Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS18130

Experiment: Chloramphenicol 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS18125 and ABZR86_RS18130 are separated by 190 nucleotidesABZR86_RS18130 and ABZR86_RS18135 are separated by 40 nucleotidesABZR86_RS18135 and ABZR86_RS18140 are separated by 200 nucleotides ABZR86_RS18125: ABZR86_RS18125 - zinc-binding alcohol dehydrogenase family protein, at 39,578 to 40,591 _RS18125 ABZR86_RS18130: ABZR86_RS18130 - FAD/NAD(P)-binding protein, at 40,782 to 42,149 _RS18130 ABZR86_RS18135: ABZR86_RS18135 - cysteine dioxygenase family protein, at 42,190 to 42,759 _RS18135 ABZR86_RS18140: ABZR86_RS18140 - hypothetical protein, at 42,960 to 43,247 _RS18140 Position (kb) 40 41 42 43Strain fitness (log2 ratio) -2 -1 0 1at 39.787 kb on - strand, within ABZR86_RS18125at 39.836 kb on + strand, within ABZR86_RS18125at 39.836 kb on + strand, within ABZR86_RS18125at 39.837 kb on - strand, within ABZR86_RS18125at 39.839 kb on + strand, within ABZR86_RS18125at 39.839 kb on + strand, within ABZR86_RS18125at 39.840 kb on - strand, within ABZR86_RS18125at 40.232 kb on + strand, within ABZR86_RS18125at 40.232 kb on + strand, within ABZR86_RS18125at 40.232 kb on + strand, within ABZR86_RS18125at 40.232 kb on + strand, within ABZR86_RS18125at 40.232 kb on + strand, within ABZR86_RS18125at 40.232 kb on + strand, within ABZR86_RS18125at 40.233 kb on - strand, within ABZR86_RS18125at 40.233 kb on - strand, within ABZR86_RS18125at 40.233 kb on - strand, within ABZR86_RS18125at 40.233 kb on - strand, within ABZR86_RS18125at 40.233 kb on - strand, within ABZR86_RS18125at 40.233 kb on - strand, within ABZR86_RS18125at 40.233 kb on - strand, within ABZR86_RS18125at 40.246 kb on + strand, within ABZR86_RS18125at 40.247 kb on - strand, within ABZR86_RS18125at 40.247 kb on - strand, within ABZR86_RS18125at 40.247 kb on - strand, within ABZR86_RS18125at 40.688 kb on - strandat 40.688 kb on - strandat 40.688 kb on - strandat 40.689 kb on + strandat 40.689 kb on + strandat 40.690 kb on - strandat 40.690 kb on - strandat 40.690 kb on - strandat 40.690 kb on - strandat 40.767 kb on + strandat 40.768 kb on - strandat 40.768 kb on - strandat 41.632 kb on + strand, within ABZR86_RS18130at 41.632 kb on + strand, within ABZR86_RS18130at 41.633 kb on - strand, within ABZR86_RS18130at 41.633 kb on - strand, within ABZR86_RS18130at 41.858 kb on - strand, within ABZR86_RS18130at 41.858 kb on - strand, within ABZR86_RS18130at 42.145 kb on + strandat 42.145 kb on + strandat 42.145 kb on + strandat 42.145 kb on + strandat 42.145 kb on + strandat 42.146 kb on - strandat 42.146 kb on - strandat 42.266 kb on + strand, within ABZR86_RS18135at 42.266 kb on + strand, within ABZR86_RS18135at 42.267 kb on - strand, within ABZR86_RS18135at 42.267 kb on - strand, within ABZR86_RS18135at 42.267 kb on - strand, within ABZR86_RS18135at 42.276 kb on - strand, within ABZR86_RS18135at 42.276 kb on - strand, within ABZR86_RS18135at 42.276 kb on - strand, within ABZR86_RS18135at 42.310 kb on - strand, within ABZR86_RS18135at 42.831 kb on - strandat 42.864 kb on + strandat 42.864 kb on + strandat 42.864 kb on + strandat 42.864 kb on + strandat 42.864 kb on + strandat 42.865 kb on - strandat 42.865 kb on - strandat 42.865 kb on - strandat 42.865 kb on - strandat 42.874 kb on - strandat 42.874 kb on - strandat 42.970 kb on + strandat 42.970 kb on + strandat 43.063 kb on + strand, within ABZR86_RS18140

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.012 mg/ml
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39,787 - ABZR86_RS18125 0.21 -0.5
39,836 + ABZR86_RS18125 0.25 -0.0
39,836 + ABZR86_RS18125 0.25 +0.2
39,837 - ABZR86_RS18125 0.26 +0.4
39,839 + ABZR86_RS18125 0.26 -0.3
39,839 + ABZR86_RS18125 0.26 -0.1
39,840 - ABZR86_RS18125 0.26 +0.1
40,232 + ABZR86_RS18125 0.64 -0.5
40,232 + ABZR86_RS18125 0.64 -0.0
40,232 + ABZR86_RS18125 0.64 -2.0
40,232 + ABZR86_RS18125 0.64 -0.3
40,232 + ABZR86_RS18125 0.64 -0.7
40,232 + ABZR86_RS18125 0.64 -0.7
40,233 - ABZR86_RS18125 0.65 -0.7
40,233 - ABZR86_RS18125 0.65 -1.4
40,233 - ABZR86_RS18125 0.65 -0.8
40,233 - ABZR86_RS18125 0.65 +1.6
40,233 - ABZR86_RS18125 0.65 -0.0
40,233 - ABZR86_RS18125 0.65 -1.0
40,233 - ABZR86_RS18125 0.65 +1.5
40,246 + ABZR86_RS18125 0.66 -0.3
40,247 - ABZR86_RS18125 0.66 -0.0
40,247 - ABZR86_RS18125 0.66 -0.2
40,247 - ABZR86_RS18125 0.66 +0.1
40,688 - -0.1
40,688 - +0.3
40,688 - -0.4
40,689 + +0.5
40,689 + -0.3
40,690 - -0.0
40,690 - +0.0
40,690 - +0.8
40,690 - +0.3
40,767 + -0.7
40,768 - -1.5
40,768 - +0.2
41,632 + ABZR86_RS18130 0.62 +0.1
41,632 + ABZR86_RS18130 0.62 +0.4
41,633 - ABZR86_RS18130 0.62 -1.5
41,633 - ABZR86_RS18130 0.62 +0.1
41,858 - ABZR86_RS18130 0.79 -0.5
41,858 - ABZR86_RS18130 0.79 -1.9
42,145 + +0.2
42,145 + -0.4
42,145 + +0.8
42,145 + -0.2
42,145 + -2.6
42,146 - +1.4
42,146 - +0.7
42,266 + ABZR86_RS18135 0.13 -0.1
42,266 + ABZR86_RS18135 0.13 +0.0
42,267 - ABZR86_RS18135 0.14 -0.1
42,267 - ABZR86_RS18135 0.14 -0.3
42,267 - ABZR86_RS18135 0.14 -0.4
42,276 - ABZR86_RS18135 0.15 -1.9
42,276 - ABZR86_RS18135 0.15 +0.0
42,276 - ABZR86_RS18135 0.15 -0.7
42,310 - ABZR86_RS18135 0.21 -0.1
42,831 - -0.0
42,864 + -0.4
42,864 + +0.8
42,864 + -0.0
42,864 + +0.2
42,864 + +1.0
42,865 - -0.6
42,865 - +0.4
42,865 - +0.1
42,865 - -0.2
42,874 - +0.3
42,874 - +0.8
42,970 + -0.1
42,970 + -0.5
43,063 + ABZR86_RS18140 0.36 +0.2

Or see this region's nucleotide sequence