Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS04000

Experiment: Chloramphenicol 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS03990 and ABZR86_RS03995 are separated by 89 nucleotidesABZR86_RS03995 and ABZR86_RS04000 overlap by 4 nucleotidesABZR86_RS04000 and ABZR86_RS04005 are separated by 0 nucleotides ABZR86_RS03990: ABZR86_RS03990 - HlyD family efflux transporter periplasmic adaptor subunit, at 875,965 to 877,218 _RS03990 ABZR86_RS03995: ABZR86_RS03995 - ABC transporter ATP-binding protein, at 877,308 to 878,072 _RS03995 ABZR86_RS04000: ABZR86_RS04000 - ABC transporter permease, at 878,069 to 880,507 _RS04000 ABZR86_RS04005: ABZR86_RS04005 - ABC transporter permease, at 880,508 to 882,964 _RS04005 Position (kb) 878 879 880 881Strain fitness (log2 ratio) -2 -1 0 1at 877.098 kb on - strandat 877.195 kb on + strandat 877.195 kb on + strandat 877.196 kb on - strandat 877.196 kb on - strandat 877.196 kb on - strandat 877.236 kb on + strandat 877.237 kb on - strandat 877.354 kb on + strandat 877.355 kb on - strandat 877.422 kb on + strand, within ABZR86_RS03995at 877.423 kb on - strand, within ABZR86_RS03995at 877.653 kb on + strand, within ABZR86_RS03995at 877.653 kb on + strand, within ABZR86_RS03995at 877.654 kb on - strand, within ABZR86_RS03995at 877.718 kb on + strand, within ABZR86_RS03995at 877.936 kb on - strand, within ABZR86_RS03995at 877.936 kb on - strand, within ABZR86_RS03995at 878.301 kb on - strandat 878.411 kb on + strand, within ABZR86_RS04000at 878.411 kb on + strand, within ABZR86_RS04000at 878.411 kb on + strand, within ABZR86_RS04000at 878.412 kb on - strand, within ABZR86_RS04000at 878.412 kb on - strand, within ABZR86_RS04000at 878.412 kb on - strand, within ABZR86_RS04000at 878.412 kb on - strand, within ABZR86_RS04000at 878.412 kb on - strand, within ABZR86_RS04000at 878.702 kb on + strand, within ABZR86_RS04000at 878.702 kb on + strand, within ABZR86_RS04000at 878.702 kb on + strand, within ABZR86_RS04000at 878.703 kb on - strand, within ABZR86_RS04000at 878.703 kb on - strand, within ABZR86_RS04000at 878.703 kb on - strand, within ABZR86_RS04000at 878.703 kb on - strand, within ABZR86_RS04000at 878.703 kb on - strand, within ABZR86_RS04000at 878.703 kb on - strand, within ABZR86_RS04000at 878.703 kb on - strand, within ABZR86_RS04000at 878.705 kb on - strand, within ABZR86_RS04000at 879.447 kb on + strand, within ABZR86_RS04000at 879.447 kb on + strand, within ABZR86_RS04000at 879.639 kb on + strand, within ABZR86_RS04000at 879.650 kb on + strand, within ABZR86_RS04000at 879.651 kb on - strand, within ABZR86_RS04000at 879.651 kb on - strand, within ABZR86_RS04000at 879.762 kb on - strand, within ABZR86_RS04000at 879.762 kb on - strand, within ABZR86_RS04000at 879.860 kb on + strand, within ABZR86_RS04000at 879.860 kb on + strand, within ABZR86_RS04000at 879.861 kb on - strand, within ABZR86_RS04000at 879.905 kb on + strand, within ABZR86_RS04000at 879.905 kb on + strand, within ABZR86_RS04000at 879.905 kb on + strand, within ABZR86_RS04000at 879.905 kb on + strand, within ABZR86_RS04000at 879.905 kb on + strand, within ABZR86_RS04000at 879.905 kb on + strand, within ABZR86_RS04000at 879.906 kb on - strand, within ABZR86_RS04000at 879.906 kb on - strand, within ABZR86_RS04000at 879.906 kb on - strand, within ABZR86_RS04000at 879.906 kb on - strand, within ABZR86_RS04000at 879.906 kb on - strand, within ABZR86_RS04000at 879.906 kb on - strand, within ABZR86_RS04000at 880.175 kb on + strand, within ABZR86_RS04000at 880.175 kb on + strand, within ABZR86_RS04000at 880.175 kb on + strand, within ABZR86_RS04000at 880.176 kb on - strand, within ABZR86_RS04000at 880.176 kb on - strand, within ABZR86_RS04000at 880.176 kb on - strand, within ABZR86_RS04000at 880.176 kb on - strand, within ABZR86_RS04000at 880.176 kb on - strand, within ABZR86_RS04000at 880.380 kb on + strandat 880.380 kb on + strandat 880.381 kb on - strandat 880.381 kb on - strandat 880.513 kb on + strandat 880.513 kb on + strandat 880.514 kb on - strandat 880.514 kb on - strandat 880.664 kb on + strandat 880.665 kb on - strandat 880.712 kb on + strandat 880.716 kb on + strandat 880.716 kb on + strandat 880.717 kb on - strandat 880.717 kb on - strandat 880.739 kb on + strandat 880.739 kb on + strandat 880.740 kb on - strandat 880.839 kb on + strand, within ABZR86_RS04005at 880.839 kb on + strand, within ABZR86_RS04005at 880.840 kb on - strand, within ABZR86_RS04005at 880.840 kb on - strand, within ABZR86_RS04005at 880.955 kb on + strand, within ABZR86_RS04005at 880.956 kb on - strand, within ABZR86_RS04005at 880.956 kb on - strand, within ABZR86_RS04005at 880.956 kb on - strand, within ABZR86_RS04005at 881.135 kb on + strand, within ABZR86_RS04005at 881.135 kb on + strand, within ABZR86_RS04005at 881.135 kb on + strand, within ABZR86_RS04005at 881.135 kb on + strand, within ABZR86_RS04005at 881.135 kb on + strand, within ABZR86_RS04005at 881.136 kb on - strand, within ABZR86_RS04005at 881.136 kb on - strand, within ABZR86_RS04005at 881.136 kb on - strand, within ABZR86_RS04005at 881.136 kb on - strand, within ABZR86_RS04005at 881.216 kb on + strand, within ABZR86_RS04005at 881.216 kb on + strand, within ABZR86_RS04005at 881.216 kb on + strand, within ABZR86_RS04005at 881.216 kb on + strand, within ABZR86_RS04005at 881.216 kb on + strand, within ABZR86_RS04005at 881.216 kb on + strand, within ABZR86_RS04005at 881.216 kb on + strand, within ABZR86_RS04005at 881.217 kb on - strand, within ABZR86_RS04005at 881.217 kb on - strand, within ABZR86_RS04005at 881.217 kb on - strand, within ABZR86_RS04005at 881.217 kb on - strand, within ABZR86_RS04005at 881.217 kb on - strand, within ABZR86_RS04005at 881.241 kb on - strand, within ABZR86_RS04005at 881.241 kb on - strand, within ABZR86_RS04005at 881.241 kb on - strand, within ABZR86_RS04005at 881.301 kb on - strand, within ABZR86_RS04005at 881.301 kb on - strand, within ABZR86_RS04005at 881.381 kb on - strand, within ABZR86_RS04005at 881.403 kb on + strand, within ABZR86_RS04005at 881.403 kb on + strand, within ABZR86_RS04005at 881.403 kb on + strand, within ABZR86_RS04005at 881.403 kb on + strand, within ABZR86_RS04005at 881.404 kb on - strand, within ABZR86_RS04005at 881.404 kb on - strand, within ABZR86_RS04005

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.012 mg/ml
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877,098 - +0.6
877,195 + -1.9
877,195 + -0.0
877,196 - +0.4
877,196 - -0.7
877,196 - -0.2
877,236 + -0.6
877,237 - +0.3
877,354 + -0.1
877,355 - -0.7
877,422 + ABZR86_RS03995 0.15 -0.0
877,423 - ABZR86_RS03995 0.15 +0.3
877,653 + ABZR86_RS03995 0.45 +0.0
877,653 + ABZR86_RS03995 0.45 -0.7
877,654 - ABZR86_RS03995 0.45 -0.3
877,718 + ABZR86_RS03995 0.54 -0.2
877,936 - ABZR86_RS03995 0.82 +0.6
877,936 - ABZR86_RS03995 0.82 -0.3
878,301 - +0.0
878,411 + ABZR86_RS04000 0.14 -0.2
878,411 + ABZR86_RS04000 0.14 -0.5
878,411 + ABZR86_RS04000 0.14 -0.8
878,412 - ABZR86_RS04000 0.14 +0.8
878,412 - ABZR86_RS04000 0.14 +0.0
878,412 - ABZR86_RS04000 0.14 -0.0
878,412 - ABZR86_RS04000 0.14 +0.1
878,412 - ABZR86_RS04000 0.14 -1.5
878,702 + ABZR86_RS04000 0.26 +0.5
878,702 + ABZR86_RS04000 0.26 +0.1
878,702 + ABZR86_RS04000 0.26 -0.4
878,703 - ABZR86_RS04000 0.26 -0.1
878,703 - ABZR86_RS04000 0.26 -0.3
878,703 - ABZR86_RS04000 0.26 +0.6
878,703 - ABZR86_RS04000 0.26 -0.1
878,703 - ABZR86_RS04000 0.26 -1.1
878,703 - ABZR86_RS04000 0.26 +0.7
878,703 - ABZR86_RS04000 0.26 -1.8
878,705 - ABZR86_RS04000 0.26 -1.4
879,447 + ABZR86_RS04000 0.56 +0.7
879,447 + ABZR86_RS04000 0.56 +0.5
879,639 + ABZR86_RS04000 0.64 -2.6
879,650 + ABZR86_RS04000 0.65 +1.4
879,651 - ABZR86_RS04000 0.65 -1.0
879,651 - ABZR86_RS04000 0.65 -0.2
879,762 - ABZR86_RS04000 0.69 -0.8
879,762 - ABZR86_RS04000 0.69 -0.4
879,860 + ABZR86_RS04000 0.73 -1.0
879,860 + ABZR86_RS04000 0.73 -0.6
879,861 - ABZR86_RS04000 0.73 -0.5
879,905 + ABZR86_RS04000 0.75 +0.4
879,905 + ABZR86_RS04000 0.75 -0.8
879,905 + ABZR86_RS04000 0.75 -0.0
879,905 + ABZR86_RS04000 0.75 +0.3
879,905 + ABZR86_RS04000 0.75 -0.1
879,905 + ABZR86_RS04000 0.75 +0.3
879,906 - ABZR86_RS04000 0.75 +1.0
879,906 - ABZR86_RS04000 0.75 -1.7
879,906 - ABZR86_RS04000 0.75 -0.4
879,906 - ABZR86_RS04000 0.75 -0.2
879,906 - ABZR86_RS04000 0.75 -0.4
879,906 - ABZR86_RS04000 0.75 -0.1
880,175 + ABZR86_RS04000 0.86 +0.2
880,175 + ABZR86_RS04000 0.86 +0.1
880,175 + ABZR86_RS04000 0.86 -0.9
880,176 - ABZR86_RS04000 0.86 -0.0
880,176 - ABZR86_RS04000 0.86 +0.4
880,176 - ABZR86_RS04000 0.86 -0.4
880,176 - ABZR86_RS04000 0.86 -2.5
880,176 - ABZR86_RS04000 0.86 +0.5
880,380 + -0.5
880,380 + -1.4
880,381 - -0.1
880,381 - -0.1
880,513 + -1.0
880,513 + +0.0
880,514 - +0.7
880,514 - +0.4
880,664 + +0.3
880,665 - +0.4
880,712 + +0.1
880,716 + -0.4
880,716 + +0.9
880,717 - -0.4
880,717 - -0.4
880,739 + +0.2
880,739 + +0.3
880,740 - +0.6
880,839 + ABZR86_RS04005 0.13 +0.2
880,839 + ABZR86_RS04005 0.13 +0.4
880,840 - ABZR86_RS04005 0.14 +0.4
880,840 - ABZR86_RS04005 0.14 -0.3
880,955 + ABZR86_RS04005 0.18 +0.5
880,956 - ABZR86_RS04005 0.18 +1.4
880,956 - ABZR86_RS04005 0.18 +0.0
880,956 - ABZR86_RS04005 0.18 -0.9
881,135 + ABZR86_RS04005 0.26 -0.1
881,135 + ABZR86_RS04005 0.26 +0.2
881,135 + ABZR86_RS04005 0.26 -0.3
881,135 + ABZR86_RS04005 0.26 +0.0
881,135 + ABZR86_RS04005 0.26 -0.3
881,136 - ABZR86_RS04005 0.26 +0.7
881,136 - ABZR86_RS04005 0.26 +1.1
881,136 - ABZR86_RS04005 0.26 +0.4
881,136 - ABZR86_RS04005 0.26 +1.1
881,216 + ABZR86_RS04005 0.29 +0.3
881,216 + ABZR86_RS04005 0.29 +0.3
881,216 + ABZR86_RS04005 0.29 -0.8
881,216 + ABZR86_RS04005 0.29 -0.1
881,216 + ABZR86_RS04005 0.29 -2.1
881,216 + ABZR86_RS04005 0.29 +0.8
881,216 + ABZR86_RS04005 0.29 -1.7
881,217 - ABZR86_RS04005 0.29 -0.1
881,217 - ABZR86_RS04005 0.29 -0.5
881,217 - ABZR86_RS04005 0.29 +0.1
881,217 - ABZR86_RS04005 0.29 -0.7
881,217 - ABZR86_RS04005 0.29 +0.1
881,241 - ABZR86_RS04005 0.30 -0.3
881,241 - ABZR86_RS04005 0.30 -0.6
881,241 - ABZR86_RS04005 0.30 -0.8
881,301 - ABZR86_RS04005 0.32 +0.4
881,301 - ABZR86_RS04005 0.32 -1.3
881,381 - ABZR86_RS04005 0.36 -0.6
881,403 + ABZR86_RS04005 0.36 -0.0
881,403 + ABZR86_RS04005 0.36 +0.1
881,403 + ABZR86_RS04005 0.36 +0.3
881,403 + ABZR86_RS04005 0.36 +0.3
881,404 - ABZR86_RS04005 0.36 -0.2
881,404 - ABZR86_RS04005 0.36 +1.0

Or see this region's nucleotide sequence