Experiment: Chloramphenicol 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01560 and ABZR86_RS01565 are separated by 134 nucleotides ABZR86_RS01565 and ABZR86_RS01570 are separated by 4 nucleotides ABZR86_RS01570 and ABZR86_RS01575 are separated by 29 nucleotides ABZR86_RS01575 and ABZR86_RS01580 are separated by 67 nucleotides
ABZR86_RS01560: ABZR86_RS01560 - GIY-YIG nuclease family protein, at 338,844 to 339,194
_RS01560
ABZR86_RS01565: ABZR86_RS01565 - hypothetical protein, at 339,329 to 339,631
_RS01565
ABZR86_RS01570: ABZR86_RS01570 - Ohr family peroxiredoxin, at 339,636 to 340,127
_RS01570
ABZR86_RS01575: ABZR86_RS01575 - cytochrome bc complex cytochrome b subunit, at 340,157 to 341,455
_RS01575
ABZR86_RS01580: ABZR86_RS01580 - SDR family oxidoreductase, at 341,523 to 342,284
_RS01580
Position (kb) 340
341
342 Strain fitness (log2 ratio) -2
-1
0
1 at 339.185 kb on + strand at 339.186 kb on + strand at 339.186 kb on + strand at 339.192 kb on + strand at 339.193 kb on - strand at 339.196 kb on + strand at 339.196 kb on + strand at 339.196 kb on + strand at 339.197 kb on - strand at 339.261 kb on + strand at 339.261 kb on + strand at 339.262 kb on - strand at 339.305 kb on + strand at 339.306 kb on - strand at 339.306 kb on - strand at 339.306 kb on - strand at 339.306 kb on - strand at 339.309 kb on + strand at 339.310 kb on - strand at 339.310 kb on - strand at 339.310 kb on - strand at 339.361 kb on + strand, within ABZR86_RS01565 at 339.705 kb on - strand, within ABZR86_RS01570 at 340.057 kb on + strand, within ABZR86_RS01570 at 340.058 kb on - strand, within ABZR86_RS01570 at 340.081 kb on + strand at 340.081 kb on + strand at 340.084 kb on + strand at 340.085 kb on - strand at 340.085 kb on - strand at 340.218 kb on + strand at 340.218 kb on + strand at 340.219 kb on - strand at 340.219 kb on - strand at 340.219 kb on - strand at 340.219 kb on - strand at 340.248 kb on + strand at 340.543 kb on - strand, within ABZR86_RS01575 at 340.650 kb on + strand, within ABZR86_RS01575 at 340.651 kb on - strand, within ABZR86_RS01575 at 340.713 kb on + strand, within ABZR86_RS01575 at 340.713 kb on + strand, within ABZR86_RS01575 at 340.714 kb on - strand, within ABZR86_RS01575 at 340.714 kb on - strand, within ABZR86_RS01575 at 340.714 kb on - strand, within ABZR86_RS01575 at 340.716 kb on + strand, within ABZR86_RS01575 at 340.717 kb on - strand, within ABZR86_RS01575 at 340.717 kb on - strand, within ABZR86_RS01575 at 340.834 kb on + strand, within ABZR86_RS01575 at 340.923 kb on + strand, within ABZR86_RS01575 at 341.034 kb on + strand, within ABZR86_RS01575 at 341.034 kb on + strand, within ABZR86_RS01575 at 341.061 kb on - strand, within ABZR86_RS01575 at 341.112 kb on + strand, within ABZR86_RS01575 at 341.121 kb on + strand, within ABZR86_RS01575 at 341.122 kb on - strand, within ABZR86_RS01575 at 341.122 kb on - strand, within ABZR86_RS01575 at 341.191 kb on - strand, within ABZR86_RS01575 at 341.191 kb on - strand, within ABZR86_RS01575 at 341.191 kb on - strand, within ABZR86_RS01575 at 341.268 kb on + strand, within ABZR86_RS01575 at 341.268 kb on + strand, within ABZR86_RS01575 at 341.340 kb on + strand at 341.367 kb on + strand at 341.371 kb on - strand at 341.379 kb on + strand at 341.441 kb on + strand at 341.442 kb on - strand at 341.656 kb on + strand, within ABZR86_RS01580 at 341.656 kb on + strand, within ABZR86_RS01580 at 341.656 kb on + strand, within ABZR86_RS01580 at 341.657 kb on - strand, within ABZR86_RS01580 at 341.965 kb on + strand, within ABZR86_RS01580 at 341.965 kb on + strand, within ABZR86_RS01580 at 342.330 kb on - strand at 342.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.012 mg/ml remove 339,185 + -1.1 339,186 + -0.2 339,186 + +0.5 339,192 + +0.3 339,193 - +0.2 339,196 + +0.4 339,196 + +0.9 339,196 + +0.3 339,197 - +0.4 339,261 + +0.0 339,261 + -0.0 339,262 - +0.2 339,305 + -0.3 339,306 - +0.5 339,306 - -0.4 339,306 - -0.6 339,306 - -0.2 339,309 + -1.0 339,310 - -0.2 339,310 - +0.5 339,310 - -0.0 339,361 + ABZR86_RS01565 0.11 -0.5 339,705 - ABZR86_RS01570 0.14 +0.1 340,057 + ABZR86_RS01570 0.86 -0.5 340,058 - ABZR86_RS01570 0.86 +0.5 340,081 + +0.5 340,081 + -0.4 340,084 + +1.2 340,085 - -0.9 340,085 - -2.2 340,218 + -1.4 340,218 + +0.1 340,219 - -0.6 340,219 - +0.7 340,219 - +0.2 340,219 - -0.6 340,248 + +0.9 340,543 - ABZR86_RS01575 0.30 -2.2 340,650 + ABZR86_RS01575 0.38 -0.1 340,651 - ABZR86_RS01575 0.38 +0.2 340,713 + ABZR86_RS01575 0.43 -0.9 340,713 + ABZR86_RS01575 0.43 +0.1 340,714 - ABZR86_RS01575 0.43 -0.4 340,714 - ABZR86_RS01575 0.43 +0.8 340,714 - ABZR86_RS01575 0.43 -0.3 340,716 + ABZR86_RS01575 0.43 -0.0 340,717 - ABZR86_RS01575 0.43 -0.5 340,717 - ABZR86_RS01575 0.43 +0.3 340,834 + ABZR86_RS01575 0.52 -0.4 340,923 + ABZR86_RS01575 0.59 -0.3 341,034 + ABZR86_RS01575 0.68 -1.9 341,034 + ABZR86_RS01575 0.68 -0.0 341,061 - ABZR86_RS01575 0.70 -0.3 341,112 + ABZR86_RS01575 0.74 +0.1 341,121 + ABZR86_RS01575 0.74 -0.5 341,122 - ABZR86_RS01575 0.74 +0.2 341,122 - ABZR86_RS01575 0.74 +1.0 341,191 - ABZR86_RS01575 0.80 -0.8 341,191 - ABZR86_RS01575 0.80 -1.9 341,191 - ABZR86_RS01575 0.80 +0.4 341,268 + ABZR86_RS01575 0.86 +0.1 341,268 + ABZR86_RS01575 0.86 -0.7 341,340 + -0.4 341,367 + +0.2 341,371 - +1.3 341,379 + +0.2 341,441 + +0.3 341,442 - +1.3 341,656 + ABZR86_RS01580 0.17 +0.4 341,656 + ABZR86_RS01580 0.17 -0.2 341,656 + ABZR86_RS01580 0.17 -1.4 341,657 - ABZR86_RS01580 0.18 +0.2 341,965 + ABZR86_RS01580 0.58 +0.6 341,965 + ABZR86_RS01580 0.58 +1.2 342,330 - -0.2 342,330 - +0.2
Or see this region's nucleotide sequence