Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2611

Experiment: nitrate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_2609 and cobA overlap by 4 nucleotidescobA and Synpcc7942_2611 are separated by 42 nucleotidesSynpcc7942_2611 and thrC are separated by 70 nucleotides Synpcc7942_2609: Synpcc7942_2609 - hypothetical protein, at 2,691,626 to 2,692,156 _2609 Synpcc7942_2610: cobA - uroporphyrin-III C-methyltransferase, at 2,692,153 to 2,692,950 cobA Synpcc7942_2611: Synpcc7942_2611 - hypothetical protein, at 2,692,993 to 2,693,757 _2611 Synpcc7942_2612: thrC - threonine synthase, at 2,693,828 to 2,694,928 thrC Position (kb) 2692 2693 2694Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2692.118 kb on + strandat 2692.123 kb on + strandat 2692.123 kb on + strandat 2692.145 kb on - strandat 2692.145 kb on - strandat 2692.145 kb on - strandat 2692.146 kb on + strandat 2692.146 kb on + strandat 2692.146 kb on + strandat 2692.216 kb on - strandat 2692.944 kb on + strandat 2693.014 kb on + strandat 2693.697 kb on + strandat 2693.697 kb on + strandat 2693.697 kb on + strandat 2693.705 kb on - strandat 2693.705 kb on - strandat 2693.705 kb on - strandat 2693.705 kb on - strandat 2693.705 kb on - strandat 2693.720 kb on + strandat 2693.728 kb on - strandat 2693.728 kb on - strandat 2693.737 kb on + strandat 2693.750 kb on - strandat 2693.750 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate 50 mM
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2,692,118 + +0.9
2,692,123 + +0.9
2,692,123 + -0.1
2,692,145 - -1.1
2,692,145 - +2.9
2,692,145 - +1.9
2,692,146 + -3.3
2,692,146 + -2.7
2,692,146 + +2.6
2,692,216 - +1.9
2,692,944 + -0.5
2,693,014 + -2.1
2,693,697 + +5.1
2,693,697 + +1.4
2,693,697 + +3.0
2,693,705 - -1.1
2,693,705 - -1.7
2,693,705 - -0.1
2,693,705 - -1.1
2,693,705 - +3.3
2,693,720 + -1.1
2,693,728 - -2.1
2,693,728 - +0.9
2,693,737 + -1.1
2,693,750 - +1.5
2,693,750 - +3.5

Or see this region's nucleotide sequence