Experiment: Chloramphenicol 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02595 and ABZR86_RS02600 are separated by 54 nucleotides ABZR86_RS02600 and ABZR86_RS02605 are separated by 9 nucleotides ABZR86_RS02605 and ABZR86_RS02610 overlap by 4 nucleotides ABZR86_RS02610 and ABZR86_RS02615 overlap by 8 nucleotides
ABZR86_RS02595: ABZR86_RS02595 - phage major capsid protein, at 526,731 to 527,969
_RS02595
ABZR86_RS02600: ABZR86_RS02600 - hypothetical protein, at 528,024 to 528,194
_RS02600
ABZR86_RS02605: ABZR86_RS02605 - head-tail connector protein, at 528,204 to 528,689
_RS02605
ABZR86_RS02610: ABZR86_RS02610 - head-tail adaptor protein, at 528,686 to 529,051
_RS02610
ABZR86_RS02615: ABZR86_RS02615 - HK97 gp10 family phage protein, at 529,044 to 529,571
_RS02615
Position (kb) 528
529 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 527.116 kb on - strand, within ABZR86_RS02595 at 527.230 kb on - strand, within ABZR86_RS02595 at 527.334 kb on + strand, within ABZR86_RS02595 at 527.335 kb on - strand, within ABZR86_RS02595 at 527.335 kb on - strand, within ABZR86_RS02595 at 527.335 kb on - strand, within ABZR86_RS02595 at 527.445 kb on + strand, within ABZR86_RS02595 at 527.445 kb on + strand, within ABZR86_RS02595 at 527.445 kb on + strand, within ABZR86_RS02595 at 527.445 kb on + strand, within ABZR86_RS02595 at 527.445 kb on + strand, within ABZR86_RS02595 at 527.445 kb on + strand, within ABZR86_RS02595 at 527.445 kb on + strand, within ABZR86_RS02595 at 527.445 kb on + strand, within ABZR86_RS02595 at 527.445 kb on + strand, within ABZR86_RS02595 at 527.445 kb on + strand, within ABZR86_RS02595 at 527.446 kb on - strand, within ABZR86_RS02595 at 527.446 kb on - strand, within ABZR86_RS02595 at 527.490 kb on + strand, within ABZR86_RS02595 at 527.490 kb on + strand, within ABZR86_RS02595 at 527.491 kb on - strand, within ABZR86_RS02595 at 527.598 kb on + strand, within ABZR86_RS02595 at 527.598 kb on + strand, within ABZR86_RS02595 at 527.599 kb on - strand, within ABZR86_RS02595 at 527.599 kb on - strand, within ABZR86_RS02595 at 527.599 kb on - strand, within ABZR86_RS02595 at 527.768 kb on + strand, within ABZR86_RS02595 at 527.769 kb on - strand, within ABZR86_RS02595 at 527.826 kb on + strand, within ABZR86_RS02595 at 527.826 kb on + strand, within ABZR86_RS02595 at 527.827 kb on - strand, within ABZR86_RS02595 at 527.827 kb on - strand, within ABZR86_RS02595 at 527.898 kb on + strand at 527.898 kb on + strand at 527.899 kb on - strand at 527.901 kb on - strand at 527.901 kb on - strand at 527.967 kb on + strand at 527.967 kb on + strand at 527.968 kb on - strand at 527.984 kb on + strand at 528.068 kb on + strand, within ABZR86_RS02600 at 528.069 kb on - strand, within ABZR86_RS02600 at 528.170 kb on + strand, within ABZR86_RS02600 at 528.171 kb on - strand, within ABZR86_RS02600 at 528.171 kb on - strand, within ABZR86_RS02600 at 528.188 kb on + strand at 528.189 kb on - strand at 528.189 kb on - strand at 528.192 kb on + strand at 528.193 kb on - strand at 528.315 kb on + strand, within ABZR86_RS02605 at 528.316 kb on - strand, within ABZR86_RS02605 at 528.331 kb on + strand, within ABZR86_RS02605 at 528.405 kb on + strand, within ABZR86_RS02605 at 528.405 kb on + strand, within ABZR86_RS02605 at 528.406 kb on - strand, within ABZR86_RS02605 at 528.571 kb on + strand, within ABZR86_RS02605 at 528.571 kb on + strand, within ABZR86_RS02605 at 528.571 kb on + strand, within ABZR86_RS02605 at 528.652 kb on - strand at 528.727 kb on - strand, within ABZR86_RS02610 at 528.727 kb on - strand, within ABZR86_RS02610 at 528.730 kb on + strand, within ABZR86_RS02610 at 528.731 kb on - strand, within ABZR86_RS02610 at 528.769 kb on + strand, within ABZR86_RS02610 at 528.783 kb on + strand, within ABZR86_RS02610 at 528.796 kb on - strand, within ABZR86_RS02610 at 528.876 kb on - strand, within ABZR86_RS02610 at 528.876 kb on - strand, within ABZR86_RS02610 at 528.979 kb on - strand, within ABZR86_RS02610 at 529.166 kb on - strand, within ABZR86_RS02615 at 529.166 kb on - strand, within ABZR86_RS02615
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.012 mg/ml remove 527,116 - ABZR86_RS02595 0.31 +0.5 527,230 - ABZR86_RS02595 0.40 +0.0 527,334 + ABZR86_RS02595 0.49 +1.6 527,335 - ABZR86_RS02595 0.49 +1.2 527,335 - ABZR86_RS02595 0.49 +0.4 527,335 - ABZR86_RS02595 0.49 +0.1 527,445 + ABZR86_RS02595 0.58 -0.5 527,445 + ABZR86_RS02595 0.58 -0.4 527,445 + ABZR86_RS02595 0.58 -1.9 527,445 + ABZR86_RS02595 0.58 +0.2 527,445 + ABZR86_RS02595 0.58 -1.3 527,445 + ABZR86_RS02595 0.58 -0.1 527,445 + ABZR86_RS02595 0.58 +0.5 527,445 + ABZR86_RS02595 0.58 +0.2 527,445 + ABZR86_RS02595 0.58 +1.2 527,445 + ABZR86_RS02595 0.58 -0.4 527,446 - ABZR86_RS02595 0.58 +1.0 527,446 - ABZR86_RS02595 0.58 -0.3 527,490 + ABZR86_RS02595 0.61 +1.7 527,490 + ABZR86_RS02595 0.61 -0.3 527,491 - ABZR86_RS02595 0.61 +0.4 527,598 + ABZR86_RS02595 0.70 +0.8 527,598 + ABZR86_RS02595 0.70 -0.2 527,599 - ABZR86_RS02595 0.70 -2.9 527,599 - ABZR86_RS02595 0.70 -0.4 527,599 - ABZR86_RS02595 0.70 +0.2 527,768 + ABZR86_RS02595 0.84 -0.4 527,769 - ABZR86_RS02595 0.84 -0.2 527,826 + ABZR86_RS02595 0.88 -0.2 527,826 + ABZR86_RS02595 0.88 +0.2 527,827 - ABZR86_RS02595 0.88 +0.4 527,827 - ABZR86_RS02595 0.88 -0.2 527,898 + +0.3 527,898 + +0.6 527,899 - -2.0 527,901 - +0.4 527,901 - -1.6 527,967 + +0.7 527,967 + +0.5 527,968 - +0.2 527,984 + -0.0 528,068 + ABZR86_RS02600 0.26 -0.9 528,069 - ABZR86_RS02600 0.26 -0.4 528,170 + ABZR86_RS02600 0.85 +0.4 528,171 - ABZR86_RS02600 0.86 -0.6 528,171 - ABZR86_RS02600 0.86 -0.0 528,188 + -0.1 528,189 - +0.6 528,189 - -2.1 528,192 + +0.1 528,193 - +1.3 528,315 + ABZR86_RS02605 0.23 +2.0 528,316 - ABZR86_RS02605 0.23 +0.7 528,331 + ABZR86_RS02605 0.26 +0.6 528,405 + ABZR86_RS02605 0.41 +0.7 528,405 + ABZR86_RS02605 0.41 -0.2 528,406 - ABZR86_RS02605 0.42 +0.9 528,571 + ABZR86_RS02605 0.76 +0.5 528,571 + ABZR86_RS02605 0.76 +0.3 528,571 + ABZR86_RS02605 0.76 -0.6 528,652 - -0.5 528,727 - ABZR86_RS02610 0.11 -2.5 528,727 - ABZR86_RS02610 0.11 -1.0 528,730 + ABZR86_RS02610 0.12 -0.6 528,731 - ABZR86_RS02610 0.12 +0.0 528,769 + ABZR86_RS02610 0.23 +0.4 528,783 + ABZR86_RS02610 0.27 +0.1 528,796 - ABZR86_RS02610 0.30 -0.3 528,876 - ABZR86_RS02610 0.52 -1.0 528,876 - ABZR86_RS02610 0.52 -0.3 528,979 - ABZR86_RS02610 0.80 +0.1 529,166 - ABZR86_RS02615 0.23 +0.1 529,166 - ABZR86_RS02615 0.23 +0.6
Or see this region's nucleotide sequence