Experiment: Chloramphenicol 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS13665 and ABZR86_RS13670 are separated by 95 nucleotides ABZR86_RS13670 and ABZR86_RS13675 are separated by 100 nucleotides ABZR86_RS13675 and ABZR86_RS13680 are separated by 8 nucleotides ABZR86_RS13680 and ABZR86_RS13685 are separated by 7 nucleotides
ABZR86_RS13665: ABZR86_RS13665 - DUF2974 domain-containing protein, at 3,054,202 to 3,055,182
_RS13665
ABZR86_RS13670: ABZR86_RS13670 - ankyrin repeat domain-containing protein, at 3,055,278 to 3,056,033
_RS13670
ABZR86_RS13675: ABZR86_RS13675 - LysM domain-containing protein, at 3,056,134 to 3,057,501
_RS13675
ABZR86_RS13680: ABZR86_RS13680 - type III secretion HpaP family protein, at 3,057,510 to 3,058,220
_RS13680
ABZR86_RS13685: ABZR86_RS13685 - hypothetical protein, at 3,058,228 to 3,058,716
_RS13685
Position (kb)
3056
3057
3058 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3055.233 kb on + strand at 3055.234 kb on - strand at 3055.234 kb on - strand at 3055.390 kb on + strand, within ABZR86_RS13670 at 3055.457 kb on + strand, within ABZR86_RS13670 at 3055.458 kb on - strand, within ABZR86_RS13670 at 3055.648 kb on - strand, within ABZR86_RS13670 at 3055.920 kb on + strand, within ABZR86_RS13670 at 3055.920 kb on + strand, within ABZR86_RS13670 at 3055.920 kb on + strand, within ABZR86_RS13670 at 3055.920 kb on + strand, within ABZR86_RS13670 at 3055.921 kb on - strand, within ABZR86_RS13670 at 3055.921 kb on - strand, within ABZR86_RS13670 at 3056.031 kb on + strand at 3056.032 kb on - strand at 3056.042 kb on + strand at 3056.043 kb on - strand at 3056.043 kb on - strand at 3056.043 kb on - strand at 3056.162 kb on + strand at 3056.163 kb on - strand at 3056.163 kb on - strand at 3057.927 kb on - strand, within ABZR86_RS13680 at 3058.163 kb on + strand at 3058.163 kb on + strand at 3058.163 kb on + strand at 3058.169 kb on + strand at 3058.169 kb on + strand at 3058.169 kb on + strand at 3058.170 kb on - strand at 3058.170 kb on - strand at 3058.221 kb on - strand at 3058.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.012 mg/ml remove 3,055,233 + -1.1 3,055,234 - -0.8 3,055,234 - -0.2 3,055,390 + ABZR86_RS13670 0.15 -0.4 3,055,457 + ABZR86_RS13670 0.24 +0.3 3,055,458 - ABZR86_RS13670 0.24 +0.7 3,055,648 - ABZR86_RS13670 0.49 -0.5 3,055,920 + ABZR86_RS13670 0.85 +0.0 3,055,920 + ABZR86_RS13670 0.85 -0.0 3,055,920 + ABZR86_RS13670 0.85 -0.4 3,055,920 + ABZR86_RS13670 0.85 -1.0 3,055,921 - ABZR86_RS13670 0.85 +1.0 3,055,921 - ABZR86_RS13670 0.85 +0.1 3,056,031 + +0.4 3,056,032 - -0.6 3,056,042 + +0.8 3,056,043 - +0.0 3,056,043 - +1.4 3,056,043 - +0.8 3,056,162 + +2.6 3,056,163 - +0.4 3,056,163 - +0.6 3,057,927 - ABZR86_RS13680 0.59 +0.6 3,058,163 + +0.8 3,058,163 + -2.0 3,058,163 + -0.3 3,058,169 + +0.2 3,058,169 + -1.3 3,058,169 + +0.5 3,058,170 - -0.1 3,058,170 - +0.1 3,058,221 - +0.7 3,058,221 - -0.1
Or see this region's nucleotide sequence