Experiment: nitrate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ligA and hoxE are separated by 124 nucleotides hoxE and hoxF overlap by 1 nucleotides hoxF and cinA are separated by 9 nucleotides
Synpcc7942_0277: ligA - NAD-dependent DNA ligase LigA, at 271,493 to 273,532
ligA
Synpcc7942_0278: hoxE - bidirectional hydrogenase complex protein HoxE, at 273,657 to 274,154
hoxE
Synpcc7942_0279: hoxF - NADH dehydrogenase (quinone), at 274,154 to 275,758
hoxF
Synpcc7942_0280: cinA - competence damage-inducible protein A, at 275,768 to 277,033
cinA
Position (kb) 274
275
276 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 273.533 kb on + strand at 273.536 kb on - strand at 273.557 kb on - strand at 273.622 kb on + strand at 273.622 kb on + strand at 273.623 kb on - strand at 273.628 kb on - strand at 273.641 kb on - strand at 273.644 kb on - strand at 273.648 kb on + strand at 273.656 kb on - strand at 273.656 kb on - strand at 273.656 kb on - strand at 273.677 kb on + strand at 273.682 kb on + strand at 273.725 kb on - strand, within hoxE at 273.747 kb on - strand, within hoxE at 273.776 kb on + strand, within hoxE at 273.777 kb on + strand, within hoxE at 273.777 kb on + strand, within hoxE at 273.784 kb on - strand, within hoxE at 273.784 kb on - strand, within hoxE at 273.790 kb on - strand, within hoxE at 273.811 kb on + strand, within hoxE at 273.828 kb on + strand, within hoxE at 273.853 kb on - strand, within hoxE at 273.853 kb on - strand, within hoxE at 273.862 kb on + strand, within hoxE at 273.865 kb on + strand, within hoxE at 273.873 kb on - strand, within hoxE at 273.875 kb on + strand, within hoxE at 273.883 kb on - strand, within hoxE at 273.964 kb on + strand, within hoxE at 273.972 kb on - strand, within hoxE at 273.975 kb on + strand, within hoxE at 273.993 kb on + strand, within hoxE at 274.001 kb on - strand, within hoxE at 274.002 kb on + strand, within hoxE at 274.010 kb on - strand, within hoxE at 274.022 kb on + strand, within hoxE at 274.022 kb on + strand, within hoxE at 274.029 kb on + strand, within hoxE at 274.035 kb on - strand, within hoxE at 274.037 kb on + strand, within hoxE at 274.037 kb on - strand, within hoxE at 274.039 kb on + strand at 274.039 kb on + strand, within hoxE at 274.039 kb on + strand, within hoxE at 274.039 kb on + strand, within hoxE at 274.039 kb on + strand, within hoxE at 274.039 kb on + strand, within hoxE at 274.039 kb on + strand, within hoxE at 274.041 kb on + strand, within hoxE at 274.045 kb on - strand, within hoxE at 274.047 kb on - strand, within hoxE at 274.047 kb on - strand, within hoxE at 274.047 kb on - strand, within hoxE at 274.081 kb on - strand, within hoxE at 274.083 kb on - strand, within hoxE at 274.086 kb on + strand, within hoxE at 274.094 kb on - strand, within hoxE at 274.125 kb on - strand at 274.133 kb on - strand at 274.139 kb on + strand at 274.147 kb on - strand at 274.151 kb on + strand at 274.156 kb on + strand at 274.166 kb on + strand at 274.174 kb on - strand at 274.175 kb on + strand at 274.208 kb on - strand at 274.231 kb on + strand at 274.238 kb on + strand at 274.239 kb on - strand at 274.285 kb on - strand at 274.285 kb on - strand at 274.285 kb on - strand at 274.315 kb on + strand, within hoxF at 274.338 kb on + strand, within hoxF at 274.343 kb on + strand at 274.353 kb on - strand, within hoxF at 274.353 kb on - strand, within hoxF at 274.356 kb on - strand, within hoxF at 274.362 kb on + strand, within hoxF at 274.364 kb on + strand, within hoxF at 274.376 kb on + strand, within hoxF at 274.388 kb on + strand, within hoxF at 274.388 kb on + strand, within hoxF at 274.397 kb on + strand, within hoxF at 274.398 kb on - strand, within hoxF at 274.398 kb on - strand, within hoxF at 274.402 kb on + strand, within hoxF at 274.402 kb on + strand, within hoxF at 274.410 kb on - strand, within hoxF at 274.415 kb on - strand, within hoxF at 274.446 kb on - strand, within hoxF at 274.447 kb on - strand, within hoxF at 274.459 kb on - strand, within hoxF at 274.485 kb on - strand, within hoxF at 274.488 kb on + strand, within hoxF at 274.509 kb on - strand, within hoxF at 274.534 kb on - strand, within hoxF at 274.544 kb on - strand, within hoxF at 274.554 kb on - strand, within hoxF at 274.595 kb on + strand, within hoxF at 274.603 kb on - strand, within hoxF at 274.646 kb on - strand, within hoxF at 274.689 kb on - strand, within hoxF at 274.761 kb on + strand, within hoxF at 274.769 kb on - strand, within hoxF at 274.769 kb on - strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.786 kb on - strand, within hoxF at 274.786 kb on - strand, within hoxF at 274.786 kb on - strand, within hoxF at 274.786 kb on - strand, within hoxF at 274.791 kb on + strand, within hoxF at 274.794 kb on + strand, within hoxF at 274.799 kb on - strand, within hoxF at 274.802 kb on + strand, within hoxF at 274.839 kb on + strand, within hoxF at 274.898 kb on + strand, within hoxF at 274.946 kb on + strand, within hoxF at 274.946 kb on + strand, within hoxF at 274.946 kb on + strand, within hoxF at 274.946 kb on + strand, within hoxF at 274.954 kb on - strand, within hoxF at 274.987 kb on - strand, within hoxF at 275.065 kb on - strand, within hoxF at 275.065 kb on - strand, within hoxF at 275.078 kb on - strand, within hoxF at 275.103 kb on + strand, within hoxF at 275.103 kb on + strand, within hoxF at 275.103 kb on + strand, within hoxF at 275.111 kb on - strand, within hoxF at 275.111 kb on - strand, within hoxF at 275.111 kb on - strand, within hoxF at 275.113 kb on + strand, within hoxF at 275.139 kb on + strand, within hoxF at 275.150 kb on + strand, within hoxF at 275.226 kb on + strand, within hoxF at 275.314 kb on - strand, within hoxF at 275.350 kb on - strand, within hoxF at 275.356 kb on + strand, within hoxF at 275.381 kb on - strand, within hoxF at 275.382 kb on - strand, within hoxF at 275.405 kb on - strand, within hoxF at 275.407 kb on + strand, within hoxF at 275.441 kb on - strand, within hoxF at 275.455 kb on - strand, within hoxF at 275.457 kb on + strand, within hoxF at 275.457 kb on + strand, within hoxF at 275.501 kb on + strand, within hoxF at 275.543 kb on + strand, within hoxF at 275.550 kb on + strand, within hoxF at 275.551 kb on - strand, within hoxF at 275.569 kb on + strand, within hoxF at 275.569 kb on - strand, within hoxF at 275.579 kb on + strand, within hoxF at 275.579 kb on + strand, within hoxF at 275.587 kb on - strand, within hoxF at 275.598 kb on + strand at 275.598 kb on + strand at 275.606 kb on - strand at 275.606 kb on - strand at 275.609 kb on + strand at 275.616 kb on - strand at 275.660 kb on - strand at 275.661 kb on + strand at 275.680 kb on + strand at 275.682 kb on + strand at 275.692 kb on + strand at 275.710 kb on - strand at 275.715 kb on + strand at 275.735 kb on - strand at 275.751 kb on + strand at 275.759 kb on - strand at 275.789 kb on + strand at 275.856 kb on + strand at 275.864 kb on - strand at 275.864 kb on - strand at 275.864 kb on - strand at 275.866 kb on + strand at 275.871 kb on + strand at 275.893 kb on - strand at 275.912 kb on - strand, within cinA at 275.912 kb on - strand, within cinA at 275.973 kb on + strand, within cinA at 275.993 kb on + strand, within cinA at 276.003 kb on - strand, within cinA at 276.016 kb on + strand, within cinA at 276.016 kb on + strand, within cinA at 276.020 kb on + strand, within cinA at 276.024 kb on - strand, within cinA at 276.025 kb on + strand, within cinA at 276.069 kb on + strand, within cinA at 276.095 kb on + strand, within cinA at 276.103 kb on - strand, within cinA at 276.116 kb on + strand, within cinA at 276.145 kb on - strand, within cinA at 276.182 kb on + strand, within cinA at 276.220 kb on + strand, within cinA at 276.228 kb on - strand, within cinA at 276.251 kb on + strand, within cinA at 276.271 kb on - strand, within cinA at 276.292 kb on + strand, within cinA at 276.292 kb on + strand, within cinA at 276.300 kb on - strand, within cinA at 276.300 kb on - strand, within cinA at 276.316 kb on + strand, within cinA at 276.319 kb on - strand, within cinA at 276.338 kb on - strand, within cinA at 276.348 kb on + strand, within cinA at 276.376 kb on + strand, within cinA at 276.386 kb on + strand, within cinA at 276.409 kb on + strand, within cinA at 276.417 kb on - strand, within cinA at 276.514 kb on + strand, within cinA at 276.521 kb on - strand, within cinA at 276.521 kb on - strand, within cinA at 276.531 kb on - strand, within cinA at 276.572 kb on + strand, within cinA at 276.589 kb on - strand, within cinA at 276.638 kb on - strand, within cinA at 276.695 kb on - strand, within cinA at 276.695 kb on - strand, within cinA at 276.750 kb on + strand, within cinA at 276.751 kb on - strand, within cinA
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate 50 mM remove 273,533 + -2.9 273,536 - -0.1 273,557 - +2.3 273,622 + +2.0 273,622 + -1.1 273,623 - +1.6 273,628 - +0.5 273,641 - -1.1 273,644 - -1.7 273,648 + +1.2 273,656 - -1.7 273,656 - +1.7 273,656 - +5.0 273,677 + +0.9 273,682 + +2.8 273,725 - hoxE Synpcc7942_0278 0.14 +1.9 273,747 - hoxE Synpcc7942_0278 0.18 +0.9 273,776 + hoxE Synpcc7942_0278 0.24 -1.1 273,777 + hoxE Synpcc7942_0278 0.24 -0.7 273,777 + hoxE Synpcc7942_0278 0.24 +3.5 273,784 - hoxE Synpcc7942_0278 0.26 +2.2 273,784 - hoxE Synpcc7942_0278 0.26 -1.1 273,790 - hoxE Synpcc7942_0278 0.27 -1.1 273,811 + hoxE Synpcc7942_0278 0.31 -2.1 273,828 + hoxE Synpcc7942_0278 0.34 +2.1 273,853 - hoxE Synpcc7942_0278 0.39 +4.1 273,853 - hoxE Synpcc7942_0278 0.39 +3.7 273,862 + hoxE Synpcc7942_0278 0.41 +2.2 273,865 + hoxE Synpcc7942_0278 0.42 -1.1 273,873 - hoxE Synpcc7942_0278 0.43 +1.0 273,875 + hoxE Synpcc7942_0278 0.44 +3.1 273,883 - hoxE Synpcc7942_0278 0.45 +0.9 273,964 + hoxE Synpcc7942_0278 0.62 +3.0 273,972 - hoxE Synpcc7942_0278 0.63 -0.3 273,975 + hoxE Synpcc7942_0278 0.64 -1.7 273,993 + hoxE Synpcc7942_0278 0.67 +1.9 274,001 - hoxE Synpcc7942_0278 0.69 +3.2 274,002 + hoxE Synpcc7942_0278 0.69 +3.4 274,010 - hoxE Synpcc7942_0278 0.71 +2.0 274,022 + hoxE Synpcc7942_0278 0.73 +1.2 274,022 + hoxE Synpcc7942_0278 0.73 -1.9 274,029 + hoxE Synpcc7942_0278 0.75 +0.9 274,035 - hoxE Synpcc7942_0278 0.76 -0.4 274,037 + hoxE Synpcc7942_0278 0.76 +3.4 274,037 - hoxE Synpcc7942_0278 0.76 +0.9 274,039 + -1.7 274,039 + hoxE Synpcc7942_0278 0.77 +3.7 274,039 + hoxE Synpcc7942_0278 0.77 -1.7 274,039 + hoxE Synpcc7942_0278 0.77 -1.1 274,039 + hoxE Synpcc7942_0278 0.77 -0.1 274,039 + hoxE Synpcc7942_0278 0.77 +4.4 274,039 + hoxE Synpcc7942_0278 0.77 +0.9 274,041 + hoxE Synpcc7942_0278 0.77 +2.5 274,045 - hoxE Synpcc7942_0278 0.78 +0.3 274,047 - hoxE Synpcc7942_0278 0.78 -0.1 274,047 - hoxE Synpcc7942_0278 0.78 +3.9 274,047 - hoxE Synpcc7942_0278 0.78 +1.6 274,081 - hoxE Synpcc7942_0278 0.85 +0.3 274,083 - hoxE Synpcc7942_0278 0.86 +1.5 274,086 + hoxE Synpcc7942_0278 0.86 +1.5 274,094 - hoxE Synpcc7942_0278 0.88 -0.1 274,125 - -1.1 274,133 - +1.9 274,139 + -1.1 274,147 - -2.4 274,151 + -1.1 274,156 + +0.9 274,166 + -1.7 274,174 - +1.6 274,175 + -1.1 274,208 - +2.2 274,231 + +2.5 274,238 + +4.5 274,239 - +3.7 274,285 - +0.3 274,285 - -1.7 274,285 - -1.7 274,315 + hoxF Synpcc7942_0279 0.10 +2.9 274,338 + hoxF Synpcc7942_0279 0.11 +4.5 274,343 + -0.1 274,353 - hoxF Synpcc7942_0279 0.12 +1.7 274,353 - hoxF Synpcc7942_0279 0.12 -3.6 274,356 - hoxF Synpcc7942_0279 0.13 +3.8 274,362 + hoxF Synpcc7942_0279 0.13 -0.5 274,364 + hoxF Synpcc7942_0279 0.13 +0.3 274,376 + hoxF Synpcc7942_0279 0.14 +2.9 274,388 + hoxF Synpcc7942_0279 0.15 -1.7 274,388 + hoxF Synpcc7942_0279 0.15 +1.9 274,397 + hoxF Synpcc7942_0279 0.15 +2.5 274,398 - hoxF Synpcc7942_0279 0.15 +3.2 274,398 - hoxF Synpcc7942_0279 0.15 +3.0 274,402 + hoxF Synpcc7942_0279 0.15 +1.9 274,402 + hoxF Synpcc7942_0279 0.15 +2.9 274,410 - hoxF Synpcc7942_0279 0.16 +0.9 274,415 - hoxF Synpcc7942_0279 0.16 +0.9 274,446 - hoxF Synpcc7942_0279 0.18 -2.4 274,447 - hoxF Synpcc7942_0279 0.18 +2.3 274,459 - hoxF Synpcc7942_0279 0.19 +3.5 274,485 - hoxF Synpcc7942_0279 0.21 +2.1 274,488 + hoxF Synpcc7942_0279 0.21 +0.9 274,509 - hoxF Synpcc7942_0279 0.22 -1.4 274,534 - hoxF Synpcc7942_0279 0.24 +3.6 274,544 - hoxF Synpcc7942_0279 0.24 -1.4 274,554 - hoxF Synpcc7942_0279 0.25 +2.2 274,595 + hoxF Synpcc7942_0279 0.27 -0.1 274,603 - hoxF Synpcc7942_0279 0.28 -0.1 274,646 - hoxF Synpcc7942_0279 0.31 -0.1 274,689 - hoxF Synpcc7942_0279 0.33 -1.9 274,761 + hoxF Synpcc7942_0279 0.38 -1.1 274,769 - hoxF Synpcc7942_0279 0.38 +2.3 274,769 - hoxF Synpcc7942_0279 0.38 +4.5 274,778 + hoxF Synpcc7942_0279 0.39 +2.8 274,778 + hoxF Synpcc7942_0279 0.39 +5.2 274,778 + hoxF Synpcc7942_0279 0.39 +1.9 274,778 + hoxF Synpcc7942_0279 0.39 -0.1 274,778 + hoxF Synpcc7942_0279 0.39 +1.3 274,786 - hoxF Synpcc7942_0279 0.39 -0.3 274,786 - hoxF Synpcc7942_0279 0.39 +2.7 274,786 - hoxF Synpcc7942_0279 0.39 +3.0 274,786 - hoxF Synpcc7942_0279 0.39 -0.1 274,791 + hoxF Synpcc7942_0279 0.40 -0.4 274,794 + hoxF Synpcc7942_0279 0.40 +2.0 274,799 - hoxF Synpcc7942_0279 0.40 -1.1 274,802 + hoxF Synpcc7942_0279 0.40 -0.1 274,839 + hoxF Synpcc7942_0279 0.43 +2.9 274,898 + hoxF Synpcc7942_0279 0.46 +2.6 274,946 + hoxF Synpcc7942_0279 0.49 +1.4 274,946 + hoxF Synpcc7942_0279 0.49 -1.1 274,946 + hoxF Synpcc7942_0279 0.49 -0.1 274,946 + hoxF Synpcc7942_0279 0.49 -0.1 274,954 - hoxF Synpcc7942_0279 0.50 -1.1 274,987 - hoxF Synpcc7942_0279 0.52 +1.6 275,065 - hoxF Synpcc7942_0279 0.57 +3.3 275,065 - hoxF Synpcc7942_0279 0.57 +3.9 275,078 - hoxF Synpcc7942_0279 0.58 +2.2 275,103 + hoxF Synpcc7942_0279 0.59 +2.9 275,103 + hoxF Synpcc7942_0279 0.59 +0.5 275,103 + hoxF Synpcc7942_0279 0.59 +4.0 275,111 - hoxF Synpcc7942_0279 0.60 +0.7 275,111 - hoxF Synpcc7942_0279 0.60 +1.3 275,111 - hoxF Synpcc7942_0279 0.60 +1.2 275,113 + hoxF Synpcc7942_0279 0.60 +2.9 275,139 + hoxF Synpcc7942_0279 0.61 +3.7 275,150 + hoxF Synpcc7942_0279 0.62 -1.7 275,226 + hoxF Synpcc7942_0279 0.67 +2.4 275,314 - hoxF Synpcc7942_0279 0.72 -1.7 275,350 - hoxF Synpcc7942_0279 0.75 -0.4 275,356 + hoxF Synpcc7942_0279 0.75 +1.7 275,381 - hoxF Synpcc7942_0279 0.76 -1.7 275,382 - hoxF Synpcc7942_0279 0.77 +1.2 275,405 - hoxF Synpcc7942_0279 0.78 -1.7 275,407 + hoxF Synpcc7942_0279 0.78 -0.3 275,441 - hoxF Synpcc7942_0279 0.80 +3.0 275,455 - hoxF Synpcc7942_0279 0.81 +2.5 275,457 + hoxF Synpcc7942_0279 0.81 -0.1 275,457 + hoxF Synpcc7942_0279 0.81 +0.9 275,501 + hoxF Synpcc7942_0279 0.84 +1.0 275,543 + hoxF Synpcc7942_0279 0.87 +0.8 275,550 + hoxF Synpcc7942_0279 0.87 -2.1 275,551 - hoxF Synpcc7942_0279 0.87 +2.8 275,569 + hoxF Synpcc7942_0279 0.88 -1.1 275,569 - hoxF Synpcc7942_0279 0.88 +2.7 275,579 + hoxF Synpcc7942_0279 0.89 +2.6 275,579 + hoxF Synpcc7942_0279 0.89 +4.8 275,587 - hoxF Synpcc7942_0279 0.89 -0.1 275,598 + +3.4 275,598 + -1.7 275,606 - -0.1 275,606 - -0.1 275,609 + -0.1 275,616 - +3.3 275,660 - -1.7 275,661 + +1.1 275,680 + -0.1 275,682 + +2.6 275,692 + +1.4 275,710 - -0.7 275,715 + -3.1 275,735 - -1.1 275,751 + +0.3 275,759 - -0.1 275,789 + -2.1 275,856 + +3.6 275,864 - +2.5 275,864 - +3.0 275,864 - +2.2 275,866 + +3.0 275,871 + +2.5 275,893 - +3.0 275,912 - cinA Synpcc7942_0280 0.11 +2.5 275,912 - cinA Synpcc7942_0280 0.11 +0.8 275,973 + cinA Synpcc7942_0280 0.16 +1.6 275,993 + cinA Synpcc7942_0280 0.18 +2.5 276,003 - cinA Synpcc7942_0280 0.19 -1.7 276,016 + cinA Synpcc7942_0280 0.20 +1.2 276,016 + cinA Synpcc7942_0280 0.20 +0.5 276,020 + cinA Synpcc7942_0280 0.20 +2.5 276,024 - cinA Synpcc7942_0280 0.20 -1.1 276,025 + cinA Synpcc7942_0280 0.20 -1.1 276,069 + cinA Synpcc7942_0280 0.24 -0.1 276,095 + cinA Synpcc7942_0280 0.26 +2.7 276,103 - cinA Synpcc7942_0280 0.26 +3.9 276,116 + cinA Synpcc7942_0280 0.27 -1.1 276,145 - cinA Synpcc7942_0280 0.30 +2.4 276,182 + cinA Synpcc7942_0280 0.33 +2.6 276,220 + cinA Synpcc7942_0280 0.36 +3.7 276,228 - cinA Synpcc7942_0280 0.36 +3.8 276,251 + cinA Synpcc7942_0280 0.38 +4.0 276,271 - cinA Synpcc7942_0280 0.40 -0.1 276,292 + cinA Synpcc7942_0280 0.41 +3.9 276,292 + cinA Synpcc7942_0280 0.41 +1.7 276,300 - cinA Synpcc7942_0280 0.42 +1.6 276,300 - cinA Synpcc7942_0280 0.42 -1.1 276,316 + cinA Synpcc7942_0280 0.43 -1.1 276,319 - cinA Synpcc7942_0280 0.44 +2.9 276,338 - cinA Synpcc7942_0280 0.45 +2.0 276,348 + cinA Synpcc7942_0280 0.46 +0.9 276,376 + cinA Synpcc7942_0280 0.48 +3.5 276,386 + cinA Synpcc7942_0280 0.49 +2.8 276,409 + cinA Synpcc7942_0280 0.51 +2.3 276,417 - cinA Synpcc7942_0280 0.51 +2.0 276,514 + cinA Synpcc7942_0280 0.59 +3.3 276,521 - cinA Synpcc7942_0280 0.59 +2.2 276,521 - cinA Synpcc7942_0280 0.59 +2.6 276,531 - cinA Synpcc7942_0280 0.60 +3.7 276,572 + cinA Synpcc7942_0280 0.64 +2.1 276,589 - cinA Synpcc7942_0280 0.65 +2.1 276,638 - cinA Synpcc7942_0280 0.69 +1.0 276,695 - cinA Synpcc7942_0280 0.73 -1.7 276,695 - cinA Synpcc7942_0280 0.73 +3.6 276,750 + cinA Synpcc7942_0280 0.78 -0.1 276,751 - cinA Synpcc7942_0280 0.78 +1.5
Or see this region's nucleotide sequence