Experiment: nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt psbB and Synpcc7942_0698 are separated by 336 nucleotides Synpcc7942_0698 and psbM are separated by 99 nucleotides psbM and Synpcc7942_0700 are separated by 97 nucleotides
Synpcc7942_0697: psbB - photosystem II core light harvesting protein, at 689,222 to 690,748
psbB
Synpcc7942_0698: Synpcc7942_0698 - probable ferredoxin, at 691,085 to 691,519
_0698
Synpcc7942_0699: psbM - photosystem II reaction center protein PsbM, at 691,619 to 691,726
psbM
Synpcc7942_0700: Synpcc7942_0700 - hypothetical protein, at 691,824 to 692,744
_0700
Position (kb) 691
692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 690.832 kb on - strand at 690.849 kb on - strand at 690.855 kb on + strand at 690.885 kb on + strand at 690.910 kb on - strand at 690.914 kb on - strand at 690.919 kb on - strand at 690.929 kb on - strand at 690.955 kb on - strand at 690.994 kb on + strand at 691.000 kb on - strand at 691.000 kb on - strand at 691.005 kb on - strand at 691.014 kb on - strand at 691.014 kb on - strand at 691.073 kb on - strand at 691.075 kb on + strand at 691.075 kb on + strand at 691.075 kb on + strand at 691.083 kb on - strand at 691.083 kb on - strand at 691.083 kb on - strand at 691.126 kb on - strand at 691.128 kb on - strand at 691.128 kb on - strand at 691.137 kb on + strand, within Synpcc7942_0698 at 691.150 kb on + strand, within Synpcc7942_0698 at 691.150 kb on + strand, within Synpcc7942_0698 at 691.165 kb on + strand at 691.168 kb on - strand, within Synpcc7942_0698 at 691.168 kb on - strand, within Synpcc7942_0698 at 691.177 kb on + strand, within Synpcc7942_0698 at 691.177 kb on + strand, within Synpcc7942_0698 at 691.185 kb on - strand, within Synpcc7942_0698 at 691.185 kb on - strand at 691.186 kb on - strand, within Synpcc7942_0698 at 691.217 kb on - strand at 691.239 kb on - strand, within Synpcc7942_0698 at 691.258 kb on - strand, within Synpcc7942_0698 at 691.291 kb on - strand, within Synpcc7942_0698 at 691.292 kb on - strand at 691.294 kb on + strand, within Synpcc7942_0698 at 691.302 kb on - strand, within Synpcc7942_0698 at 691.306 kb on + strand, within Synpcc7942_0698 at 691.312 kb on + strand, within Synpcc7942_0698 at 691.320 kb on - strand, within Synpcc7942_0698 at 691.333 kb on - strand, within Synpcc7942_0698 at 691.348 kb on + strand, within Synpcc7942_0698 at 691.369 kb on + strand, within Synpcc7942_0698 at 691.381 kb on + strand, within Synpcc7942_0698 at 691.417 kb on + strand, within Synpcc7942_0698 at 691.417 kb on + strand, within Synpcc7942_0698 at 691.417 kb on + strand, within Synpcc7942_0698 at 691.425 kb on - strand, within Synpcc7942_0698 at 691.425 kb on - strand, within Synpcc7942_0698 at 691.475 kb on + strand, within Synpcc7942_0698 at 691.485 kb on + strand at 691.506 kb on - strand at 691.516 kb on - strand at 691.522 kb on - strand at 691.549 kb on + strand at 691.557 kb on - strand at 691.566 kb on + strand at 691.567 kb on - strand at 691.603 kb on - strand at 691.611 kb on + strand at 691.733 kb on + strand at 691.829 kb on - strand at 691.847 kb on + strand at 691.847 kb on - strand at 691.847 kb on - strand at 691.883 kb on + strand at 691.920 kb on + strand, within Synpcc7942_0700 at 691.990 kb on + strand, within Synpcc7942_0700 at 692.006 kb on - strand, within Synpcc7942_0700 at 692.065 kb on + strand, within Synpcc7942_0700 at 692.192 kb on - strand, within Synpcc7942_0700 at 692.193 kb on + strand, within Synpcc7942_0700 at 692.193 kb on + strand, within Synpcc7942_0700 at 692.193 kb on + strand, within Synpcc7942_0700 at 692.203 kb on + strand, within Synpcc7942_0700 at 692.203 kb on + strand, within Synpcc7942_0700 at 692.233 kb on - strand, within Synpcc7942_0700 at 692.243 kb on - strand, within Synpcc7942_0700 at 692.256 kb on - strand, within Synpcc7942_0700 at 692.273 kb on + strand, within Synpcc7942_0700 at 692.291 kb on + strand, within Synpcc7942_0700 at 692.300 kb on + strand, within Synpcc7942_0700 at 692.339 kb on + strand, within Synpcc7942_0700 at 692.339 kb on + strand, within Synpcc7942_0700 at 692.339 kb on + strand, within Synpcc7942_0700 at 692.339 kb on + strand, within Synpcc7942_0700 at 692.347 kb on - strand, within Synpcc7942_0700 at 692.357 kb on - strand, within Synpcc7942_0700 at 692.374 kb on + strand, within Synpcc7942_0700 at 692.429 kb on + strand, within Synpcc7942_0700 at 692.434 kb on + strand, within Synpcc7942_0700 at 692.434 kb on + strand, within Synpcc7942_0700 at 692.434 kb on + strand, within Synpcc7942_0700 at 692.434 kb on + strand, within Synpcc7942_0700 at 692.434 kb on + strand, within Synpcc7942_0700 at 692.437 kb on - strand, within Synpcc7942_0700 at 692.486 kb on - strand, within Synpcc7942_0700
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 50 mM remove 690,832 - -0.2 690,849 - -0.2 690,855 + -1.8 690,885 + +0.9 690,910 - -1.8 690,914 - +3.7 690,919 - +1.9 690,929 - +3.7 690,955 - -1.2 690,994 + +3.4 691,000 - +1.7 691,000 - -0.8 691,005 - -2.2 691,014 - -0.8 691,014 - +2.9 691,073 - -1.8 691,075 + -0.2 691,075 + -0.5 691,075 + +1.9 691,083 - +3.7 691,083 - -3.0 691,083 - -0.2 691,126 - -3.0 691,128 - -0.2 691,128 - -0.2 691,137 + Synpcc7942_0698 0.12 +2.2 691,150 + Synpcc7942_0698 0.15 +2.8 691,150 + Synpcc7942_0698 0.15 -1.2 691,165 + -0.2 691,168 - Synpcc7942_0698 0.19 +0.4 691,168 - Synpcc7942_0698 0.19 +0.8 691,177 + Synpcc7942_0698 0.21 +3.1 691,177 + Synpcc7942_0698 0.21 +1.3 691,185 - Synpcc7942_0698 0.23 +6.3 691,185 - -0.2 691,186 - Synpcc7942_0698 0.23 +3.9 691,217 - +1.4 691,239 - Synpcc7942_0698 0.35 +4.7 691,258 - Synpcc7942_0698 0.40 +1.1 691,291 - Synpcc7942_0698 0.47 +3.2 691,292 - +2.4 691,294 + Synpcc7942_0698 0.48 +3.1 691,302 - Synpcc7942_0698 0.50 +3.7 691,306 + Synpcc7942_0698 0.51 -3.0 691,312 + Synpcc7942_0698 0.52 -0.2 691,320 - Synpcc7942_0698 0.54 +1.8 691,333 - Synpcc7942_0698 0.57 +2.1 691,348 + Synpcc7942_0698 0.60 -1.2 691,369 + Synpcc7942_0698 0.65 +0.4 691,381 + Synpcc7942_0698 0.68 +5.2 691,417 + Synpcc7942_0698 0.76 +3.6 691,417 + Synpcc7942_0698 0.76 -1.2 691,417 + Synpcc7942_0698 0.76 +3.3 691,425 - Synpcc7942_0698 0.78 -0.0 691,425 - Synpcc7942_0698 0.78 -0.2 691,475 + Synpcc7942_0698 0.90 +1.4 691,485 + +4.4 691,506 - +2.7 691,516 - +2.1 691,522 - +0.8 691,549 + -3.5 691,557 - -1.2 691,566 + +2.5 691,567 - +0.8 691,603 - -1.8 691,611 + -0.2 691,733 + +2.1 691,829 - -0.2 691,847 + +1.4 691,847 - -0.2 691,847 - -3.5 691,883 + -1.2 691,920 + Synpcc7942_0700 0.10 +0.3 691,990 + Synpcc7942_0700 0.18 -1.2 692,006 - Synpcc7942_0700 0.20 +0.2 692,065 + Synpcc7942_0700 0.26 +0.5 692,192 - Synpcc7942_0700 0.40 -0.0 692,193 + Synpcc7942_0700 0.40 -2.2 692,193 + Synpcc7942_0700 0.40 -1.2 692,193 + Synpcc7942_0700 0.40 +1.4 692,203 + Synpcc7942_0700 0.41 -2.2 692,203 + Synpcc7942_0700 0.41 +2.6 692,233 - Synpcc7942_0700 0.44 +2.2 692,243 - Synpcc7942_0700 0.45 -1.2 692,256 - Synpcc7942_0700 0.47 -1.2 692,273 + Synpcc7942_0700 0.49 -1.2 692,291 + Synpcc7942_0700 0.51 +1.6 692,300 + Synpcc7942_0700 0.52 +2.8 692,339 + Synpcc7942_0700 0.56 +2.8 692,339 + Synpcc7942_0700 0.56 +1.3 692,339 + Synpcc7942_0700 0.56 +2.6 692,339 + Synpcc7942_0700 0.56 +2.0 692,347 - Synpcc7942_0700 0.57 +1.4 692,357 - Synpcc7942_0700 0.58 -1.2 692,374 + Synpcc7942_0700 0.60 -0.2 692,429 + Synpcc7942_0700 0.66 +2.4 692,434 + Synpcc7942_0700 0.66 +2.1 692,434 + Synpcc7942_0700 0.66 +3.3 692,434 + Synpcc7942_0700 0.66 -0.2 692,434 + Synpcc7942_0700 0.66 +0.5 692,434 + Synpcc7942_0700 0.66 -0.2 692,437 - Synpcc7942_0700 0.67 +2.1 692,486 - Synpcc7942_0700 0.72 -1.2
Or see this region's nucleotide sequence