Experiment: Chloramphenicol 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00775 and ABZR86_RS00780 are separated by 294 nucleotides ABZR86_RS00780 and ABZR86_RS00785 are separated by 125 nucleotides ABZR86_RS00785 and ABZR86_RS00790 are separated by 34 nucleotides ABZR86_RS00790 and ABZR86_RS00795 are separated by 85 nucleotides
ABZR86_RS00775: ABZR86_RS00775 - peroxiredoxin, at 152,527 to 152,988
_RS00775
ABZR86_RS00780: ABZR86_RS00780 - glycine cleavage system protein R, at 153,283 to 153,837
_RS00780
ABZR86_RS00785: ABZR86_RS00785 - 4-hydroxy-tetrahydrodipicolinate synthase, at 153,963 to 154,856
_RS00785
ABZR86_RS00790: ABZR86_RS00790 - hypothetical protein, at 154,891 to 155,487
_RS00790
ABZR86_RS00795: ABZR86_RS00795 - ferredoxin FdxA, at 155,573 to 155,896
_RS00795
Position (kb) 153
154
155 Strain fitness (log2 ratio) -2
-1
0
1 at 153.141 kb on - strand at 153.284 kb on + strand at 153.284 kb on + strand at 153.284 kb on + strand at 153.284 kb on + strand at 153.284 kb on + strand at 153.284 kb on + strand at 153.284 kb on + strand at 153.285 kb on - strand at 153.285 kb on - strand at 153.285 kb on - strand at 153.285 kb on - strand at 153.285 kb on - strand at 153.285 kb on - strand at 153.434 kb on + strand, within ABZR86_RS00780 at 153.539 kb on + strand, within ABZR86_RS00780 at 153.539 kb on + strand, within ABZR86_RS00780 at 153.539 kb on + strand, within ABZR86_RS00780 at 153.581 kb on + strand, within ABZR86_RS00780 at 153.581 kb on + strand, within ABZR86_RS00780 at 153.582 kb on - strand, within ABZR86_RS00780 at 153.582 kb on - strand, within ABZR86_RS00780 at 153.819 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.900 kb on + strand at 153.901 kb on - strand at 153.927 kb on + strand at 153.928 kb on - strand at 155.251 kb on + strand, within ABZR86_RS00790 at 155.251 kb on + strand, within ABZR86_RS00790 at 155.251 kb on + strand, within ABZR86_RS00790 at 155.251 kb on + strand, within ABZR86_RS00790 at 155.252 kb on - strand, within ABZR86_RS00790 at 155.253 kb on + strand, within ABZR86_RS00790 at 155.253 kb on + strand, within ABZR86_RS00790 at 155.253 kb on + strand, within ABZR86_RS00790 at 155.253 kb on + strand, within ABZR86_RS00790 at 155.254 kb on - strand, within ABZR86_RS00790 at 155.254 kb on - strand, within ABZR86_RS00790
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.012 mg/ml remove 153,141 - +0.9 153,284 + +0.2 153,284 + -1.3 153,284 + -0.5 153,284 + +0.5 153,284 + +1.2 153,284 + +0.5 153,284 + -0.2 153,285 - -0.3 153,285 - -1.5 153,285 - -0.1 153,285 - +0.3 153,285 - +0.9 153,285 - +0.5 153,434 + ABZR86_RS00780 0.27 -2.1 153,539 + ABZR86_RS00780 0.46 -2.2 153,539 + ABZR86_RS00780 0.46 +0.9 153,539 + ABZR86_RS00780 0.46 +0.4 153,581 + ABZR86_RS00780 0.54 -0.1 153,581 + ABZR86_RS00780 0.54 +0.4 153,582 - ABZR86_RS00780 0.54 -0.5 153,582 - ABZR86_RS00780 0.54 -0.4 153,819 + +0.5 153,900 + -0.0 153,900 + -0.0 153,900 + -0.2 153,900 + +0.3 153,900 + +0.4 153,900 + +0.9 153,900 + +0.1 153,901 - -0.1 153,927 + -0.1 153,928 - -0.3 155,251 + ABZR86_RS00790 0.60 +0.7 155,251 + ABZR86_RS00790 0.60 -1.4 155,251 + ABZR86_RS00790 0.60 -0.1 155,251 + ABZR86_RS00790 0.60 -1.5 155,252 - ABZR86_RS00790 0.60 +0.1 155,253 + ABZR86_RS00790 0.61 +0.5 155,253 + ABZR86_RS00790 0.61 -1.2 155,253 + ABZR86_RS00790 0.61 +0.5 155,253 + ABZR86_RS00790 0.61 +0.1 155,254 - ABZR86_RS00790 0.61 -0.9 155,254 - ABZR86_RS00790 0.61 -0.5
Or see this region's nucleotide sequence