Experiment: nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sphS and sphR are separated by 12 nucleotides sphR and Synpcc7942_1013 are separated by 646 nucleotides Synpcc7942_1013 and Synpcc7942_1014 are separated by 3 nucleotides
Synpcc7942_1011: sphS - PAS/PAC sensor signal transduction histidine kinase, at 1,022,715 to 1,023,956
sphS
Synpcc7942_1012: sphR - two component transcriptional regulator, winged helix family, at 1,023,969 to 1,024,742
sphR
Synpcc7942_1013: Synpcc7942_1013 - hypothetical protein, at 1,025,389 to 1,025,625
_1013
Synpcc7942_1014: Synpcc7942_1014 - CheA signal transduction histidine kinase, at 1,025,629 to 1,028,415
_1014
Position (kb) 1023
1024
1025 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 1022.978 kb on + strand, within sphS at 1022.978 kb on + strand, within sphS at 1022.981 kb on - strand, within sphS at 1022.981 kb on - strand, within sphS at 1022.986 kb on - strand, within sphS at 1022.991 kb on + strand, within sphS at 1023.006 kb on + strand, within sphS at 1023.014 kb on - strand, within sphS at 1023.014 kb on - strand, within sphS at 1023.026 kb on + strand at 1023.026 kb on + strand, within sphS at 1023.032 kb on + strand, within sphS at 1023.032 kb on + strand, within sphS at 1023.040 kb on - strand, within sphS at 1023.040 kb on - strand, within sphS at 1023.045 kb on - strand, within sphS at 1023.133 kb on - strand, within sphS at 1023.138 kb on - strand at 1023.140 kb on - strand, within sphS at 1023.145 kb on - strand, within sphS at 1023.154 kb on + strand, within sphS at 1023.180 kb on - strand, within sphS at 1023.185 kb on + strand, within sphS at 1023.185 kb on + strand, within sphS at 1023.185 kb on + strand at 1023.185 kb on + strand, within sphS at 1023.193 kb on - strand, within sphS at 1023.193 kb on - strand, within sphS at 1023.193 kb on - strand, within sphS at 1023.201 kb on - strand, within sphS at 1023.223 kb on - strand, within sphS at 1023.225 kb on + strand, within sphS at 1023.261 kb on - strand, within sphS at 1023.272 kb on + strand, within sphS at 1023.273 kb on + strand, within sphS at 1023.281 kb on - strand, within sphS at 1023.337 kb on + strand, within sphS at 1023.374 kb on + strand, within sphS at 1023.384 kb on - strand, within sphS at 1023.460 kb on + strand, within sphS at 1023.462 kb on + strand, within sphS at 1023.462 kb on + strand, within sphS at 1023.465 kb on - strand, within sphS at 1023.494 kb on - strand, within sphS at 1023.506 kb on - strand, within sphS at 1023.528 kb on + strand, within sphS at 1023.528 kb on + strand, within sphS at 1023.528 kb on + strand, within sphS at 1023.528 kb on + strand, within sphS at 1023.528 kb on + strand, within sphS at 1023.536 kb on - strand, within sphS at 1023.536 kb on - strand, within sphS at 1023.536 kb on - strand, within sphS at 1023.541 kb on - strand, within sphS at 1023.547 kb on - strand, within sphS at 1023.554 kb on + strand, within sphS at 1023.554 kb on + strand, within sphS at 1023.567 kb on - strand, within sphS at 1023.574 kb on + strand, within sphS at 1023.593 kb on - strand, within sphS at 1023.619 kb on - strand, within sphS at 1023.621 kb on - strand, within sphS at 1023.650 kb on + strand, within sphS at 1023.668 kb on + strand, within sphS at 1023.668 kb on + strand, within sphS at 1023.668 kb on + strand, within sphS at 1023.675 kb on - strand, within sphS at 1023.675 kb on - strand, within sphS at 1023.684 kb on + strand, within sphS at 1023.685 kb on + strand, within sphS at 1023.705 kb on + strand, within sphS at 1023.844 kb on + strand at 1023.848 kb on - strand at 1023.849 kb on + strand at 1023.876 kb on - strand at 1023.889 kb on + strand at 1023.899 kb on - strand at 1023.914 kb on + strand at 1023.916 kb on - strand at 1023.916 kb on - strand at 1023.965 kb on - strand at 1023.971 kb on + strand at 1023.971 kb on + strand at 1023.983 kb on + strand at 1023.998 kb on - strand at 1024.009 kb on + strand at 1024.029 kb on + strand at 1024.038 kb on - strand at 1024.099 kb on + strand, within sphR at 1024.160 kb on + strand, within sphR at 1024.168 kb on - strand, within sphR at 1024.246 kb on - strand, within sphR at 1024.291 kb on - strand, within sphR at 1024.291 kb on - strand, within sphR at 1024.291 kb on - strand, within sphR at 1024.301 kb on - strand, within sphR at 1024.304 kb on - strand, within sphR at 1024.306 kb on + strand, within sphR at 1024.306 kb on + strand, within sphR at 1024.312 kb on - strand, within sphR at 1024.336 kb on - strand, within sphR at 1024.404 kb on - strand, within sphR at 1024.411 kb on - strand, within sphR at 1024.411 kb on - strand, within sphR at 1024.430 kb on + strand, within sphR at 1024.430 kb on + strand, within sphR at 1024.470 kb on + strand at 1024.478 kb on - strand, within sphR at 1024.486 kb on - strand, within sphR at 1024.488 kb on + strand, within sphR at 1024.493 kb on + strand, within sphR at 1024.501 kb on - strand, within sphR at 1024.515 kb on + strand, within sphR at 1024.536 kb on - strand, within sphR at 1024.560 kb on + strand, within sphR at 1024.568 kb on + strand, within sphR at 1024.576 kb on - strand, within sphR at 1024.616 kb on + strand, within sphR at 1024.658 kb on + strand, within sphR at 1024.658 kb on + strand, within sphR at 1024.659 kb on + strand, within sphR at 1024.666 kb on - strand at 1024.721 kb on + strand at 1024.730 kb on + strand at 1024.730 kb on + strand at 1024.730 kb on + strand at 1024.738 kb on - strand at 1024.738 kb on - strand at 1024.756 kb on + strand at 1024.758 kb on - strand at 1024.758 kb on - strand at 1024.764 kb on + strand at 1024.766 kb on + strand at 1024.766 kb on + strand at 1024.774 kb on + strand at 1024.782 kb on - strand at 1024.782 kb on - strand at 1024.798 kb on + strand at 1024.800 kb on + strand at 1024.813 kb on + strand at 1024.815 kb on - strand at 1024.821 kb on - strand at 1024.822 kb on - strand at 1024.827 kb on + strand at 1024.859 kb on + strand at 1024.906 kb on - strand at 1024.915 kb on - strand at 1025.013 kb on + strand at 1025.013 kb on + strand at 1025.021 kb on - strand at 1025.082 kb on - strand at 1025.115 kb on - strand at 1025.127 kb on + strand at 1025.151 kb on - strand at 1025.156 kb on + strand at 1025.156 kb on + strand at 1025.156 kb on + strand at 1025.156 kb on + strand at 1025.164 kb on - strand at 1025.164 kb on - strand at 1025.166 kb on + strand at 1025.166 kb on + strand at 1025.190 kb on + strand at 1025.213 kb on - strand at 1025.215 kb on + strand at 1025.372 kb on + strand at 1025.475 kb on + strand, within Synpcc7942_1013 at 1025.535 kb on + strand, within Synpcc7942_1013 at 1025.635 kb on - strand at 1025.682 kb on + strand at 1025.708 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 50 mM remove 1,022,978 + sphS Synpcc7942_1011 0.21 -0.1 1,022,978 + sphS Synpcc7942_1011 0.21 +3.2 1,022,981 - sphS Synpcc7942_1011 0.21 +2.0 1,022,981 - sphS Synpcc7942_1011 0.21 +1.3 1,022,986 - sphS Synpcc7942_1011 0.22 +2.7 1,022,991 + sphS Synpcc7942_1011 0.22 -0.9 1,023,006 + sphS Synpcc7942_1011 0.23 +0.5 1,023,014 - sphS Synpcc7942_1011 0.24 +1.8 1,023,014 - sphS Synpcc7942_1011 0.24 +2.7 1,023,026 + -0.1 1,023,026 + sphS Synpcc7942_1011 0.25 +2.9 1,023,032 + sphS Synpcc7942_1011 0.26 +1.0 1,023,032 + sphS Synpcc7942_1011 0.26 -0.1 1,023,040 - sphS Synpcc7942_1011 0.26 +0.9 1,023,040 - sphS Synpcc7942_1011 0.26 -1.1 1,023,045 - sphS Synpcc7942_1011 0.27 +0.9 1,023,133 - sphS Synpcc7942_1011 0.34 -0.1 1,023,138 - -1.1 1,023,140 - sphS Synpcc7942_1011 0.34 -0.1 1,023,145 - sphS Synpcc7942_1011 0.35 +4.2 1,023,154 + sphS Synpcc7942_1011 0.35 +1.4 1,023,180 - sphS Synpcc7942_1011 0.37 +0.6 1,023,185 + sphS Synpcc7942_1011 0.38 -1.1 1,023,185 + sphS Synpcc7942_1011 0.38 +3.4 1,023,185 + -0.1 1,023,185 + sphS Synpcc7942_1011 0.38 +0.7 1,023,193 - sphS Synpcc7942_1011 0.38 -0.1 1,023,193 - sphS Synpcc7942_1011 0.38 -1.7 1,023,193 - sphS Synpcc7942_1011 0.38 +2.6 1,023,201 - sphS Synpcc7942_1011 0.39 +3.7 1,023,223 - sphS Synpcc7942_1011 0.41 +2.7 1,023,225 + sphS Synpcc7942_1011 0.41 +2.4 1,023,261 - sphS Synpcc7942_1011 0.44 +3.7 1,023,272 + sphS Synpcc7942_1011 0.45 -0.7 1,023,273 + sphS Synpcc7942_1011 0.45 +2.8 1,023,281 - sphS Synpcc7942_1011 0.46 +2.3 1,023,337 + sphS Synpcc7942_1011 0.50 +0.6 1,023,374 + sphS Synpcc7942_1011 0.53 +0.8 1,023,384 - sphS Synpcc7942_1011 0.54 -1.1 1,023,460 + sphS Synpcc7942_1011 0.60 +2.0 1,023,462 + sphS Synpcc7942_1011 0.60 -0.1 1,023,462 + sphS Synpcc7942_1011 0.60 +3.9 1,023,465 - sphS Synpcc7942_1011 0.60 -0.9 1,023,494 - sphS Synpcc7942_1011 0.63 -1.1 1,023,506 - sphS Synpcc7942_1011 0.64 +2.2 1,023,528 + sphS Synpcc7942_1011 0.65 +2.5 1,023,528 + sphS Synpcc7942_1011 0.65 +2.9 1,023,528 + sphS Synpcc7942_1011 0.65 +3.0 1,023,528 + sphS Synpcc7942_1011 0.65 +1.5 1,023,528 + sphS Synpcc7942_1011 0.65 -2.1 1,023,536 - sphS Synpcc7942_1011 0.66 -2.1 1,023,536 - sphS Synpcc7942_1011 0.66 -2.1 1,023,536 - sphS Synpcc7942_1011 0.66 -1.1 1,023,541 - sphS Synpcc7942_1011 0.67 +1.9 1,023,547 - sphS Synpcc7942_1011 0.67 +0.5 1,023,554 + sphS Synpcc7942_1011 0.68 -0.1 1,023,554 + sphS Synpcc7942_1011 0.68 +1.4 1,023,567 - sphS Synpcc7942_1011 0.69 +0.9 1,023,574 + sphS Synpcc7942_1011 0.69 +1.7 1,023,593 - sphS Synpcc7942_1011 0.71 +1.9 1,023,619 - sphS Synpcc7942_1011 0.73 +2.8 1,023,621 - sphS Synpcc7942_1011 0.73 +0.8 1,023,650 + sphS Synpcc7942_1011 0.75 -0.1 1,023,668 + sphS Synpcc7942_1011 0.77 +3.0 1,023,668 + sphS Synpcc7942_1011 0.77 -1.1 1,023,668 + sphS Synpcc7942_1011 0.77 -1.1 1,023,675 - sphS Synpcc7942_1011 0.77 -2.1 1,023,675 - sphS Synpcc7942_1011 0.77 +1.4 1,023,684 + sphS Synpcc7942_1011 0.78 +1.4 1,023,685 + sphS Synpcc7942_1011 0.78 +5.0 1,023,705 + sphS Synpcc7942_1011 0.80 +2.9 1,023,844 + -1.1 1,023,848 - +1.8 1,023,849 + -0.7 1,023,876 - +0.3 1,023,889 + +3.0 1,023,899 - -0.1 1,023,914 + -1.1 1,023,916 - -1.1 1,023,916 - +3.6 1,023,965 - +2.9 1,023,971 + -2.1 1,023,971 + +1.2 1,023,983 + +1.7 1,023,998 - +0.9 1,024,009 + +1.2 1,024,029 + +0.4 1,024,038 - +1.5 1,024,099 + sphR Synpcc7942_1012 0.17 +2.5 1,024,160 + sphR Synpcc7942_1012 0.25 -1.1 1,024,168 - sphR Synpcc7942_1012 0.26 -1.1 1,024,246 - sphR Synpcc7942_1012 0.36 +2.3 1,024,291 - sphR Synpcc7942_1012 0.42 -1.1 1,024,291 - sphR Synpcc7942_1012 0.42 +2.5 1,024,291 - sphR Synpcc7942_1012 0.42 -1.1 1,024,301 - sphR Synpcc7942_1012 0.43 -2.1 1,024,304 - sphR Synpcc7942_1012 0.43 +0.6 1,024,306 + sphR Synpcc7942_1012 0.44 +2.5 1,024,306 + sphR Synpcc7942_1012 0.44 -3.5 1,024,312 - sphR Synpcc7942_1012 0.44 -1.7 1,024,336 - sphR Synpcc7942_1012 0.47 +1.6 1,024,404 - sphR Synpcc7942_1012 0.56 +3.8 1,024,411 - sphR Synpcc7942_1012 0.57 +2.7 1,024,411 - sphR Synpcc7942_1012 0.57 -0.1 1,024,430 + sphR Synpcc7942_1012 0.60 -1.1 1,024,430 + sphR Synpcc7942_1012 0.60 +1.6 1,024,470 + -1.1 1,024,478 - sphR Synpcc7942_1012 0.66 +0.9 1,024,486 - sphR Synpcc7942_1012 0.67 +0.7 1,024,488 + sphR Synpcc7942_1012 0.67 +1.4 1,024,493 + sphR Synpcc7942_1012 0.68 +2.9 1,024,501 - sphR Synpcc7942_1012 0.69 +0.1 1,024,515 + sphR Synpcc7942_1012 0.71 +0.9 1,024,536 - sphR Synpcc7942_1012 0.73 -1.5 1,024,560 + sphR Synpcc7942_1012 0.76 +0.7 1,024,568 + sphR Synpcc7942_1012 0.77 -1.1 1,024,576 - sphR Synpcc7942_1012 0.78 -1.1 1,024,616 + sphR Synpcc7942_1012 0.84 +4.3 1,024,658 + sphR Synpcc7942_1012 0.89 +2.5 1,024,658 + sphR Synpcc7942_1012 0.89 +3.8 1,024,659 + sphR Synpcc7942_1012 0.89 +0.9 1,024,666 - -2.1 1,024,721 + +1.4 1,024,730 + +3.0 1,024,730 + -3.1 1,024,730 + -2.5 1,024,738 - -0.1 1,024,738 - -1.1 1,024,756 + +1.9 1,024,758 - +2.6 1,024,758 - +3.5 1,024,764 + +0.4 1,024,766 + -3.5 1,024,766 + +3.3 1,024,774 + +2.9 1,024,782 - +1.7 1,024,782 - -1.1 1,024,798 + +2.5 1,024,800 + -1.1 1,024,813 + +2.1 1,024,815 - +0.2 1,024,821 - -1.1 1,024,822 - +3.9 1,024,827 + -1.1 1,024,859 + -0.1 1,024,906 - +2.1 1,024,915 - -0.1 1,025,013 + +1.1 1,025,013 + -1.7 1,025,021 - +3.8 1,025,082 - +2.2 1,025,115 - +4.9 1,025,127 + +4.0 1,025,151 - -0.1 1,025,156 + -1.7 1,025,156 + +2.4 1,025,156 + +2.3 1,025,156 + +1.1 1,025,164 - +4.6 1,025,164 - +2.6 1,025,166 + +2.9 1,025,166 + -1.1 1,025,190 + +1.8 1,025,213 - -1.7 1,025,215 + +2.7 1,025,372 + +2.0 1,025,475 + Synpcc7942_1013 0.36 +3.5 1,025,535 + Synpcc7942_1013 0.62 +1.3 1,025,635 - +2.4 1,025,682 + +1.6 1,025,708 + +5.2
Or see this region's nucleotide sequence