RS00305 0.88 -2.0
62,718 - ABZR87_RS00305 0.88 -1.4
62,751 - -0.0
62,751 - -0.2
62,751 - -1.0
62,810 + +0.6
62,811 - -0.6
62,811 - -1.1
62,871 + -1.2
62,998 + ABZR87_RS00310 0.14 -1.3
63,123 + ABZR87_RS00310 0.27 -1.0
63,123 + ABZR87_RS00310 0.27 +0.1
63,123 + ABZR87_RS00310 0.27 -1.4
63,123 + ABZR87_RS00310 0.27 -3.7
63,123 + ABZR87_RS00310 0.27 -0.6
63,123 + ABZR87_RS00310 0.27 +1.1
63,123 + ABZR87_RS00310 0.27 -1.1
63,123 + ABZR87_RS00310 0.27 -1.5
63,123 + ABZR87_RS00310 0.27 +1.0
63,123 + ABZR87_RS00310 0.27 -1.6
63,124 - ABZR87_RS00310 0.27 -1.8
63,124 - ABZR87_RS00310 0.27 -2.3
63,124 - ABZR87_RS00310 0.27 -0.8
63,124 - ABZR87_RS00310 0.27 -1.2
63,141 + ABZR87_RS00310 0.29 -2.7
63,142 - ABZR87_RS00310 0.29 -0.8
63,550 - ABZR87_RS00310 0.73 -0.4
63,550 - ABZR87_RS00310 0.73 -1.2
63,550 - ABZR87_RS00310 0.73 -1.1
63,550 - ABZR87_RS00310 0.73 -1.5
63,550 - ABZR87_RS00310 0.73 -1.1
63,627 + ABZR87_RS00310 0.81 +1.0
63,716 - -0.1
63,716 - -0.5
63,716 - -1.9
63,720 + -0.1
63,720 + -0.2
63,720 + -2.3
63,721 - -1.6
63,721 - -0.1
63,732 + -1.6
63,754 - -1.1
63,794 - -0.3
63,794 - -0.5
63,798 - -2.7
63,799 + -1.0
63,800 - -3.0
63,800 - +0.4
63,800 - -0.1
63,800 - +0.1
63,802 - +0.6
63,821 + -1.2
63,822 - +0.1
63,822 - -0.8
63,838 + +0.0
63,838 + -1.4
63,839 - -0.0

Or see this region's nucleotide sequence