Experiment: Hyaluronic from Streptococcus equi (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0676 and BT0677 are separated by 121 nucleotides BT0677 and BT0678 are separated by 233 nucleotides BT0678 and BT0679 are separated by 13 nucleotides
BT0676: BT0676 - N-acetylglucosamine-6-phosphate deacetylase (NCBI ptt file), at 837,499 to 838,671
BT0676
BT0677: BT0677 - thioredoxin (TRX) (NCBI ptt file), at 838,793 to 839,152
BT0677
BT0678: BT0678 - cation efflux system protein czcC (NCBI ptt file), at 839,386 to 840,648
BT0678
BT0679: BT0679 - cation efflux system protein czcB (NCBI ptt file), at 840,662 to 841,798
BT0679
Position (kb) 839
840
841 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 838.399 kb on - strand, within BT0676 at 838.503 kb on + strand, within BT0676 at 838.582 kb on - strand at 838.589 kb on + strand at 838.956 kb on + strand, within BT0677 at 838.976 kb on - strand, within BT0677 at 838.976 kb on - strand, within BT0677 at 839.001 kb on - strand, within BT0677 at 839.001 kb on - strand, within BT0677 at 839.009 kb on + strand, within BT0677 at 839.524 kb on + strand, within BT0678 at 839.555 kb on + strand, within BT0678 at 839.556 kb on - strand, within BT0678 at 839.600 kb on - strand, within BT0678 at 839.627 kb on - strand, within BT0678 at 840.273 kb on - strand, within BT0678 at 840.313 kb on - strand, within BT0678 at 840.401 kb on - strand, within BT0678 at 840.403 kb on - strand, within BT0678 at 840.403 kb on - strand, within BT0678 at 840.539 kb on - strand at 840.548 kb on - strand at 840.549 kb on + strand at 840.572 kb on - strand at 840.616 kb on - strand at 840.636 kb on - strand at 840.649 kb on + strand at 840.802 kb on - strand, within BT0679 at 840.865 kb on - strand, within BT0679 at 841.099 kb on + strand, within BT0679 at 841.376 kb on - strand, within BT0679
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi (C) remove 838,399 - BT0676 0.77 -0.4 838,503 + BT0676 0.86 +2.4 838,582 - -6.3 838,589 + -0.7 838,956 + BT0677 0.45 -1.0 838,976 - BT0677 0.51 +0.9 838,976 - BT0677 0.51 +0.6 839,001 - BT0677 0.58 -2.0 839,001 - BT0677 0.58 +1.0 839,009 + BT0677 0.60 -0.7 839,524 + BT0678 0.11 -1.0 839,555 + BT0678 0.13 +0.0 839,556 - BT0678 0.13 -1.6 839,600 - BT0678 0.17 +0.0 839,627 - BT0678 0.19 -2.1 840,273 - BT0678 0.70 -0.9 840,313 - BT0678 0.73 -1.4 840,401 - BT0678 0.80 -1.1 840,403 - BT0678 0.81 -1.4 840,403 - BT0678 0.81 -0.7 840,539 - -0.9 840,548 - -1.0 840,549 + -0.7 840,572 - -1.2 840,616 - -0.8 840,636 - -0.2 840,649 + -2.0 840,802 - BT0679 0.12 +0.1 840,865 - BT0679 0.18 +0.6 841,099 + BT0679 0.38 -0.3 841,376 - BT0679 0.63 +1.6
Or see this region's nucleotide sequence