Experiment: Chloramphenicol 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS21505 and ABZR86_RS21510 are separated by 262 nucleotides ABZR86_RS21510 and ABZR86_RS21515 are separated by 259 nucleotides ABZR86_RS21515 and ABZR86_RS21520 are separated by 64 nucleotides
ABZR86_RS21505: ABZR86_RS21505 - 8-oxo-dGTP diphosphatase, at 267,584 to 268,072
_RS21505
ABZR86_RS21510: ABZR86_RS21510 - hypothetical protein, at 268,335 to 268,673
_RS21510
ABZR86_RS21515: ABZR86_RS21515 - phosphodiester glycosidase family protein, at 268,933 to 269,682
_RS21515
ABZR86_RS21520: ABZR86_RS21520 - penicillin acylase family protein, at 269,747 to 272,167
_RS21520
Position (kb) 268
269
270 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 267.960 kb on + strand, within ABZR86_RS21505 at 267.960 kb on + strand, within ABZR86_RS21505 at 267.960 kb on + strand, within ABZR86_RS21505 at 267.960 kb on + strand, within ABZR86_RS21505 at 267.960 kb on + strand, within ABZR86_RS21505 at 267.961 kb on - strand, within ABZR86_RS21505 at 267.961 kb on - strand, within ABZR86_RS21505 at 268.038 kb on + strand at 268.038 kb on + strand at 268.065 kb on + strand at 268.065 kb on + strand at 268.066 kb on - strand at 268.066 kb on - strand at 268.066 kb on - strand at 268.104 kb on - strand at 268.115 kb on + strand at 268.115 kb on + strand at 268.170 kb on + strand at 268.170 kb on + strand at 268.170 kb on + strand at 268.170 kb on + strand at 268.171 kb on - strand at 268.171 kb on - strand at 268.171 kb on - strand at 268.177 kb on - strand at 268.177 kb on - strand at 268.177 kb on - strand at 268.177 kb on - strand at 268.177 kb on - strand at 268.219 kb on + strand at 268.219 kb on + strand at 268.220 kb on - strand at 268.269 kb on + strand at 268.270 kb on - strand at 268.270 kb on - strand at 268.273 kb on + strand at 268.273 kb on + strand at 268.273 kb on + strand at 268.273 kb on + strand at 268.274 kb on - strand at 268.274 kb on - strand at 268.274 kb on - strand at 268.334 kb on + strand at 268.335 kb on - strand at 268.335 kb on - strand at 268.335 kb on - strand at 268.335 kb on - strand at 268.335 kb on - strand at 268.340 kb on + strand at 268.341 kb on - strand at 268.394 kb on + strand, within ABZR86_RS21510 at 268.437 kb on + strand, within ABZR86_RS21510 at 268.437 kb on + strand, within ABZR86_RS21510 at 268.437 kb on + strand, within ABZR86_RS21510 at 268.438 kb on - strand, within ABZR86_RS21510 at 268.462 kb on - strand, within ABZR86_RS21510 at 268.464 kb on + strand, within ABZR86_RS21510 at 268.464 kb on + strand, within ABZR86_RS21510 at 268.464 kb on + strand, within ABZR86_RS21510 at 268.464 kb on + strand, within ABZR86_RS21510 at 268.465 kb on - strand, within ABZR86_RS21510 at 268.465 kb on - strand, within ABZR86_RS21510 at 268.542 kb on + strand, within ABZR86_RS21510 at 268.543 kb on - strand, within ABZR86_RS21510 at 268.543 kb on - strand, within ABZR86_RS21510 at 268.632 kb on + strand, within ABZR86_RS21510 at 268.633 kb on - strand, within ABZR86_RS21510 at 268.633 kb on - strand, within ABZR86_RS21510 at 268.651 kb on + strand at 268.651 kb on + strand at 268.651 kb on + strand at 268.651 kb on + strand at 268.652 kb on - strand at 268.652 kb on - strand at 268.652 kb on - strand at 268.660 kb on + strand at 268.660 kb on + strand at 268.681 kb on + strand at 268.681 kb on + strand at 268.681 kb on + strand at 268.681 kb on + strand at 268.681 kb on + strand at 268.683 kb on + strand at 268.683 kb on + strand at 268.683 kb on + strand at 268.684 kb on - strand at 268.684 kb on - strand at 268.684 kb on - strand at 268.864 kb on + strand at 268.864 kb on + strand at 268.864 kb on + strand at 268.865 kb on - strand at 268.865 kb on - strand at 268.865 kb on - strand at 268.913 kb on - strand at 269.087 kb on - strand, within ABZR86_RS21515 at 269.164 kb on + strand, within ABZR86_RS21515 at 269.164 kb on + strand, within ABZR86_RS21515 at 269.164 kb on + strand, within ABZR86_RS21515 at 269.165 kb on - strand, within ABZR86_RS21515 at 269.165 kb on - strand, within ABZR86_RS21515 at 269.194 kb on + strand, within ABZR86_RS21515 at 269.194 kb on + strand, within ABZR86_RS21515 at 269.194 kb on + strand, within ABZR86_RS21515 at 269.195 kb on - strand, within ABZR86_RS21515 at 269.195 kb on - strand, within ABZR86_RS21515 at 269.195 kb on - strand, within ABZR86_RS21515 at 269.195 kb on - strand, within ABZR86_RS21515 at 269.293 kb on + strand, within ABZR86_RS21515 at 269.294 kb on - strand, within ABZR86_RS21515 at 269.514 kb on + strand, within ABZR86_RS21515 at 269.515 kb on - strand, within ABZR86_RS21515 at 269.515 kb on - strand, within ABZR86_RS21515 at 269.563 kb on + strand, within ABZR86_RS21515 at 269.564 kb on - strand, within ABZR86_RS21515 at 269.590 kb on + strand, within ABZR86_RS21515 at 269.590 kb on + strand, within ABZR86_RS21515 at 269.591 kb on - strand, within ABZR86_RS21515 at 269.591 kb on - strand, within ABZR86_RS21515 at 269.591 kb on - strand, within ABZR86_RS21515 at 269.641 kb on + strand at 269.706 kb on + strand at 269.706 kb on + strand at 269.707 kb on - strand at 269.707 kb on - strand at 269.707 kb on - strand at 269.890 kb on - strand at 269.890 kb on - strand at 269.890 kb on - strand at 269.901 kb on + strand at 269.902 kb on - strand at 269.966 kb on + strand at 269.966 kb on + strand at 269.967 kb on - strand at 269.967 kb on - strand at 269.967 kb on - strand at 269.978 kb on + strand at 269.979 kb on - strand at 269.979 kb on - strand at 270.155 kb on - strand, within ABZR86_RS21520 at 270.167 kb on + strand, within ABZR86_RS21520 at 270.167 kb on + strand, within ABZR86_RS21520 at 270.168 kb on - strand, within ABZR86_RS21520 at 270.168 kb on - strand, within ABZR86_RS21520 at 270.221 kb on + strand, within ABZR86_RS21520 at 270.221 kb on + strand, within ABZR86_RS21520 at 270.221 kb on + strand, within ABZR86_RS21520 at 270.221 kb on + strand, within ABZR86_RS21520 at 270.221 kb on + strand, within ABZR86_RS21520 at 270.222 kb on - strand, within ABZR86_RS21520 at 270.222 kb on - strand, within ABZR86_RS21520 at 270.222 kb on - strand, within ABZR86_RS21520 at 270.222 kb on - strand, within ABZR86_RS21520 at 270.290 kb on + strand, within ABZR86_RS21520 at 270.290 kb on + strand, within ABZR86_RS21520 at 270.291 kb on - strand, within ABZR86_RS21520 at 270.556 kb on + strand, within ABZR86_RS21520
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.012 mg/ml remove 267,960 + ABZR86_RS21505 0.77 -1.3 267,960 + ABZR86_RS21505 0.77 +0.3 267,960 + ABZR86_RS21505 0.77 -0.1 267,960 + ABZR86_RS21505 0.77 -0.4 267,960 + ABZR86_RS21505 0.77 -1.5 267,961 - ABZR86_RS21505 0.77 -0.2 267,961 - ABZR86_RS21505 0.77 -2.0 268,038 + +0.1 268,038 + +0.2 268,065 + -3.0 268,065 + +0.2 268,066 - +0.4 268,066 - -0.4 268,066 - +1.3 268,104 - -0.4 268,115 + -0.3 268,115 + +1.3 268,170 + -0.6 268,170 + +0.1 268,170 + +0.1 268,170 + -0.3 268,171 - -0.5 268,171 - +0.2 268,171 - -0.7 268,177 - -0.4 268,177 - +0.2 268,177 - +0.6 268,177 - -0.3 268,177 - +0.3 268,219 + -1.8 268,219 + +0.9 268,220 - +0.4 268,269 + +0.5 268,270 - -0.4 268,270 - +0.3 268,273 + +0.3 268,273 + +0.7 268,273 + -0.5 268,273 + +0.4 268,274 - +0.4 268,274 - -1.0 268,274 - -0.3 268,334 + +0.2 268,335 - +0.0 268,335 - +0.4 268,335 - +0.1 268,335 - +1.0 268,335 - +0.2 268,340 + -0.2 268,341 - +0.2 268,394 + ABZR86_RS21510 0.17 +0.0 268,437 + ABZR86_RS21510 0.30 -0.5 268,437 + ABZR86_RS21510 0.30 -1.1 268,437 + ABZR86_RS21510 0.30 +1.3 268,438 - ABZR86_RS21510 0.30 +0.1 268,462 - ABZR86_RS21510 0.37 -0.2 268,464 + ABZR86_RS21510 0.38 -1.1 268,464 + ABZR86_RS21510 0.38 +0.3 268,464 + ABZR86_RS21510 0.38 -0.9 268,464 + ABZR86_RS21510 0.38 +0.3 268,465 - ABZR86_RS21510 0.38 +0.9 268,465 - ABZR86_RS21510 0.38 +0.4 268,542 + ABZR86_RS21510 0.61 +0.1 268,543 - ABZR86_RS21510 0.61 +0.4 268,543 - ABZR86_RS21510 0.61 +0.7 268,632 + ABZR86_RS21510 0.88 +1.1 268,633 - ABZR86_RS21510 0.88 -1.3 268,633 - ABZR86_RS21510 0.88 +1.1 268,651 + -1.6 268,651 + +0.2 268,651 + -1.5 268,651 + -0.5 268,652 - +0.3 268,652 - +1.4 268,652 - +0.8 268,660 + +1.0 268,660 + -0.2 268,681 + -0.3 268,681 + +1.0 268,681 + -0.1 268,681 + -0.2 268,681 + -0.0 268,683 + +0.3 268,683 + -0.0 268,683 + +0.1 268,684 - -0.1 268,684 - -1.7 268,684 - -0.5 268,864 + +0.0 268,864 + -0.2 268,864 + -0.8 268,865 - +0.2 268,865 - -0.5 268,865 - -0.3 268,913 - -0.1 269,087 - ABZR86_RS21515 0.21 -1.0 269,164 + ABZR86_RS21515 0.31 -1.3 269,164 + ABZR86_RS21515 0.31 -0.5 269,164 + ABZR86_RS21515 0.31 -0.1 269,165 - ABZR86_RS21515 0.31 -0.5 269,165 - ABZR86_RS21515 0.31 -0.1 269,194 + ABZR86_RS21515 0.35 -0.2 269,194 + ABZR86_RS21515 0.35 -1.9 269,194 + ABZR86_RS21515 0.35 -0.3 269,195 - ABZR86_RS21515 0.35 +0.7 269,195 - ABZR86_RS21515 0.35 -0.5 269,195 - ABZR86_RS21515 0.35 +0.4 269,195 - ABZR86_RS21515 0.35 -0.4 269,293 + ABZR86_RS21515 0.48 +1.0 269,294 - ABZR86_RS21515 0.48 -1.5 269,514 + ABZR86_RS21515 0.77 +0.2 269,515 - ABZR86_RS21515 0.78 +0.3 269,515 - ABZR86_RS21515 0.78 -0.7 269,563 + ABZR86_RS21515 0.84 -0.5 269,564 - ABZR86_RS21515 0.84 +0.9 269,590 + ABZR86_RS21515 0.88 -0.5 269,590 + ABZR86_RS21515 0.88 +0.4 269,591 - ABZR86_RS21515 0.88 +0.1 269,591 - ABZR86_RS21515 0.88 +0.7 269,591 - ABZR86_RS21515 0.88 +0.5 269,641 + -0.0 269,706 + -1.1 269,706 + -1.3 269,707 - -0.4 269,707 - +0.1 269,707 - -0.1 269,890 - +0.8 269,890 - +0.8 269,890 - +0.3 269,901 + -0.5 269,902 - -1.2 269,966 + +0.2 269,966 + +0.1 269,967 - -0.9 269,967 - -0.5 269,967 - -0.9 269,978 + +0.0 269,979 - +0.6 269,979 - -0.8 270,155 - ABZR86_RS21520 0.17 +0.7 270,167 + ABZR86_RS21520 0.17 -0.1 270,167 + ABZR86_RS21520 0.17 +1.2 270,168 - ABZR86_RS21520 0.17 -0.6 270,168 - ABZR86_RS21520 0.17 +0.2 270,221 + ABZR86_RS21520 0.20 -0.7 270,221 + ABZR86_RS21520 0.20 -0.7 270,221 + ABZR86_RS21520 0.20 +0.1 270,221 + ABZR86_RS21520 0.20 -0.1 270,221 + ABZR86_RS21520 0.20 +1.0 270,222 - ABZR86_RS21520 0.20 -0.4 270,222 - ABZR86_RS21520 0.20 +0.2 270,222 - ABZR86_RS21520 0.20 -0.1 270,222 - ABZR86_RS21520 0.20 +0.5 270,290 + ABZR86_RS21520 0.22 +0.2 270,290 + ABZR86_RS21520 0.22 +0.3 270,291 - ABZR86_RS21520 0.22 +0.1 270,556 + ABZR86_RS21520 0.33 -0.1
Or see this region's nucleotide sequence