Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00270

Experiment: Chloramphenicol 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS00265 and ABZR86_RS00270 are separated by 95 nucleotidesABZR86_RS00270 and ABZR86_RS00275 are separated by 63 nucleotides ABZR86_RS00265: ABZR86_RS00265 - PD40 domain-containing protein, at 47,231 to 48,214 _RS00265 ABZR86_RS00270: ABZR86_RS00270 - serine hydrolase, at 48,310 to 49,953 _RS00270 ABZR86_RS00275: ABZR86_RS00275 - alpha/beta hydrolase-fold protein, at 50,017 to 51,636 _RS00275 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2at 47.712 kb on - strand, within ABZR86_RS00265at 47.712 kb on - strand, within ABZR86_RS00265at 47.810 kb on + strand, within ABZR86_RS00265at 47.810 kb on + strand, within ABZR86_RS00265at 47.939 kb on + strand, within ABZR86_RS00265at 47.939 kb on + strand, within ABZR86_RS00265at 47.940 kb on - strand, within ABZR86_RS00265at 47.940 kb on - strand, within ABZR86_RS00265at 48.051 kb on - strand, within ABZR86_RS00265at 48.051 kb on - strand, within ABZR86_RS00265at 48.051 kb on - strand, within ABZR86_RS00265at 48.051 kb on - strand, within ABZR86_RS00265at 48.084 kb on - strand, within ABZR86_RS00265at 48.277 kb on + strandat 48.278 kb on - strandat 48.278 kb on - strandat 48.278 kb on - strandat 48.466 kb on + strandat 48.466 kb on + strandat 48.467 kb on - strandat 48.597 kb on + strand, within ABZR86_RS00270at 48.597 kb on + strand, within ABZR86_RS00270at 48.597 kb on + strand, within ABZR86_RS00270at 48.598 kb on - strand, within ABZR86_RS00270at 48.598 kb on - strand, within ABZR86_RS00270at 48.598 kb on - strand, within ABZR86_RS00270at 48.598 kb on - strand, within ABZR86_RS00270at 48.730 kb on + strand, within ABZR86_RS00270at 48.730 kb on + strand, within ABZR86_RS00270at 48.731 kb on - strand, within ABZR86_RS00270at 48.731 kb on - strand, within ABZR86_RS00270at 48.731 kb on - strand, within ABZR86_RS00270at 48.809 kb on - strand, within ABZR86_RS00270at 48.826 kb on + strand, within ABZR86_RS00270at 48.826 kb on + strand, within ABZR86_RS00270at 48.827 kb on - strand, within ABZR86_RS00270at 48.827 kb on - strand, within ABZR86_RS00270at 48.893 kb on - strand, within ABZR86_RS00270at 48.893 kb on - strand, within ABZR86_RS00270at 48.959 kb on - strand, within ABZR86_RS00270at 48.959 kb on - strand, within ABZR86_RS00270at 49.028 kb on - strand, within ABZR86_RS00270at 49.028 kb on - strand, within ABZR86_RS00270at 49.028 kb on - strand, within ABZR86_RS00270at 49.138 kb on + strand, within ABZR86_RS00270at 49.138 kb on + strand, within ABZR86_RS00270at 49.139 kb on - strand, within ABZR86_RS00270at 49.489 kb on + strand, within ABZR86_RS00270at 49.649 kb on - strand, within ABZR86_RS00270at 50.110 kb on + strandat 50.110 kb on + strandat 50.369 kb on - strand, within ABZR86_RS00275at 50.405 kb on - strand, within ABZR86_RS00275at 50.405 kb on - strand, within ABZR86_RS00275at 50.410 kb on + strand, within ABZR86_RS00275at 50.410 kb on + strand, within ABZR86_RS00275at 50.410 kb on + strand, within ABZR86_RS00275at 50.410 kb on + strand, within ABZR86_RS00275at 50.410 kb on + strand, within ABZR86_RS00275at 50.411 kb on - strand, within ABZR86_RS00275at 50.643 kb on + strand, within ABZR86_RS00275at 50.644 kb on - strand, within ABZR86_RS00275at 50.644 kb on - strand, within ABZR86_RS00275at 50.644 kb on - strand, within ABZR86_RS00275at 50.710 kb on + strand, within ABZR86_RS00275at 50.710 kb on + strand, within ABZR86_RS00275at 50.711 kb on - strand, within ABZR86_RS00275at 50.711 kb on - strand, within ABZR86_RS00275at 50.749 kb on + strand, within ABZR86_RS00275at 50.770 kb on + strand, within ABZR86_RS00275at 50.770 kb on + strand, within ABZR86_RS00275at 50.771 kb on - strand, within ABZR86_RS00275at 50.771 kb on - strand, within ABZR86_RS00275at 50.771 kb on - strand, within ABZR86_RS00275at 50.771 kb on - strand, within ABZR86_RS00275at 50.926 kb on + strand, within ABZR86_RS00275

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.012 mg/ml
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47,712 - ABZR86_RS00265 0.49 +0.1
47,712 - ABZR86_RS00265 0.49 +0.1
47,810 + ABZR86_RS00265 0.59 -0.2
47,810 + ABZR86_RS00265 0.59 +1.1
47,939 + ABZR86_RS00265 0.72 +0.1
47,939 + ABZR86_RS00265 0.72 +0.6
47,940 - ABZR86_RS00265 0.72 +0.2
47,940 - ABZR86_RS00265 0.72 -2.7
48,051 - ABZR86_RS00265 0.83 -0.8
48,051 - ABZR86_RS00265 0.83 -0.1
48,051 - ABZR86_RS00265 0.83 -0.1
48,051 - ABZR86_RS00265 0.83 -0.1
48,084 - ABZR86_RS00265 0.87 +0.4
48,277 + -1.3
48,278 - -0.9
48,278 - +0.9
48,278 - +1.2
48,466 + +0.5
48,466 + -1.1
48,467 - -1.0
48,597 + ABZR86_RS00270 0.17 -0.4
48,597 + ABZR86_RS00270 0.17 +0.4
48,597 + ABZR86_RS00270 0.17 +0.6
48,598 - ABZR86_RS00270 0.18 -0.7
48,598 - ABZR86_RS00270 0.18 +0.5
48,598 - ABZR86_RS00270 0.18 +1.1
48,598 - ABZR86_RS00270 0.18 +0.5
48,730 + ABZR86_RS00270 0.26 -0.1
48,730 + ABZR86_RS00270 0.26 +0.1
48,731 - ABZR86_RS00270 0.26 +1.1
48,731 - ABZR86_RS00270 0.26 +0.8
48,731 - ABZR86_RS00270 0.26 +0.9
48,809 - ABZR86_RS00270 0.30 +0.4
48,826 + ABZR86_RS00270 0.31 -0.1
48,826 + ABZR86_RS00270 0.31 +0.2
48,827 - ABZR86_RS00270 0.31 -0.5
48,827 - ABZR86_RS00270 0.31 +0.1
48,893 - ABZR86_RS00270 0.35 +0.4
48,893 - ABZR86_RS00270 0.35 +0.9
48,959 - ABZR86_RS00270 0.39 +0.4
48,959 - ABZR86_RS00270 0.39 -0.2
49,028 - ABZR86_RS00270 0.44 +1.1
49,028 - ABZR86_RS00270 0.44 +0.3
49,028 - ABZR86_RS00270 0.44 +0.3
49,138 + ABZR86_RS00270 0.50 -0.3
49,138 + ABZR86_RS00270 0.50 +0.1
49,139 - ABZR86_RS00270 0.50 +0.1
49,489 + ABZR86_RS00270 0.72 +0.1
49,649 - ABZR86_RS00270 0.81 +0.9
50,110 + -0.1
50,110 + -0.1
50,369 - ABZR86_RS00275 0.22 -0.1
50,405 - ABZR86_RS00275 0.24 +2.1
50,405 - ABZR86_RS00275 0.24 +0.6
50,410 + ABZR86_RS00275 0.24 +1.3
50,410 + ABZR86_RS00275 0.24 +1.2
50,410 + ABZR86_RS00275 0.24 -0.6
50,410 + ABZR86_RS00275 0.24 +0.4
50,410 + ABZR86_RS00275 0.24 +0.3
50,411 - ABZR86_RS00275 0.24 +0.3
50,643 + ABZR86_RS00275 0.39 +0.1
50,644 - ABZR86_RS00275 0.39 +0.1
50,644 - ABZR86_RS00275 0.39 +0.2
50,644 - ABZR86_RS00275 0.39 +0.3
50,710 + ABZR86_RS00275 0.43 +0.6
50,710 + ABZR86_RS00275 0.43 +0.8
50,711 - ABZR86_RS00275 0.43 +0.8
50,711 - ABZR86_RS00275 0.43 +0.4
50,749 + ABZR86_RS00275 0.45 +0.6
50,770 + ABZR86_RS00275 0.46 +0.8
50,770 + ABZR86_RS00275 0.46 -0.2
50,771 - ABZR86_RS00275 0.47 +0.8
50,771 - ABZR86_RS00275 0.47 +0.4
50,771 - ABZR86_RS00275 0.47 +0.6
50,771 - ABZR86_RS00275 0.47 +1.0
50,926 + ABZR86_RS00275 0.56 +0.9

Or see this region's nucleotide sequence