Experiment: Chloramphenicol 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS03050 and ABZR86_RS03055 are separated by 120 nucleotides ABZR86_RS03055 and ABZR86_RS03060 are separated by 50 nucleotides
ABZR86_RS03050: ABZR86_RS03050 - excinuclease ABC subunit UvrA, at 621,627 to 624,035
_RS03050
ABZR86_RS03055: ABZR86_RS03055 - VOC family protein, at 624,156 to 624,566
_RS03055
ABZR86_RS03060: ABZR86_RS03060 - helix-turn-helix transcriptional regulator, at 624,617 to 625,066
_RS03060
Position (kb) 624
625 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 623.272 kb on + strand, within ABZR86_RS03050 at 623.273 kb on - strand, within ABZR86_RS03050 at 623.273 kb on - strand, within ABZR86_RS03050 at 623.273 kb on - strand, within ABZR86_RS03050 at 623.317 kb on + strand, within ABZR86_RS03050 at 623.317 kb on + strand, within ABZR86_RS03050 at 623.318 kb on - strand, within ABZR86_RS03050 at 623.423 kb on - strand, within ABZR86_RS03050 at 623.470 kb on + strand, within ABZR86_RS03050 at 623.470 kb on + strand, within ABZR86_RS03050 at 623.471 kb on - strand, within ABZR86_RS03050 at 623.471 kb on - strand, within ABZR86_RS03050 at 623.648 kb on + strand, within ABZR86_RS03050 at 623.836 kb on + strand at 623.836 kb on + strand at 623.836 kb on + strand at 623.836 kb on + strand at 623.837 kb on - strand at 623.837 kb on - strand at 623.837 kb on - strand at 623.837 kb on - strand at 624.056 kb on + strand at 624.056 kb on + strand at 624.057 kb on - strand at 624.057 kb on - strand at 624.057 kb on - strand at 624.057 kb on - strand at 624.138 kb on + strand at 624.139 kb on - strand at 624.139 kb on - strand at 624.139 kb on - strand at 624.397 kb on + strand, within ABZR86_RS03055 at 624.624 kb on - strand at 624.879 kb on + strand, within ABZR86_RS03060 at 624.880 kb on - strand, within ABZR86_RS03060 at 624.880 kb on - strand, within ABZR86_RS03060 at 624.880 kb on - strand, within ABZR86_RS03060 at 624.984 kb on + strand, within ABZR86_RS03060 at 625.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.012 mg/ml remove 623,272 + ABZR86_RS03050 0.68 -0.3 623,273 - ABZR86_RS03050 0.68 -0.4 623,273 - ABZR86_RS03050 0.68 +0.5 623,273 - ABZR86_RS03050 0.68 +0.6 623,317 + ABZR86_RS03050 0.70 +0.5 623,317 + ABZR86_RS03050 0.70 -0.3 623,318 - ABZR86_RS03050 0.70 +0.7 623,423 - ABZR86_RS03050 0.75 -0.2 623,470 + ABZR86_RS03050 0.77 +0.2 623,470 + ABZR86_RS03050 0.77 +0.3 623,471 - ABZR86_RS03050 0.77 -0.1 623,471 - ABZR86_RS03050 0.77 +0.6 623,648 + ABZR86_RS03050 0.84 -0.4 623,836 + -0.1 623,836 + +0.4 623,836 + -0.5 623,836 + +0.2 623,837 - +1.0 623,837 - -0.7 623,837 - -0.6 623,837 - +0.4 624,056 + +0.3 624,056 + -0.1 624,057 - -0.8 624,057 - +1.3 624,057 - +0.2 624,057 - -3.2 624,138 + -0.4 624,139 - +1.9 624,139 - -0.2 624,139 - +0.4 624,397 + ABZR86_RS03055 0.59 -0.4 624,624 - +0.3 624,879 + ABZR86_RS03060 0.58 -1.5 624,880 - ABZR86_RS03060 0.58 -0.7 624,880 - ABZR86_RS03060 0.58 -0.7 624,880 - ABZR86_RS03060 0.58 +0.5 624,984 + ABZR86_RS03060 0.82 -1.8 625,175 - +0.1
Or see this region's nucleotide sequence