Experiment: Chloramphenicol 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20985 and ABZR86_RS20990 are separated by 188 nucleotides ABZR86_RS20990 and ABZR86_RS20995 are separated by 5 nucleotides ABZR86_RS20995 and ABZR86_RS21000 are separated by 156 nucleotides ABZR86_RS21000 and ABZR86_RS21005 are separated by 190 nucleotides
ABZR86_RS20985: ABZR86_RS20985 - bifunctional diguanylate cyclase/phosphodiesterase, at 168,418 to 171,351
_RS20985
ABZR86_RS20990: ABZR86_RS20990 - hypothetical protein, at 171,540 to 172,115
_RS20990
ABZR86_RS20995: ABZR86_RS20995 - TetR/AcrR family transcriptional regulator, at 172,121 to 172,750
_RS20995
ABZR86_RS21000: ABZR86_RS21000 - hypothetical protein, at 172,907 to 173,395
_RS21000
ABZR86_RS21005: ABZR86_RS21005 - omptin family outer membrane protease, at 173,586 to 174,575
_RS21005
Position (kb) 172
173 Strain fitness (log2 ratio) -2
-1
0
1 at 171.213 kb on + strand at 171.495 kb on - strand at 171.545 kb on + strand at 171.546 kb on - strand at 171.672 kb on + strand, within ABZR86_RS20990 at 171.673 kb on - strand, within ABZR86_RS20990 at 171.673 kb on - strand, within ABZR86_RS20990 at 171.684 kb on + strand, within ABZR86_RS20990 at 171.743 kb on - strand, within ABZR86_RS20990 at 171.805 kb on + strand, within ABZR86_RS20990 at 171.805 kb on + strand, within ABZR86_RS20990 at 171.805 kb on + strand, within ABZR86_RS20990 at 171.805 kb on + strand, within ABZR86_RS20990 at 171.805 kb on + strand, within ABZR86_RS20990 at 171.806 kb on - strand, within ABZR86_RS20990 at 171.806 kb on - strand, within ABZR86_RS20990 at 171.889 kb on + strand, within ABZR86_RS20990 at 171.890 kb on - strand, within ABZR86_RS20990 at 171.890 kb on - strand, within ABZR86_RS20990 at 171.890 kb on - strand, within ABZR86_RS20990 at 171.890 kb on - strand, within ABZR86_RS20990 at 171.992 kb on - strand, within ABZR86_RS20990 at 171.992 kb on - strand, within ABZR86_RS20990 at 172.140 kb on + strand at 172.261 kb on - strand, within ABZR86_RS20995 at 172.337 kb on + strand, within ABZR86_RS20995 at 172.346 kb on + strand, within ABZR86_RS20995 at 172.347 kb on - strand, within ABZR86_RS20995 at 172.347 kb on - strand, within ABZR86_RS20995 at 172.347 kb on - strand, within ABZR86_RS20995 at 172.347 kb on - strand, within ABZR86_RS20995 at 172.599 kb on + strand, within ABZR86_RS20995 at 172.660 kb on - strand, within ABZR86_RS20995 at 172.812 kb on + strand at 172.980 kb on - strand, within ABZR86_RS21000 at 173.252 kb on + strand, within ABZR86_RS21000 at 173.253 kb on - strand, within ABZR86_RS21000 at 173.327 kb on + strand, within ABZR86_RS21000 at 173.327 kb on + strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.328 kb on - strand, within ABZR86_RS21000 at 173.366 kb on + strand at 173.367 kb on - strand at 173.367 kb on - strand at 173.367 kb on - strand at 173.393 kb on + strand at 173.479 kb on + strand at 173.578 kb on + strand at 173.578 kb on + strand at 173.579 kb on - strand at 173.591 kb on + strand at 173.591 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.012 mg/ml remove 171,213 + -0.2 171,495 - -1.0 171,545 + -1.7 171,546 - -1.6 171,672 + ABZR86_RS20990 0.23 +0.2 171,673 - ABZR86_RS20990 0.23 +0.0 171,673 - ABZR86_RS20990 0.23 -0.2 171,684 + ABZR86_RS20990 0.25 -0.6 171,743 - ABZR86_RS20990 0.35 -1.0 171,805 + ABZR86_RS20990 0.46 +0.1 171,805 + ABZR86_RS20990 0.46 -1.1 171,805 + ABZR86_RS20990 0.46 -0.3 171,805 + ABZR86_RS20990 0.46 -0.5 171,805 + ABZR86_RS20990 0.46 +0.4 171,806 - ABZR86_RS20990 0.46 -1.1 171,806 - ABZR86_RS20990 0.46 -0.7 171,889 + ABZR86_RS20990 0.61 -0.1 171,890 - ABZR86_RS20990 0.61 +0.0 171,890 - ABZR86_RS20990 0.61 -0.0 171,890 - ABZR86_RS20990 0.61 -0.8 171,890 - ABZR86_RS20990 0.61 +0.6 171,992 - ABZR86_RS20990 0.78 +0.7 171,992 - ABZR86_RS20990 0.78 +0.2 172,140 + -0.4 172,261 - ABZR86_RS20995 0.22 +0.4 172,337 + ABZR86_RS20995 0.34 -0.4 172,346 + ABZR86_RS20995 0.36 -0.5 172,347 - ABZR86_RS20995 0.36 -0.2 172,347 - ABZR86_RS20995 0.36 -1.5 172,347 - ABZR86_RS20995 0.36 +0.1 172,347 - ABZR86_RS20995 0.36 -0.0 172,599 + ABZR86_RS20995 0.76 +0.1 172,660 - ABZR86_RS20995 0.86 -0.6 172,812 + +1.7 172,980 - ABZR86_RS21000 0.15 +0.4 173,252 + ABZR86_RS21000 0.71 -0.5 173,253 - ABZR86_RS21000 0.71 +0.4 173,327 + ABZR86_RS21000 0.86 -0.4 173,327 + ABZR86_RS21000 0.86 +0.8 173,328 - ABZR86_RS21000 0.86 -2.2 173,328 - ABZR86_RS21000 0.86 -0.3 173,328 - ABZR86_RS21000 0.86 -0.4 173,328 - ABZR86_RS21000 0.86 +0.5 173,328 - ABZR86_RS21000 0.86 -2.1 173,328 - ABZR86_RS21000 0.86 +0.3 173,366 + -0.3 173,367 - +0.5 173,367 - -0.0 173,367 - -0.7 173,393 + +0.6 173,479 + -0.2 173,578 + -0.4 173,578 + +0.2 173,579 - +0.5 173,591 + +0.1 173,591 + -0.2
Or see this region's nucleotide sequence