Experiment: Chloramphenicol 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS19130 and ABZR86_RS19135 are separated by 101 nucleotides ABZR86_RS19135 and ABZR86_RS19140 are separated by 147 nucleotides ABZR86_RS19140 and ABZR86_RS19145 are separated by 58 nucleotides
ABZR86_RS19130: ABZR86_RS19130 - outer membrane beta-barrel protein, at 270,818 to 271,510
_RS19130
ABZR86_RS19135: ABZR86_RS19135 - hypothetical protein, at 271,612 to 271,872
_RS19135
ABZR86_RS19140: ABZR86_RS19140 - outer membrane beta-barrel protein, at 272,020 to 272,745
_RS19140
ABZR86_RS19145: ABZR86_RS19145 - glucan ABC transporter ATP-binding protein/ permease, at 272,804 to 274,552
_RS19145
Position (kb) 272
273 Strain fitness (log2 ratio) -2
-1
0
1
2 at 271.177 kb on - strand, within ABZR86_RS19130 at 271.177 kb on - strand, within ABZR86_RS19130 at 271.177 kb on - strand, within ABZR86_RS19130 at 271.220 kb on + strand, within ABZR86_RS19130 at 271.221 kb on - strand, within ABZR86_RS19130 at 271.241 kb on + strand, within ABZR86_RS19130 at 271.241 kb on + strand, within ABZR86_RS19130 at 271.241 kb on + strand, within ABZR86_RS19130 at 271.241 kb on + strand, within ABZR86_RS19130 at 271.241 kb on + strand, within ABZR86_RS19130 at 271.241 kb on + strand, within ABZR86_RS19130 at 271.241 kb on + strand, within ABZR86_RS19130 at 271.241 kb on + strand, within ABZR86_RS19130 at 271.242 kb on - strand, within ABZR86_RS19130 at 271.242 kb on - strand, within ABZR86_RS19130 at 271.242 kb on - strand, within ABZR86_RS19130 at 271.242 kb on - strand, within ABZR86_RS19130 at 271.242 kb on - strand, within ABZR86_RS19130 at 271.242 kb on - strand, within ABZR86_RS19130 at 271.242 kb on - strand, within ABZR86_RS19130 at 271.242 kb on - strand, within ABZR86_RS19130 at 271.242 kb on - strand, within ABZR86_RS19130 at 271.242 kb on - strand, within ABZR86_RS19130 at 271.242 kb on - strand, within ABZR86_RS19130 at 271.242 kb on - strand, within ABZR86_RS19130 at 271.333 kb on + strand, within ABZR86_RS19130 at 271.333 kb on + strand, within ABZR86_RS19130 at 271.334 kb on - strand, within ABZR86_RS19130 at 271.334 kb on - strand, within ABZR86_RS19130 at 271.334 kb on - strand, within ABZR86_RS19130 at 271.336 kb on + strand, within ABZR86_RS19130 at 271.337 kb on - strand, within ABZR86_RS19130 at 271.337 kb on - strand, within ABZR86_RS19130 at 271.370 kb on + strand, within ABZR86_RS19130 at 271.384 kb on + strand, within ABZR86_RS19130 at 271.385 kb on - strand, within ABZR86_RS19130 at 271.465 kb on - strand at 271.496 kb on + strand at 271.508 kb on + strand at 271.508 kb on + strand at 271.509 kb on - strand at 271.509 kb on - strand at 271.516 kb on + strand at 271.516 kb on + strand at 271.517 kb on - strand at 271.728 kb on - strand, within ABZR86_RS19135 at 271.878 kb on + strand at 271.878 kb on + strand at 271.900 kb on + strand at 271.924 kb on - strand at 272.103 kb on - strand, within ABZR86_RS19140 at 272.128 kb on + strand, within ABZR86_RS19140 at 272.128 kb on + strand, within ABZR86_RS19140 at 272.128 kb on + strand, within ABZR86_RS19140 at 272.129 kb on - strand, within ABZR86_RS19140 at 272.129 kb on - strand, within ABZR86_RS19140 at 272.161 kb on + strand, within ABZR86_RS19140 at 272.287 kb on + strand, within ABZR86_RS19140 at 272.425 kb on + strand, within ABZR86_RS19140 at 272.446 kb on + strand, within ABZR86_RS19140 at 272.446 kb on + strand, within ABZR86_RS19140 at 272.608 kb on + strand, within ABZR86_RS19140 at 272.608 kb on + strand, within ABZR86_RS19140 at 272.720 kb on + strand at 272.720 kb on + strand at 272.805 kb on + strand at 272.806 kb on - strand at 272.806 kb on - strand at 272.807 kb on + strand at 272.807 kb on + strand at 272.808 kb on - strand at 272.808 kb on - strand at 272.808 kb on - strand at 273.166 kb on - strand, within ABZR86_RS19145 at 273.188 kb on - strand, within ABZR86_RS19145 at 273.402 kb on + strand, within ABZR86_RS19145 at 273.662 kb on - strand, within ABZR86_RS19145
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.012 mg/ml remove 271,177 - ABZR86_RS19130 0.52 -0.0 271,177 - ABZR86_RS19130 0.52 +0.3 271,177 - ABZR86_RS19130 0.52 -1.4 271,220 + ABZR86_RS19130 0.58 +0.0 271,221 - ABZR86_RS19130 0.58 +0.2 271,241 + ABZR86_RS19130 0.61 -0.0 271,241 + ABZR86_RS19130 0.61 +0.6 271,241 + ABZR86_RS19130 0.61 -0.1 271,241 + ABZR86_RS19130 0.61 -1.2 271,241 + ABZR86_RS19130 0.61 -0.3 271,241 + ABZR86_RS19130 0.61 -0.6 271,241 + ABZR86_RS19130 0.61 +0.8 271,241 + ABZR86_RS19130 0.61 +0.1 271,242 - ABZR86_RS19130 0.61 +0.3 271,242 - ABZR86_RS19130 0.61 -0.6 271,242 - ABZR86_RS19130 0.61 +0.6 271,242 - ABZR86_RS19130 0.61 -0.6 271,242 - ABZR86_RS19130 0.61 +1.1 271,242 - ABZR86_RS19130 0.61 +0.1 271,242 - ABZR86_RS19130 0.61 +1.9 271,242 - ABZR86_RS19130 0.61 +0.2 271,242 - ABZR86_RS19130 0.61 +0.6 271,242 - ABZR86_RS19130 0.61 -0.9 271,242 - ABZR86_RS19130 0.61 -0.1 271,242 - ABZR86_RS19130 0.61 -0.7 271,333 + ABZR86_RS19130 0.74 -0.5 271,333 + ABZR86_RS19130 0.74 +0.1 271,334 - ABZR86_RS19130 0.74 -0.2 271,334 - ABZR86_RS19130 0.74 +0.2 271,334 - ABZR86_RS19130 0.74 -0.3 271,336 + ABZR86_RS19130 0.75 +0.1 271,337 - ABZR86_RS19130 0.75 +0.8 271,337 - ABZR86_RS19130 0.75 +1.2 271,370 + ABZR86_RS19130 0.80 -0.3 271,384 + ABZR86_RS19130 0.82 +0.4 271,385 - ABZR86_RS19130 0.82 -0.2 271,465 - +0.1 271,496 + -0.1 271,508 + -0.5 271,508 + +0.2 271,509 - -0.3 271,509 - -0.5 271,516 + -0.3 271,516 + +0.0 271,517 - +1.2 271,728 - ABZR86_RS19135 0.44 -0.1 271,878 + -0.5 271,878 + -0.4 271,900 + -0.9 271,924 - +0.6 272,103 - ABZR86_RS19140 0.11 -0.8 272,128 + ABZR86_RS19140 0.15 -0.7 272,128 + ABZR86_RS19140 0.15 +0.1 272,128 + ABZR86_RS19140 0.15 +0.3 272,129 - ABZR86_RS19140 0.15 +0.2 272,129 - ABZR86_RS19140 0.15 -0.3 272,161 + ABZR86_RS19140 0.19 -2.5 272,287 + ABZR86_RS19140 0.37 -0.0 272,425 + ABZR86_RS19140 0.56 -0.8 272,446 + ABZR86_RS19140 0.59 -0.3 272,446 + ABZR86_RS19140 0.59 +1.2 272,608 + ABZR86_RS19140 0.81 +0.1 272,608 + ABZR86_RS19140 0.81 +1.5 272,720 + -0.8 272,720 + -1.1 272,805 + -0.6 272,806 - -1.2 272,806 - -0.8 272,807 + -1.2 272,807 + +0.2 272,808 - -2.2 272,808 - +0.6 272,808 - -0.4 273,166 - ABZR86_RS19145 0.21 -0.1 273,188 - ABZR86_RS19145 0.22 +0.4 273,402 + ABZR86_RS19145 0.34 +0.0 273,662 - ABZR86_RS19145 0.49 +0.4
Or see this region's nucleotide sequence