Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS02595

Experiment: Chloramphenicol 0.012 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS02585 and ABZR86_RS02590 overlap by 23 nucleotidesABZR86_RS02590 and ABZR86_RS02595 overlap by 4 nucleotidesABZR86_RS02595 and ABZR86_RS02600 are separated by 54 nucleotidesABZR86_RS02600 and ABZR86_RS02605 are separated by 9 nucleotidesABZR86_RS02605 and ABZR86_RS02610 overlap by 4 nucleotides ABZR86_RS02585: ABZR86_RS02585 - phage portal protein, at 524,622 to 525,902 _RS02585 ABZR86_RS02590: ABZR86_RS02590 - head maturation protease, ClpP-related, at 525,880 to 526,734 _RS02590 ABZR86_RS02595: ABZR86_RS02595 - phage major capsid protein, at 526,731 to 527,969 _RS02595 ABZR86_RS02600: ABZR86_RS02600 - hypothetical protein, at 528,024 to 528,194 _RS02600 ABZR86_RS02605: ABZR86_RS02605 - head-tail connector protein, at 528,204 to 528,689 _RS02605 ABZR86_RS02610: ABZR86_RS02610 - head-tail adaptor protein, at 528,686 to 529,051 _RS02610 Position (kb) 526 527 528Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 526.021 kb on + strand, within ABZR86_RS02590at 526.141 kb on + strand, within ABZR86_RS02590at 526.142 kb on - strand, within ABZR86_RS02590at 526.162 kb on + strand, within ABZR86_RS02590at 526.162 kb on + strand, within ABZR86_RS02590at 526.163 kb on - strand, within ABZR86_RS02590at 526.163 kb on - strand, within ABZR86_RS02590at 526.163 kb on - strand, within ABZR86_RS02590at 526.385 kb on - strand, within ABZR86_RS02590at 526.623 kb on + strand, within ABZR86_RS02590at 526.624 kb on - strand, within ABZR86_RS02590at 527.116 kb on - strand, within ABZR86_RS02595at 527.230 kb on - strand, within ABZR86_RS02595at 527.334 kb on + strand, within ABZR86_RS02595at 527.335 kb on - strand, within ABZR86_RS02595at 527.335 kb on - strand, within ABZR86_RS02595at 527.335 kb on - strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.445 kb on + strand, within ABZR86_RS02595at 527.446 kb on - strand, within ABZR86_RS02595at 527.446 kb on - strand, within ABZR86_RS02595at 527.490 kb on + strand, within ABZR86_RS02595at 527.490 kb on + strand, within ABZR86_RS02595at 527.491 kb on - strand, within ABZR86_RS02595at 527.598 kb on + strand, within ABZR86_RS02595at 527.598 kb on + strand, within ABZR86_RS02595at 527.599 kb on - strand, within ABZR86_RS02595at 527.599 kb on - strand, within ABZR86_RS02595at 527.599 kb on - strand, within ABZR86_RS02595at 527.768 kb on + strand, within ABZR86_RS02595at 527.769 kb on - strand, within ABZR86_RS02595at 527.826 kb on + strand, within ABZR86_RS02595at 527.826 kb on + strand, within ABZR86_RS02595at 527.827 kb on - strand, within ABZR86_RS02595at 527.827 kb on - strand, within ABZR86_RS02595at 527.898 kb on + strandat 527.898 kb on + strandat 527.899 kb on - strandat 527.901 kb on - strandat 527.901 kb on - strandat 527.967 kb on + strandat 527.967 kb on + strandat 527.968 kb on - strandat 527.984 kb on + strandat 528.068 kb on + strand, within ABZR86_RS02600at 528.069 kb on - strand, within ABZR86_RS02600at 528.170 kb on + strand, within ABZR86_RS02600at 528.171 kb on - strand, within ABZR86_RS02600at 528.171 kb on - strand, within ABZR86_RS02600at 528.188 kb on + strandat 528.189 kb on - strandat 528.189 kb on - strandat 528.192 kb on + strandat 528.193 kb on - strandat 528.315 kb on + strand, within ABZR86_RS02605at 528.316 kb on - strand, within ABZR86_RS02605at 528.331 kb on + strand, within ABZR86_RS02605at 528.405 kb on + strand, within ABZR86_RS02605at 528.405 kb on + strand, within ABZR86_RS02605at 528.406 kb on - strand, within ABZR86_RS02605at 528.571 kb on + strand, within ABZR86_RS02605at 528.571 kb on + strand, within ABZR86_RS02605at 528.571 kb on + strand, within ABZR86_RS02605at 528.652 kb on - strandat 528.727 kb on - strand, within ABZR86_RS02610at 528.727 kb on - strand, within ABZR86_RS02610at 528.730 kb on + strand, within ABZR86_RS02610at 528.731 kb on - strand, within ABZR86_RS02610at 528.769 kb on + strand, within ABZR86_RS02610at 528.783 kb on + strand, within ABZR86_RS02610at 528.796 kb on - strand, within ABZR86_RS02610at 528.876 kb on - strand, within ABZR86_RS02610at 528.876 kb on - strand, within ABZR86_RS02610

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.012 mg/ml
remove
526,021 + ABZR86_RS02590 0.16 -0.0
526,141 + ABZR86_RS02590 0.31 -0.4
526,142 - ABZR86_RS02590 0.31 -1.3
526,162 + ABZR86_RS02590 0.33 -0.2
526,162 + ABZR86_RS02590 0.33 -0.2
526,163 - ABZR86_RS02590 0.33 -1.3
526,163 - ABZR86_RS02590 0.33 -0.9
526,163 - ABZR86_RS02590 0.33 -0.3
526,385 - ABZR86_RS02590 0.59 +0.5
526,623 + ABZR86_RS02590 0.87 +0.2
526,624 - ABZR86_RS02590 0.87 +0.6
527,116 - ABZR86_RS02595 0.31 +0.5
527,230 - ABZR86_RS02595 0.40 +0.0
527,334 + ABZR86_RS02595 0.49 +1.6
527,335 - ABZR86_RS02595 0.49 +1.2
527,335 - ABZR86_RS02595 0.49 +0.4
527,335 - ABZR86_RS02595 0.49 +0.1
527,445 + ABZR86_RS02595 0.58 -0.5
527,445 + ABZR86_RS02595 0.58 -0.4
527,445 + ABZR86_RS02595 0.58 -1.9
527,445 + ABZR86_RS02595 0.58 +0.2
527,445 + ABZR86_RS02595 0.58 -1.3
527,445 + ABZR86_RS02595 0.58 -0.1
527,445 + ABZR86_RS02595 0.58 +0.5
527,445 + ABZR86_RS02595 0.58 +0.2
527,445 + ABZR86_RS02595 0.58 +1.2
527,445 + ABZR86_RS02595 0.58 -0.4
527,446 - ABZR86_RS02595 0.58 +1.0
527,446 - ABZR86_RS02595 0.58 -0.3
527,490 + ABZR86_RS02595 0.61 +1.7
527,490 + ABZR86_RS02595 0.61 -0.3
527,491 - ABZR86_RS02595 0.61 +0.4
527,598 + ABZR86_RS02595 0.70 +0.8
527,598 + ABZR86_RS02595 0.70 -0.2
527,599 - ABZR86_RS02595 0.70 -2.9
527,599 - ABZR86_RS02595 0.70 -0.4
527,599 - ABZR86_RS02595 0.70 +0.2
527,768 + ABZR86_RS02595 0.84 -0.4
527,769 - ABZR86_RS02595 0.84 -0.2
527,826 + ABZR86_RS02595 0.88 -0.2
527,826 + ABZR86_RS02595 0.88 +0.2
527,827 - ABZR86_RS02595 0.88 +0.4
527,827 - ABZR86_RS02595 0.88 -0.2
527,898 + +0.3
527,898 + +0.6
527,899 - -2.0
527,901 - +0.4
527,901 - -1.6
527,967 + +0.7
527,967 + +0.5
527,968 - +0.2
527,984 + -0.0
528,068 + ABZR86_RS02600 0.26 -0.9
528,069 - ABZR86_RS02600 0.26 -0.4
528,170 + ABZR86_RS02600 0.85 +0.4
528,171 - ABZR86_RS02600 0.86 -0.6
528,171 - ABZR86_RS02600 0.86 -0.0
528,188 + -0.1
528,189 - +0.6
528,189 - -2.1
528,192 + +0.1
528,193 - +1.3
528,315 + ABZR86_RS02605 0.23 +2.0
528,316 - ABZR86_RS02605 0.23 +0.7
528,331 + ABZR86_RS02605 0.26 +0.6
528,405 + ABZR86_RS02605 0.41 +0.7
528,405 + ABZR86_RS02605 0.41 -0.2
528,406 - ABZR86_RS02605 0.42 +0.9
528,571 + ABZR86_RS02605 0.76 +0.5
528,571 + ABZR86_RS02605 0.76 +0.3
528,571 + ABZR86_RS02605 0.76 -0.6
528,652 - -0.5
528,727 - ABZR86_RS02610 0.11 -2.5
528,727 - ABZR86_RS02610 0.11 -1.0
528,730 + ABZR86_RS02610 0.12 -0.6
528,731 - ABZR86_RS02610 0.12 +0.0
528,769 + ABZR86_RS02610 0.23 +0.4
528,783 + ABZR86_RS02610 0.27 +0.1
528,796 - ABZR86_RS02610 0.30 -0.3
528,876 - ABZR86_RS02610 0.52 -1.0
528,876 - ABZR86_RS02610 0.52 -0.3

Or see this region's nucleotide sequence