Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00050

Experiment: Chloramphenicol 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS00045 and ABZR86_RS00050 are separated by 252 nucleotidesABZR86_RS00050 and ABZR86_RS00055 are separated by 84 nucleotides ABZR86_RS00045: ABZR86_RS00045 - hypothetical protein, at 9,416 to 10,147 _RS00045 ABZR86_RS00050: ABZR86_RS00050 - AraC family transcriptional regulator, at 10,400 to 11,257 _RS00050 ABZR86_RS00055: ABZR86_RS00055 - M50 family metallopeptidase, at 11,342 to 12,484 _RS00055 Position (kb) 10 11 12Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 9.435 kb on + strandat 9.435 kb on + strandat 9.522 kb on + strand, within ABZR86_RS00045at 9.522 kb on + strand, within ABZR86_RS00045at 9.523 kb on - strand, within ABZR86_RS00045at 9.523 kb on - strand, within ABZR86_RS00045at 9.525 kb on + strand, within ABZR86_RS00045at 9.526 kb on - strand, within ABZR86_RS00045at 9.532 kb on - strand, within ABZR86_RS00045at 9.627 kb on + strand, within ABZR86_RS00045at 9.627 kb on + strand, within ABZR86_RS00045at 9.627 kb on + strand, within ABZR86_RS00045at 9.627 kb on + strand, within ABZR86_RS00045at 9.628 kb on - strand, within ABZR86_RS00045at 9.634 kb on - strand, within ABZR86_RS00045at 9.697 kb on - strand, within ABZR86_RS00045at 9.727 kb on - strand, within ABZR86_RS00045at 9.774 kb on + strand, within ABZR86_RS00045at 9.774 kb on + strand, within ABZR86_RS00045at 9.774 kb on + strand, within ABZR86_RS00045at 9.774 kb on + strand, within ABZR86_RS00045at 9.775 kb on - strand, within ABZR86_RS00045at 9.775 kb on - strand, within ABZR86_RS00045at 9.775 kb on - strand, within ABZR86_RS00045at 9.775 kb on - strand, within ABZR86_RS00045at 9.842 kb on + strand, within ABZR86_RS00045at 9.843 kb on - strand, within ABZR86_RS00045at 9.843 kb on - strand, within ABZR86_RS00045at 9.967 kb on - strand, within ABZR86_RS00045at 9.967 kb on - strand, within ABZR86_RS00045at 9.999 kb on + strand, within ABZR86_RS00045at 9.999 kb on + strand, within ABZR86_RS00045at 10.000 kb on - strand, within ABZR86_RS00045at 10.194 kb on + strandat 10.195 kb on - strandat 10.364 kb on - strandat 10.394 kb on - strandat 10.394 kb on - strandat 10.607 kb on + strand, within ABZR86_RS00050at 11.126 kb on - strand, within ABZR86_RS00050at 11.131 kb on + strand, within ABZR86_RS00050at 11.131 kb on + strand, within ABZR86_RS00050at 11.131 kb on + strand, within ABZR86_RS00050at 11.132 kb on - strand, within ABZR86_RS00050at 11.132 kb on - strand, within ABZR86_RS00050at 11.472 kb on + strand, within ABZR86_RS00055at 11.472 kb on + strand, within ABZR86_RS00055at 11.495 kb on + strand, within ABZR86_RS00055at 11.657 kb on + strand, within ABZR86_RS00055at 11.657 kb on + strand, within ABZR86_RS00055at 11.669 kb on + strand, within ABZR86_RS00055at 11.670 kb on - strand, within ABZR86_RS00055at 11.921 kb on + strand, within ABZR86_RS00055at 11.921 kb on + strand, within ABZR86_RS00055at 11.922 kb on - strand, within ABZR86_RS00055at 11.922 kb on - strand, within ABZR86_RS00055at 11.925 kb on + strand, within ABZR86_RS00055at 11.925 kb on + strand, within ABZR86_RS00055at 11.926 kb on - strand, within ABZR86_RS00055at 11.926 kb on - strand, within ABZR86_RS00055at 11.926 kb on - strand, within ABZR86_RS00055at 12.051 kb on - strand, within ABZR86_RS00055

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.012 mg/ml
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9,435 + -0.2
9,435 + +0.5
9,522 + ABZR86_RS00045 0.14 +0.5
9,522 + ABZR86_RS00045 0.14 +0.3
9,523 - ABZR86_RS00045 0.15 +0.2
9,523 - ABZR86_RS00045 0.15 +0.2
9,525 + ABZR86_RS00045 0.15 +1.2
9,526 - ABZR86_RS00045 0.15 +1.4
9,532 - ABZR86_RS00045 0.16 -0.5
9,627 + ABZR86_RS00045 0.29 +0.9
9,627 + ABZR86_RS00045 0.29 +1.3
9,627 + ABZR86_RS00045 0.29 +0.0
9,627 + ABZR86_RS00045 0.29 +1.1
9,628 - ABZR86_RS00045 0.29 +0.5
9,634 - ABZR86_RS00045 0.30 -0.6
9,697 - ABZR86_RS00045 0.38 +0.4
9,727 - ABZR86_RS00045 0.42 +0.2
9,774 + ABZR86_RS00045 0.49 -0.4
9,774 + ABZR86_RS00045 0.49 -0.2
9,774 + ABZR86_RS00045 0.49 -0.1
9,774 + ABZR86_RS00045 0.49 +0.6
9,775 - ABZR86_RS00045 0.49 -1.1
9,775 - ABZR86_RS00045 0.49 -0.3
9,775 - ABZR86_RS00045 0.49 +0.3
9,775 - ABZR86_RS00045 0.49 -0.3
9,842 + ABZR86_RS00045 0.58 +0.1
9,843 - ABZR86_RS00045 0.58 +2.4
9,843 - ABZR86_RS00045 0.58 -1.0
9,967 - ABZR86_RS00045 0.75 -0.3
9,967 - ABZR86_RS00045 0.75 +0.5
9,999 + ABZR86_RS00045 0.80 -0.3
9,999 + ABZR86_RS00045 0.80 -0.2
10,000 - ABZR86_RS00045 0.80 +0.2
10,194 + +1.1
10,195 - -0.2
10,364 - -0.1
10,394 - -0.9
10,394 - -0.2
10,607 + ABZR86_RS00050 0.24 -0.0
11,126 - ABZR86_RS00050 0.85 -0.2
11,131 + ABZR86_RS00050 0.85 -0.6
11,131 + ABZR86_RS00050 0.85 -1.2
11,131 + ABZR86_RS00050 0.85 +1.4
11,132 - ABZR86_RS00050 0.85 +0.4
11,132 - ABZR86_RS00050 0.85 +0.8
11,472 + ABZR86_RS00055 0.11 -0.2
11,472 + ABZR86_RS00055 0.11 -0.2
11,495 + ABZR86_RS00055 0.13 -0.4
11,657 + ABZR86_RS00055 0.28 +0.4
11,657 + ABZR86_RS00055 0.28 +0.1
11,669 + ABZR86_RS00055 0.29 +0.2
11,670 - ABZR86_RS00055 0.29 -3.1
11,921 + ABZR86_RS00055 0.51 -0.7
11,921 + ABZR86_RS00055 0.51 -0.1
11,922 - ABZR86_RS00055 0.51 -0.5
11,922 - ABZR86_RS00055 0.51 +0.1
11,925 + ABZR86_RS00055 0.51 -0.9
11,925 + ABZR86_RS00055 0.51 -0.2
11,926 - ABZR86_RS00055 0.51 +0.3
11,926 - ABZR86_RS00055 0.51 -0.7
11,926 - ABZR86_RS00055 0.51 +0.9
12,051 - ABZR86_RS00055 0.62 +1.6

Or see this region's nucleotide sequence