Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS02025

Experiment: Chloramphenicol 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS02010 and ABZR86_RS02015 are separated by 86 nucleotidesABZR86_RS02015 and ABZR86_RS02020 are separated by 79 nucleotidesABZR86_RS02020 and ABZR86_RS02025 overlap by 4 nucleotidesABZR86_RS02025 and ABZR86_RS02030 are separated by 721 nucleotides ABZR86_RS02010: ABZR86_RS02010 - hypothetical protein, at 433,453 to 434,010 _RS02010 ABZR86_RS02015: ABZR86_RS02015 - AlpA family transcriptional regulator, at 434,097 to 434,309 _RS02015 ABZR86_RS02020: ABZR86_RS02020 - DNA primase, at 434,389 to 434,823 _RS02020 ABZR86_RS02025: ABZR86_RS02025 - AAA family ATPase, at 434,820 to 435,992 _RS02025 ABZR86_RS02030: ABZR86_RS02030 - hypothetical protein, at 436,714 to 437,517 _RS02030 Position (kb) 434 435 436Strain fitness (log2 ratio) -3 -2 -1 0 1at 433.822 kb on - strand, within ABZR86_RS02010at 433.827 kb on + strand, within ABZR86_RS02010at 433.852 kb on - strand, within ABZR86_RS02010at 433.852 kb on - strand, within ABZR86_RS02010at 433.869 kb on + strand, within ABZR86_RS02010at 433.869 kb on + strand, within ABZR86_RS02010at 433.869 kb on + strand, within ABZR86_RS02010at 433.870 kb on - strand, within ABZR86_RS02010at 433.870 kb on - strand, within ABZR86_RS02010at 433.870 kb on - strand, within ABZR86_RS02010at 433.871 kb on + strand, within ABZR86_RS02010at 433.871 kb on + strand, within ABZR86_RS02010at 433.871 kb on + strand, within ABZR86_RS02010at 433.897 kb on + strand, within ABZR86_RS02010at 433.897 kb on + strand, within ABZR86_RS02010at 433.898 kb on - strand, within ABZR86_RS02010at 433.898 kb on - strand, within ABZR86_RS02010at 433.898 kb on - strand, within ABZR86_RS02010at 433.941 kb on - strand, within ABZR86_RS02010at 433.977 kb on + strandat 433.978 kb on - strandat 434.008 kb on + strandat 434.008 kb on + strandat 434.008 kb on + strandat 434.009 kb on - strandat 434.011 kb on + strandat 434.012 kb on - strandat 434.092 kb on + strandat 434.092 kb on + strandat 434.093 kb on - strandat 434.162 kb on + strand, within ABZR86_RS02015at 434.162 kb on + strand, within ABZR86_RS02015at 434.179 kb on - strand, within ABZR86_RS02015at 434.245 kb on + strand, within ABZR86_RS02015at 434.373 kb on + strandat 434.373 kb on + strandat 434.373 kb on + strandat 434.373 kb on + strandat 434.374 kb on - strandat 434.374 kb on - strandat 434.374 kb on - strandat 434.418 kb on + strandat 434.418 kb on + strandat 434.418 kb on + strandat 434.419 kb on - strandat 434.499 kb on + strand, within ABZR86_RS02020at 434.595 kb on - strand, within ABZR86_RS02020at 434.624 kb on + strand, within ABZR86_RS02020at 434.625 kb on - strand, within ABZR86_RS02020at 434.625 kb on - strand, within ABZR86_RS02020at 434.715 kb on + strand, within ABZR86_RS02020at 434.775 kb on + strand, within ABZR86_RS02020at 434.776 kb on - strand, within ABZR86_RS02020at 434.776 kb on - strand, within ABZR86_RS02020at 434.819 kb on + strandat 434.819 kb on + strandat 434.820 kb on - strandat 434.820 kb on - strandat 434.961 kb on + strand, within ABZR86_RS02025at 434.961 kb on + strand, within ABZR86_RS02025at 434.961 kb on + strand, within ABZR86_RS02025at 434.962 kb on - strand, within ABZR86_RS02025at 434.962 kb on - strand, within ABZR86_RS02025at 434.962 kb on - strand, within ABZR86_RS02025at 434.987 kb on + strand, within ABZR86_RS02025at 434.988 kb on - strand, within ABZR86_RS02025at 435.091 kb on + strand, within ABZR86_RS02025at 435.092 kb on - strand, within ABZR86_RS02025at 435.092 kb on - strand, within ABZR86_RS02025at 435.092 kb on - strand, within ABZR86_RS02025at 435.110 kb on + strand, within ABZR86_RS02025at 435.110 kb on + strand, within ABZR86_RS02025at 435.111 kb on - strand, within ABZR86_RS02025at 435.111 kb on - strand, within ABZR86_RS02025at 435.132 kb on + strand, within ABZR86_RS02025at 435.132 kb on + strand, within ABZR86_RS02025at 435.132 kb on + strand, within ABZR86_RS02025at 435.152 kb on + strand, within ABZR86_RS02025at 435.152 kb on + strand, within ABZR86_RS02025at 435.232 kb on + strand, within ABZR86_RS02025at 435.243 kb on + strand, within ABZR86_RS02025at 435.243 kb on + strand, within ABZR86_RS02025at 435.243 kb on + strand, within ABZR86_RS02025at 435.243 kb on + strand, within ABZR86_RS02025at 435.243 kb on + strand, within ABZR86_RS02025at 435.243 kb on + strand, within ABZR86_RS02025at 435.244 kb on - strand, within ABZR86_RS02025at 435.244 kb on - strand, within ABZR86_RS02025at 435.244 kb on - strand, within ABZR86_RS02025at 435.244 kb on - strand, within ABZR86_RS02025at 435.244 kb on - strand, within ABZR86_RS02025at 435.245 kb on + strand, within ABZR86_RS02025at 435.334 kb on + strand, within ABZR86_RS02025at 435.335 kb on - strand, within ABZR86_RS02025at 435.335 kb on - strand, within ABZR86_RS02025at 435.335 kb on - strand, within ABZR86_RS02025at 435.335 kb on - strand, within ABZR86_RS02025at 435.335 kb on - strand, within ABZR86_RS02025at 435.384 kb on + strand, within ABZR86_RS02025at 435.616 kb on + strand, within ABZR86_RS02025at 435.616 kb on + strand, within ABZR86_RS02025at 435.616 kb on + strand, within ABZR86_RS02025at 435.616 kb on + strand, within ABZR86_RS02025at 435.616 kb on + strand, within ABZR86_RS02025at 435.617 kb on - strand, within ABZR86_RS02025at 435.617 kb on - strand, within ABZR86_RS02025at 435.617 kb on - strand, within ABZR86_RS02025at 435.621 kb on - strand, within ABZR86_RS02025at 435.621 kb on - strand, within ABZR86_RS02025at 435.651 kb on + strand, within ABZR86_RS02025at 435.651 kb on + strand, within ABZR86_RS02025at 435.651 kb on + strand, within ABZR86_RS02025at 435.652 kb on - strand, within ABZR86_RS02025at 435.652 kb on - strand, within ABZR86_RS02025at 435.652 kb on - strand, within ABZR86_RS02025at 435.652 kb on - strand, within ABZR86_RS02025at 435.652 kb on - strand, within ABZR86_RS02025at 435.652 kb on - strand, within ABZR86_RS02025at 435.685 kb on - strand, within ABZR86_RS02025at 435.791 kb on - strand, within ABZR86_RS02025at 435.791 kb on - strand, within ABZR86_RS02025at 435.791 kb on - strand, within ABZR86_RS02025at 435.791 kb on - strand, within ABZR86_RS02025at 435.833 kb on + strand, within ABZR86_RS02025at 435.872 kb on + strand, within ABZR86_RS02025at 435.872 kb on + strand, within ABZR86_RS02025at 435.872 kb on + strand, within ABZR86_RS02025at 435.873 kb on - strand, within ABZR86_RS02025at 435.873 kb on - strand, within ABZR86_RS02025at 435.873 kb on - strand, within ABZR86_RS02025at 435.938 kb on + strandat 435.938 kb on + strandat 435.939 kb on - strandat 435.957 kb on - strandat 435.957 kb on - strandat 436.052 kb on + strandat 436.052 kb on + strandat 436.076 kb on + strandat 436.176 kb on - strandat 436.279 kb on + strandat 436.280 kb on - strandat 436.283 kb on + strandat 436.283 kb on + strandat 436.283 kb on + strandat 436.283 kb on + strandat 436.284 kb on - strandat 436.392 kb on - strandat 436.392 kb on - strandat 436.400 kb on + strandat 436.403 kb on + strandat 436.403 kb on + strandat 436.404 kb on - strandat 436.471 kb on + strandat 436.471 kb on + strandat 436.471 kb on + strandat 436.471 kb on + strandat 436.472 kb on - strandat 436.472 kb on - strandat 436.472 kb on - strandat 436.577 kb on - strandat 436.577 kb on - strandat 436.577 kb on - strandat 436.579 kb on + strandat 436.635 kb on + strandat 436.635 kb on + strandat 436.636 kb on - strandat 436.636 kb on - strandat 436.822 kb on + strand, within ABZR86_RS02030at 436.822 kb on + strand, within ABZR86_RS02030at 436.822 kb on + strand, within ABZR86_RS02030at 436.823 kb on - strand, within ABZR86_RS02030at 436.823 kb on - strand, within ABZR86_RS02030at 436.823 kb on - strand, within ABZR86_RS02030at 436.826 kb on + strand, within ABZR86_RS02030at 436.827 kb on - strand, within ABZR86_RS02030at 436.909 kb on - strand, within ABZR86_RS02030at 436.957 kb on - strand, within ABZR86_RS02030at 436.981 kb on - strand, within ABZR86_RS02030

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.012 mg/ml
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433,822 - ABZR86_RS02010 0.66 +0.6
433,827 + ABZR86_RS02010 0.67 +0.1
433,852 - ABZR86_RS02010 0.72 +0.4
433,852 - ABZR86_RS02010 0.72 -0.5
433,869 + ABZR86_RS02010 0.75 +0.8
433,869 + ABZR86_RS02010 0.75 -0.2
433,869 + ABZR86_RS02010 0.75 -0.3
433,870 - ABZR86_RS02010 0.75 -0.3
433,870 - ABZR86_RS02010 0.75 -0.9
433,870 - ABZR86_RS02010 0.75 -1.3
433,871 + ABZR86_RS02010 0.75 -0.4
433,871 + ABZR86_RS02010 0.75 -0.3
433,871 + ABZR86_RS02010 0.75 -1.2
433,897 + ABZR86_RS02010 0.80 +0.8
433,897 + ABZR86_RS02010 0.80 +0.7
433,898 - ABZR86_RS02010 0.80 +0.0
433,898 - ABZR86_RS02010 0.80 -0.3
433,898 - ABZR86_RS02010 0.80 +0.8
433,941 - ABZR86_RS02010 0.87 -0.2
433,977 + +0.8
433,978 - +0.1
434,008 + -0.1
434,008 + +0.3
434,008 + +0.0
434,009 - -0.3
434,011 + +0.0
434,012 - -0.7
434,092 + -1.6
434,092 + +0.7
434,093 - -0.1
434,162 + ABZR86_RS02015 0.31 -0.7
434,162 + ABZR86_RS02015 0.31 +0.1
434,179 - ABZR86_RS02015 0.38 -2.2
434,245 + ABZR86_RS02015 0.69 +0.7
434,373 + -0.5
434,373 + +0.0
434,373 + -0.1
434,373 + +1.2
434,374 - -1.0
434,374 - +0.3
434,374 - +0.6
434,418 + -0.7
434,418 + +0.3
434,418 + +0.2
434,419 - +0.5
434,499 + ABZR86_RS02020 0.25 +0.9
434,595 - ABZR86_RS02020 0.47 -0.1
434,624 + ABZR86_RS02020 0.54 -2.9
434,625 - ABZR86_RS02020 0.54 -0.2
434,625 - ABZR86_RS02020 0.54 +0.5
434,715 + ABZR86_RS02020 0.75 -0.2
434,775 + ABZR86_RS02020 0.89 +0.0
434,776 - ABZR86_RS02020 0.89 -0.3
434,776 - ABZR86_RS02020 0.89 +0.2
434,819 + -1.8
434,819 + +0.0
434,820 - +0.0
434,820 - -2.2
434,961 + ABZR86_RS02025 0.12 -1.5
434,961 + ABZR86_RS02025 0.12 +1.7
434,961 + ABZR86_RS02025 0.12 +0.8
434,962 - ABZR86_RS02025 0.12 +0.1
434,962 - ABZR86_RS02025 0.12 -0.2
434,962 - ABZR86_RS02025 0.12 -0.7
434,987 + ABZR86_RS02025 0.14 -0.9
434,988 - ABZR86_RS02025 0.14 +0.2
435,091 + ABZR86_RS02025 0.23 -0.1
435,092 - ABZR86_RS02025 0.23 +0.0
435,092 - ABZR86_RS02025 0.23 +1.0
435,092 - ABZR86_RS02025 0.23 -0.8
435,110 + ABZR86_RS02025 0.25 -0.5
435,110 + ABZR86_RS02025 0.25 +1.3
435,111 - ABZR86_RS02025 0.25 -1.3
435,111 - ABZR86_RS02025 0.25 -0.7
435,132 + ABZR86_RS02025 0.27 -0.5
435,132 + ABZR86_RS02025 0.27 -0.6
435,132 + ABZR86_RS02025 0.27 +0.6
435,152 + ABZR86_RS02025 0.28 -0.2
435,152 + ABZR86_RS02025 0.28 -0.1
435,232 + ABZR86_RS02025 0.35 +0.3
435,243 + ABZR86_RS02025 0.36 +0.4
435,243 + ABZR86_RS02025 0.36 -0.2
435,243 + ABZR86_RS02025 0.36 +1.2
435,243 + ABZR86_RS02025 0.36 +0.3
435,243 + ABZR86_RS02025 0.36 +0.4
435,243 + ABZR86_RS02025 0.36 +0.5
435,244 - ABZR86_RS02025 0.36 -0.4
435,244 - ABZR86_RS02025 0.36 +0.1
435,244 - ABZR86_RS02025 0.36 -0.2
435,244 - ABZR86_RS02025 0.36 -0.4
435,244 - ABZR86_RS02025 0.36 -0.1
435,245 + ABZR86_RS02025 0.36 -1.2
435,334 + ABZR86_RS02025 0.44 -1.6
435,335 - ABZR86_RS02025 0.44 -0.0
435,335 - ABZR86_RS02025 0.44 +0.9
435,335 - ABZR86_RS02025 0.44 -0.2
435,335 - ABZR86_RS02025 0.44 -1.0
435,335 - ABZR86_RS02025 0.44 +1.2
435,384 + ABZR86_RS02025 0.48 +0.9
435,616 + ABZR86_RS02025 0.68 +0.2
435,616 + ABZR86_RS02025 0.68 +0.3
435,616 + ABZR86_RS02025 0.68 -0.9
435,616 + ABZR86_RS02025 0.68 -1.9
435,616 + ABZR86_RS02025 0.68 -0.2
435,617 - ABZR86_RS02025 0.68 -0.0
435,617 - ABZR86_RS02025 0.68 +0.4
435,617 - ABZR86_RS02025 0.68 +0.3
435,621 - ABZR86_RS02025 0.68 -0.8
435,621 - ABZR86_RS02025 0.68 -0.5
435,651 + ABZR86_RS02025 0.71 -0.5
435,651 + ABZR86_RS02025 0.71 -0.7
435,651 + ABZR86_RS02025 0.71 +0.1
435,652 - ABZR86_RS02025 0.71 +0.9
435,652 - ABZR86_RS02025 0.71 -1.2
435,652 - ABZR86_RS02025 0.71 +0.2
435,652 - ABZR86_RS02025 0.71 -0.7
435,652 - ABZR86_RS02025 0.71 +0.8
435,652 - ABZR86_RS02025 0.71 -0.3
435,685 - ABZR86_RS02025 0.74 +0.2
435,791 - ABZR86_RS02025 0.83 -0.4
435,791 - ABZR86_RS02025 0.83 +0.5
435,791 - ABZR86_RS02025 0.83 +0.4
435,791 - ABZR86_RS02025 0.83 -0.7
435,833 + ABZR86_RS02025 0.86 +0.1
435,872 + ABZR86_RS02025 0.90 +0.2
435,872 + ABZR86_RS02025 0.90 +0.2
435,872 + ABZR86_RS02025 0.90 +0.2
435,873 - ABZR86_RS02025 0.90 -0.2
435,873 - ABZR86_RS02025 0.90 +0.4
435,873 - ABZR86_RS02025 0.90 +0.1
435,938 + -1.6
435,938 + -1.6
435,939 - -0.7
435,957 - -0.2
435,957 - +1.2
436,052 + +0.5
436,052 + -0.6
436,076 + -0.4
436,176 - +1.4
436,279 + +0.3
436,280 - +0.2
436,283 + -1.8
436,283 + +0.1
436,283 + -0.5
436,283 + +0.3
436,284 - -0.3
436,392 - +0.5
436,392 - +0.5
436,400 + +0.1
436,403 + +0.1
436,403 + +0.2
436,404 - -0.8
436,471 + -0.5
436,471 + +0.9
436,471 + +1.0
436,471 + +0.2
436,472 - -0.6
436,472 - +0.2
436,472 - +0.0
436,577 - +0.1
436,577 - +0.4
436,577 - +0.2
436,579 + +1.5
436,635 + -0.6
436,635 + +0.5
436,636 - +0.8
436,636 - -0.0
436,822 + ABZR86_RS02030 0.13 +0.2
436,822 + ABZR86_RS02030 0.13 +0.6
436,822 + ABZR86_RS02030 0.13 +0.3
436,823 - ABZR86_RS02030 0.14 -1.1
436,823 - ABZR86_RS02030 0.14 -0.8
436,823 - ABZR86_RS02030 0.14 -0.3
436,826 + ABZR86_RS02030 0.14 -0.0
436,827 - ABZR86_RS02030 0.14 -0.6
436,909 - ABZR86_RS02030 0.24 +1.1
436,957 - ABZR86_RS02030 0.30 -0.2
436,981 - ABZR86_RS02030 0.33 -0.2

Or see this region's nucleotide sequence