Experiment: nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rps1 and Synpcc7942_0695 are separated by 277 nucleotides Synpcc7942_0695 and psbT are separated by 209 nucleotides psbT and psbB are separated by 76 nucleotides
Synpcc7942_0694: rps1 - 30S ribosomal protein S1, at 687,133 to 688,056
rps1
Synpcc7942_0695: Synpcc7942_0695 - hypothetical protein, at 688,334 to 688,840
_0695
Synpcc7942_0696: psbT - photosystem II reaction center protein T, at 689,050 to 689,145
psbT
Synpcc7942_0697: psbB - photosystem II core light harvesting protein, at 689,222 to 690,748
psbB
Position (kb) 689
690 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 688.236 kb on + strand at 688.365 kb on + strand at 688.386 kb on + strand, within Synpcc7942_0695 at 688.434 kb on + strand, within Synpcc7942_0695 at 688.442 kb on - strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand, within Synpcc7942_0695 at 688.552 kb on + strand at 688.552 kb on + strand, within Synpcc7942_0695 at 688.558 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.560 kb on - strand, within Synpcc7942_0695 at 688.571 kb on - strand, within Synpcc7942_0695 at 688.622 kb on + strand, within Synpcc7942_0695 at 688.627 kb on + strand, within Synpcc7942_0695 at 688.692 kb on - strand, within Synpcc7942_0695 at 688.722 kb on + strand, within Synpcc7942_0695 at 688.759 kb on - strand, within Synpcc7942_0695 at 688.760 kb on + strand, within Synpcc7942_0695 at 688.787 kb on - strand, within Synpcc7942_0695 at 688.788 kb on - strand, within Synpcc7942_0695 at 688.825 kb on + strand at 688.871 kb on + strand at 689.018 kb on - strand at 689.021 kb on + strand at 689.021 kb on + strand at 689.028 kb on + strand at 689.029 kb on - strand at 689.095 kb on + strand, within psbT
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 50 mM remove 688,236 + -1.2 688,365 + +2.6 688,386 + Synpcc7942_0695 0.10 -2.5 688,434 + Synpcc7942_0695 0.20 +0.2 688,442 - Synpcc7942_0695 0.21 -1.2 688,552 + Synpcc7942_0695 0.43 -3.0 688,552 + Synpcc7942_0695 0.43 -1.2 688,552 + Synpcc7942_0695 0.43 +0.8 688,552 + Synpcc7942_0695 0.43 -2.5 688,552 + Synpcc7942_0695 0.43 -1.2 688,552 + Synpcc7942_0695 0.43 -1.0 688,552 + Synpcc7942_0695 0.43 -2.2 688,552 + Synpcc7942_0695 0.43 -3.4 688,552 + Synpcc7942_0695 0.43 -1.2 688,552 + Synpcc7942_0695 0.43 -0.3 688,552 + -0.2 688,552 + Synpcc7942_0695 0.43 +0.3 688,558 - Synpcc7942_0695 0.44 -1.8 688,560 - Synpcc7942_0695 0.45 -1.8 688,560 - Synpcc7942_0695 0.45 -0.2 688,560 - Synpcc7942_0695 0.45 -4.1 688,560 - Synpcc7942_0695 0.45 +2.5 688,560 - Synpcc7942_0695 0.45 -3.9 688,560 - Synpcc7942_0695 0.45 -1.2 688,560 - Synpcc7942_0695 0.45 -2.5 688,560 - Synpcc7942_0695 0.45 -1.2 688,560 - Synpcc7942_0695 0.45 -0.6 688,571 - Synpcc7942_0695 0.47 -1.8 688,622 + Synpcc7942_0695 0.57 -0.2 688,627 + Synpcc7942_0695 0.58 +1.4 688,692 - Synpcc7942_0695 0.71 -0.2 688,722 + Synpcc7942_0695 0.77 -1.8 688,759 - Synpcc7942_0695 0.84 -1.5 688,760 + Synpcc7942_0695 0.84 -2.5 688,787 - Synpcc7942_0695 0.89 -1.2 688,788 - Synpcc7942_0695 0.90 -1.2 688,825 + -1.8 688,871 + -0.2 689,018 - +2.6 689,021 + -2.2 689,021 + +2.0 689,028 + -0.2 689,029 - -1.8 689,095 + psbT Synpcc7942_0696 0.47 +1.2
Or see this region's nucleotide sequence