Experiment: Chloramphenicol 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20990 and ABZR86_RS20995 are separated by 5 nucleotides ABZR86_RS20995 and ABZR86_RS21000 are separated by 156 nucleotides ABZR86_RS21000 and ABZR86_RS21005 are separated by 190 nucleotides
ABZR86_RS20990: ABZR86_RS20990 - hypothetical protein, at 171,540 to 172,115
_RS20990
ABZR86_RS20995: ABZR86_RS20995 - TetR/AcrR family transcriptional regulator, at 172,121 to 172,750
_RS20995
ABZR86_RS21000: ABZR86_RS21000 - hypothetical protein, at 172,907 to 173,395
_RS21000
ABZR86_RS21005: ABZR86_RS21005 - omptin family outer membrane protease, at 173,586 to 174,575
_RS21005
Position (kb) 172
173
174 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 171.992 kb on - strand, within ABZR86_RS20990 at 171.992 kb on - strand, within ABZR86_RS20990 at 172.140 kb on + strand at 172.261 kb on - strand, within ABZR86_RS20995 at 172.337 kb on + strand, within ABZR86_RS20995 at 172.346 kb on + strand, within ABZR86_RS20995 at 172.347 kb on - strand, within ABZR86_RS20995 at 172.347 kb on - strand, within ABZR86_RS20995 at 172.347 kb on - strand, within ABZR86_RS20995 at 172.347 kb on - strand, within ABZR86_RS20995 at 172.599 kb on + strand, within ABZR86_RS20995 at 172.660 kb on - strand, within ABZR86_RS20995 at 172.812 kb on + strand at 172.980 kb on - strand, within ABZR86_RS21000 at 173.252 kb on + strand, within ABZR86_RS21000 at 173.253 kb on - strand, within ABZR86_RS21000 at 173.327 kb on + strand, within ABZR86_RS21000 at 173.327 kb on + strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.366 kb on + strand at 173.367 kb on - strand at 173.367 kb on - strand at 173.367 kb on - strand at 173.393 kb on + strand at 173.479 kb on + strand at 173.578 kb on + strand at 173.578 kb on + strand at 173.579 kb on - strand at 173.591 kb on + strand at 173.591 kb on + strand at 173.751 kb on + strand, within ABZR86_RS21005 at 173.751 kb on + strand, within ABZR86_RS21005 at 173.751 kb on + strand, within ABZR86_RS21005 at 173.751 kb on + strand, within ABZR86_RS21005 at 173.752 kb on - strand, within ABZR86_RS21005 at 173.752 kb on - strand, within ABZR86_RS21005 at 173.752 kb on - strand, within ABZR86_RS21005 at 173.757 kb on + strand, within ABZR86_RS21005 at 173.757 kb on + strand, within ABZR86_RS21005 at 173.839 kb on - strand, within ABZR86_RS21005 at 173.913 kb on + strand, within ABZR86_RS21005 at 174.105 kb on + strand, within ABZR86_RS21005 at 174.105 kb on + strand, within ABZR86_RS21005 at 174.105 kb on + strand, within ABZR86_RS21005 at 174.105 kb on + strand, within ABZR86_RS21005 at 174.106 kb on - strand, within ABZR86_RS21005 at 174.106 kb on - strand, within ABZR86_RS21005 at 174.106 kb on - strand, within ABZR86_RS21005 at 174.106 kb on - strand, within ABZR86_RS21005 at 174.106 kb on - strand, within ABZR86_RS21005 at 174.106 kb on - strand, within ABZR86_RS21005 at 174.107 kb on + strand, within ABZR86_RS21005 at 174.107 kb on + strand, within ABZR86_RS21005 at 174.107 kb on + strand, within ABZR86_RS21005 at 174.107 kb on + strand, within ABZR86_RS21005 at 174.108 kb on - strand, within ABZR86_RS21005 at 174.108 kb on - strand, within ABZR86_RS21005 at 174.108 kb on - strand, within ABZR86_RS21005 at 174.111 kb on + strand, within ABZR86_RS21005 at 174.111 kb on + strand, within ABZR86_RS21005 at 174.112 kb on - strand, within ABZR86_RS21005 at 174.112 kb on - strand, within ABZR86_RS21005 at 174.182 kb on + strand, within ABZR86_RS21005 at 174.182 kb on + strand, within ABZR86_RS21005 at 174.183 kb on - strand, within ABZR86_RS21005 at 174.200 kb on + strand, within ABZR86_RS21005 at 174.200 kb on + strand, within ABZR86_RS21005 at 174.200 kb on + strand, within ABZR86_RS21005 at 174.200 kb on + strand, within ABZR86_RS21005 at 174.201 kb on - strand, within ABZR86_RS21005 at 174.201 kb on - strand, within ABZR86_RS21005 at 174.201 kb on - strand, within ABZR86_RS21005 at 174.204 kb on + strand, within ABZR86_RS21005 at 174.205 kb on - strand, within ABZR86_RS21005 at 174.205 kb on - strand, within ABZR86_RS21005 at 174.228 kb on + strand, within ABZR86_RS21005 at 174.250 kb on - strand, within ABZR86_RS21005 at 174.273 kb on + strand, within ABZR86_RS21005 at 174.273 kb on + strand, within ABZR86_RS21005 at 174.273 kb on + strand, within ABZR86_RS21005 at 174.274 kb on - strand, within ABZR86_RS21005 at 174.274 kb on - strand, within ABZR86_RS21005 at 174.274 kb on - strand, within ABZR86_RS21005
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.012 mg/ml remove 171,992 - ABZR86_RS20990 0.78 +0.7 171,992 - ABZR86_RS20990 0.78 +0.2 172,140 + -0.4 172,261 - ABZR86_RS20995 0.22 +0.4 172,337 + ABZR86_RS20995 0.34 -0.4 172,346 + ABZR86_RS20995 0.36 -0.5 172,347 - ABZR86_RS20995 0.36 -0.2 172,347 - ABZR86_RS20995 0.36 -1.5 172,347 - ABZR86_RS20995 0.36 +0.1 172,347 - ABZR86_RS20995 0.36 -0.0 172,599 + ABZR86_RS20995 0.76 +0.1 172,660 - ABZR86_RS20995 0.86 -0.6 172,812 + +1.7 172,980 - ABZR86_RS21000 0.15 +0.4 173,252 + ABZR86_RS21000 0.71 -0.5 173,253 - ABZR86_RS21000 0.71 +0.4 173,327 + ABZR86_RS21000 0.86 -0.4 173,327 + ABZR86_RS21000 0.86 +0.8 173,328 - ABZR86_RS21000 0.86 -2.2 173,328 - ABZR86_RS21000 0.86 -0.3 173,328 - ABZR86_RS21000 0.86 -0.4 173,328 - ABZR86_RS21000 0.86 +0.5 173,328 - ABZR86_RS21000 0.86 -2.1 173,328 - ABZR86_RS21000 0.86 +0.3 173,366 + -0.3 173,367 - +0.5 173,367 - -0.0 173,367 - -0.7 173,393 + +0.6 173,479 + -0.2 173,578 + -0.4 173,578 + +0.2 173,579 - +0.5 173,591 + +0.1 173,591 + -0.2 173,751 + ABZR86_RS21005 0.17 -0.0 173,751 + ABZR86_RS21005 0.17 +0.0 173,751 + ABZR86_RS21005 0.17 +0.5 173,751 + ABZR86_RS21005 0.17 +0.4 173,752 - ABZR86_RS21005 0.17 -0.0 173,752 - ABZR86_RS21005 0.17 +0.3 173,752 - ABZR86_RS21005 0.17 -0.9 173,757 + ABZR86_RS21005 0.17 +0.2 173,757 + ABZR86_RS21005 0.17 +1.0 173,839 - ABZR86_RS21005 0.26 -0.0 173,913 + ABZR86_RS21005 0.33 -0.7 174,105 + ABZR86_RS21005 0.52 -0.2 174,105 + ABZR86_RS21005 0.52 +0.2 174,105 + ABZR86_RS21005 0.52 +0.4 174,105 + ABZR86_RS21005 0.52 -0.4 174,106 - ABZR86_RS21005 0.53 +0.5 174,106 - ABZR86_RS21005 0.53 -0.2 174,106 - ABZR86_RS21005 0.53 +0.3 174,106 - ABZR86_RS21005 0.53 -2.0 174,106 - ABZR86_RS21005 0.53 -1.2 174,106 - ABZR86_RS21005 0.53 -0.4 174,107 + ABZR86_RS21005 0.53 +0.5 174,107 + ABZR86_RS21005 0.53 +0.8 174,107 + ABZR86_RS21005 0.53 +0.3 174,107 + ABZR86_RS21005 0.53 +1.4 174,108 - ABZR86_RS21005 0.53 -1.0 174,108 - ABZR86_RS21005 0.53 -0.0 174,108 - ABZR86_RS21005 0.53 -0.8 174,111 + ABZR86_RS21005 0.53 +0.2 174,111 + ABZR86_RS21005 0.53 -0.7 174,112 - ABZR86_RS21005 0.53 -1.2 174,112 - ABZR86_RS21005 0.53 -0.1 174,182 + ABZR86_RS21005 0.60 -0.1 174,182 + ABZR86_RS21005 0.60 -0.1 174,183 - ABZR86_RS21005 0.60 +0.5 174,200 + ABZR86_RS21005 0.62 +1.0 174,200 + ABZR86_RS21005 0.62 -0.6 174,200 + ABZR86_RS21005 0.62 +0.0 174,200 + ABZR86_RS21005 0.62 +0.4 174,201 - ABZR86_RS21005 0.62 +0.8 174,201 - ABZR86_RS21005 0.62 +0.4 174,201 - ABZR86_RS21005 0.62 -1.6 174,204 + ABZR86_RS21005 0.62 -0.0 174,205 - ABZR86_RS21005 0.63 +0.2 174,205 - ABZR86_RS21005 0.63 -0.2 174,228 + ABZR86_RS21005 0.65 +2.8 174,250 - ABZR86_RS21005 0.67 +0.2 174,273 + ABZR86_RS21005 0.69 -0.1 174,273 + ABZR86_RS21005 0.69 +0.4 174,273 + ABZR86_RS21005 0.69 -0.8 174,274 - ABZR86_RS21005 0.69 +0.0 174,274 - ABZR86_RS21005 0.69 -0.4 174,274 - ABZR86_RS21005 0.69 -0.1
Or see this region's nucleotide sequence